RNA–Protein interactions for RNA: ENST00000591315.5

VMP1-211, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 800 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-211ENST00000591315 ZFYVE9O95405 1425 aa17.15■□□□□ 0.34
VMP1-211ENST00000591315 RIMS2Q9UQ26 1411 aa17.15■□□□□ 0.34
VMP1-211ENST00000591315 ILDR1Q86SU0 546 aaPredicted RBP17.12■□□□□ 0.33
VMP1-211ENST00000591315 SLC26A8Q96RN1 970 aa17.12■□□□□ 0.33
VMP1-211ENST00000591315 STRCP1A6NGW2 1772 aa17.1■□□□□ 0.33
VMP1-211ENST00000591315 ZNF326Q5BKZ1 582 aaKnown RBP17.09■□□□□ 0.33
VMP1-211ENST00000591315 KIF1BO60333 1816 aa17.08■□□□□ 0.33
VMP1-211ENST00000591315 PPP1R15AO75807 674 aaPredicted RBP17.08■□□□□ 0.32
VMP1-211ENST00000591315 BCANQ96GW7 911 aa17.08■□□□□ 0.32
VMP1-211ENST00000591315 PLEKHG1Q9ULL1 1385 aa17.05■□□□□ 0.32
VMP1-211ENST00000591315 HRCP23327 699 aa17.05■□□□□ 0.32
VMP1-211ENST00000591315 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.04■□□□□ 0.32
VMP1-211ENST00000591315 NEXMIFQ5QGS0 1516 aa17.03■□□□□ 0.32
VMP1-211ENST00000591315 HDGFP51858 240 aaKnown RBP17.03■□□□□ 0.32
VMP1-211ENST00000591315 RGL3Q3MIN7 710 aa17.03■□□□□ 0.32
VMP1-211ENST00000591315 FBXO41Q8TF61 875 aa17.03■□□□□ 0.32
VMP1-211ENST00000591315 CCDC144AA2RUR9 1427 aa17.03■□□□□ 0.32
VMP1-211ENST00000591315 ADAMTS13Q76LX8 1427 aa17.03■□□□□ 0.32
VMP1-211ENST00000591315 ACIN1Q9UKV3 1341 aaKnown RBP17.01■□□□□ 0.31
VMP1-211ENST00000591315 TRIM26Q12899 539 aaPredicted RBP17.01■□□□□ 0.31
VMP1-211ENST00000591315 RBM33Q96EV2 1170 aaKnown RBP17.01■□□□□ 0.31
VMP1-211ENST00000591315 SPATA31E1Q6ZUB1 1445 aa17.01■□□□□ 0.31
VMP1-211ENST00000591315 ANKRD30BQ9BXX2 1392 aa17.01■□□□□ 0.31
VMP1-211ENST00000591315 CPS1P31327 1500 aa17■□□□□ 0.31
VMP1-211ENST00000591315 NRXN3Q9Y4C0 1643 aa16.99■□□□□ 0.31
VMP1-211ENST00000591315 LRRC7Q96NW7 1537 aa16.99■□□□□ 0.31
VMP1-211ENST00000591315 KCNA6P17658 529 aa16.98■□□□□ 0.31
VMP1-211ENST00000591315 TBX22Q9Y458 520 aa16.98■□□□□ 0.31
VMP1-211ENST00000591315 PPLO60437 1756 aa16.97■□□□□ 0.31
VMP1-211ENST00000591315 XIRP1Q702N8 1843 aaKnown RBP16.96■□□□□ 0.3
VMP1-211ENST00000591315 PTPRUQ92729 1446 aa16.96■□□□□ 0.3
VMP1-211ENST00000591315 ADGRF5Q8IZF2 1346 aa16.96■□□□□ 0.3
VMP1-211ENST00000591315 CHD2O14647 1828 aaKnown RBP16.95■□□□□ 0.3
VMP1-211ENST00000591315 RPGRIP1LQ68CZ1 1315 aa16.95■□□□□ 0.3
VMP1-211ENST00000591315 SETBP1Q9Y6X0 1596 aa16.94■□□□□ 0.3
VMP1-211ENST00000591315 IQSEC2Q5JU85 1478 aa16.94■□□□□ 0.3
VMP1-211ENST00000591315 METP08581 1390 aa16.94■□□□□ 0.3
VMP1-211ENST00000591315 UBAP1LF5GYI3 381 aa16.94■□□□□ 0.3
VMP1-211ENST00000591315 PROSER2Q86WR7 435 aaPredicted RBP16.93■□□□□ 0.3
VMP1-211ENST00000591315 NWD1Q149M9 1564 aa16.93■□□□□ 0.3
VMP1-211ENST00000591315 TMEM94Q12767 1356 aa16.92■□□□□ 0.3
VMP1-211ENST00000591315 VGFO15240 615 aaPredicted RBP16.92■□□□□ 0.3
VMP1-211ENST00000591315 IFT172Q9UG01 1749 aa16.92■□□□□ 0.3
VMP1-211ENST00000591315 DIP2AQ14689 1571 aa16.91■□□□□ 0.3
VMP1-211ENST00000591315 ALKQ9UM73 1620 aa16.91■□□□□ 0.3
VMP1-211ENST00000591315 AMOTL2Q9Y2J4 779 aa16.9■□□□□ 0.3
VMP1-211ENST00000591315 SETD1AO15047 1707 aaKnown RBP16.89■□□□□ 0.29
VMP1-211ENST00000591315 NKTRP30414 1462 aaKnown RBP16.87■□□□□ 0.29
VMP1-211ENST00000591315 PIP4K2BP78356 416 aa16.87■□□□□ 0.29
VMP1-211ENST00000591315 PIK3R4Q99570 1358 aa16.87■□□□□ 0.29
VMP1-211ENST00000591315 SIN3AQ96ST3 1273 aa16.86■□□□□ 0.29
VMP1-211ENST00000591315 KDM2AQ9Y2K7 1162 aa16.86■□□□□ 0.29
VMP1-211ENST00000591315 DHX57Q6P158 1386 aaKnown RBP16.86■□□□□ 0.29
VMP1-211ENST00000591315 XRN1Q8IZH2 1706 aaKnown RBP16.85■□□□□ 0.29
VMP1-211ENST00000591315 SCAF1Q9H7N4 1312 aaKnown RBP16.85■□□□□ 0.29
VMP1-211ENST00000591315 TMEM132EQ6IEE7 984 aa16.84■□□□□ 0.29
VMP1-211ENST00000591315 TOM1O60784 492 aa16.83■□□□□ 0.28
VMP1-211ENST00000591315 PIK3C2GO75747 1445 aa16.83■□□□□ 0.28
VMP1-211ENST00000591315 DCAF11Q8TEB1 546 aa16.83■□□□□ 0.28
VMP1-211ENST00000591315 ASXL1Q8IXJ9 1541 aa16.82■□□□□ 0.28
VMP1-211ENST00000591315 CFAP70Q5T0N1 1121 aa16.82■□□□□ 0.28
VMP1-211ENST00000591315 PCGF6Q9BYE7 350 aa16.82■□□□□ 0.28
VMP1-211ENST00000591315 NRXN1Q9ULB1 1477 aa16.81■□□□□ 0.28
VMP1-211ENST00000591315 STK26Q9P289 416 aa16.81■□□□□ 0.28
VMP1-211ENST00000591315 MYOM2P54296 1465 aa16.8■□□□□ 0.28
VMP1-211ENST00000591315 ROBO2Q9HCK4 1378 aa16.8■□□□□ 0.28
VMP1-211ENST00000591315 C14orf37Q86TY3 774 aa16.8■□□□□ 0.28
VMP1-211ENST00000591315 NEUROD1Q13562 356 aa16.79■□□□□ 0.28
VMP1-211ENST00000591315 C14orf93Q9H972 538 aaKnown RBP16.79■□□□□ 0.28
VMP1-211ENST00000591315 MSH6P52701 1360 aa16.77■□□□□ 0.28
VMP1-211ENST00000591315 HSPA1LP34931 641 aa16.77■□□□□ 0.28
VMP1-211ENST00000591315 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.76■□□□□ 0.27
VMP1-211ENST00000591315 WAPLQ7Z5K2 1190 aa16.75■□□□□ 0.27
VMP1-211ENST00000591315 LRPPRCP42704 1394 aaKnown RBP16.75■□□□□ 0.27
VMP1-211ENST00000591315 L3MBTL2Q969R5 705 aa16.74■□□□□ 0.27
VMP1-211ENST00000591315 C19orf44Q9H6X5 657 aa16.74■□□□□ 0.27
VMP1-211ENST00000591315 PLEKHH1Q9ULM0 1364 aa16.74■□□□□ 0.27
VMP1-211ENST00000591315 YTHDC2Q9H6S0 1430 aaKnown RBP16.73■□□□□ 0.27
VMP1-211ENST00000591315 NCOA3Q9Y6Q9 1424 aa16.73■□□□□ 0.27
VMP1-211ENST00000591315 SLAIN2Q9P270 581 aa16.73■□□□□ 0.27
VMP1-211ENST00000591315 NALCNQ8IZF0 1738 aa16.73■□□□□ 0.27
VMP1-211ENST00000591315 PTCH1Q13635 1447 aa16.72■□□□□ 0.27
VMP1-211ENST00000591315 ATF3P18847 181 aa16.71■□□□□ 0.27
VMP1-211ENST00000591315 ABCC11Q96J66 1382 aa16.71■□□□□ 0.27
VMP1-211ENST00000591315 PRAG1Q86YV5 1406 aa16.7■□□□□ 0.26
VMP1-211ENST00000591315 ADGRL3Q9HAR2 1447 aa16.7■□□□□ 0.26
VMP1-211ENST00000591315 ADGRB1O14514 1584 aa16.7■□□□□ 0.26
VMP1-211ENST00000591315 TECPR2O15040 1411 aa16.7■□□□□ 0.26
VMP1-211ENST00000591315 ROBO1Q9Y6N7 1651 aa16.69■□□□□ 0.26
VMP1-211ENST00000591315 LAMC1P11047 1609 aa16.69■□□□□ 0.26
VMP1-211ENST00000591315 FAM135BQ49AJ0 1406 aa16.69■□□□□ 0.26
VMP1-211ENST00000591315 NBPF1Q3BBV0 1214 aa16.68■□□□□ 0.26
VMP1-211ENST00000591315 CADPS2Q86UW7 1296 aa16.68■□□□□ 0.26
VMP1-211ENST00000591315 KNDC1Q76NI1 1749 aa16.67■□□□□ 0.26
VMP1-211ENST00000591315 SAFB2Q14151 953 aaKnown RBP eCLIP16.67■□□□□ 0.26
VMP1-211ENST00000591315 TRAK1Q9UPV9 953 aa16.67■□□□□ 0.26
VMP1-211ENST00000591315 MST1RQ04912 1400 aa16.66■□□□□ 0.26
VMP1-211ENST00000591315 STAC3Q96MF2 364 aa16.66■□□□□ 0.26
VMP1-211ENST00000591315 PRAM1Q96QH2 718 aa16.65■□□□□ 0.26
VMP1-211ENST00000591315 DCCP43146 1447 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 231.8 ms