RNA–Protein interactions for RNA: ENST00000586477.1

ATG4D-205, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 5

Gene ATG4D, Length 628 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-205ENST00000586477 RIMS2Q9UQ26 1411 aa23.96■■□□□ 1.43
ATG4D-205ENST00000586477 SETD5Q9C0A6 1442 aa23.95■■□□□ 1.42
ATG4D-205ENST00000586477 DISP3Q9P2K9 1392 aa23.94■■□□□ 1.42
ATG4D-205ENST00000586477 PCGF6Q9BYE7 350 aa23.93■■□□□ 1.42
ATG4D-205ENST00000586477 SLC26A8Q96RN1 970 aa23.92■■□□□ 1.42
ATG4D-205ENST00000586477 CLTCL1P53675 1640 aa23.91■■□□□ 1.42
ATG4D-205ENST00000586477 PLEKHG1Q9ULL1 1385 aa23.91■■□□□ 1.42
ATG4D-205ENST00000586477 TRPM2O94759 1503 aa23.89■■□□□ 1.42
ATG4D-205ENST00000586477 CHGAP10645 457 aaKnown RBP23.89■■□□□ 1.41
ATG4D-205ENST00000586477 HRCP23327 699 aa23.89■■□□□ 1.41
ATG4D-205ENST00000586477 SCAF1Q9H7N4 1312 aaKnown RBP23.88■■□□□ 1.41
ATG4D-205ENST00000586477 TOM1O60784 492 aa23.88■■□□□ 1.41
ATG4D-205ENST00000586477 NWD1Q149M9 1564 aa23.87■■□□□ 1.41
ATG4D-205ENST00000586477 SENP3Q9H4L4 574 aaPredicted RBP23.87■■□□□ 1.41
ATG4D-205ENST00000586477 NUTM2DQ5VT03 806 aaPredicted RBP23.86■■□□□ 1.41
ATG4D-205ENST00000586477 CHD2O14647 1828 aaKnown RBP23.85■■□□□ 1.41
ATG4D-205ENST00000586477 PIP4K2BP78356 416 aa23.85■■□□□ 1.41
ATG4D-205ENST00000586477 TRIM52Q96A61 297 aa23.85■■□□□ 1.41
ATG4D-205ENST00000586477 ADAMTS13Q76LX8 1427 aa23.84■■□□□ 1.41
ATG4D-205ENST00000586477 RAB3GAP2Q9H2M9 1393 aa23.84■■□□□ 1.41
ATG4D-205ENST00000586477 KCNA6P17658 529 aa23.84■■□□□ 1.41
ATG4D-205ENST00000586477 NRXN3Q9Y4C0 1643 aa23.81■■□□□ 1.4
ATG4D-205ENST00000586477 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.81■■□□□ 1.4
ATG4D-205ENST00000586477 PPP1R15AO75807 674 aaPredicted RBP23.8■■□□□ 1.4
ATG4D-205ENST00000586477 KIF1BO60333 1816 aa23.8■■□□□ 1.4
ATG4D-205ENST00000586477 HDGFP51858 240 aaKnown RBP23.79■■□□□ 1.4
ATG4D-205ENST00000586477 NEXMIFQ5QGS0 1516 aa23.79■■□□□ 1.4
ATG4D-205ENST00000586477 TMEM94Q12767 1356 aa23.78■■□□□ 1.4
ATG4D-205ENST00000586477 BCANQ96GW7 911 aa23.78■■□□□ 1.4
ATG4D-205ENST00000586477 SLC4A1APQ9BWU0 796 aaKnown RBP23.78■■□□□ 1.4
ATG4D-205ENST00000586477 TBX22Q9Y458 520 aa23.78■■□□□ 1.4
ATG4D-205ENST00000586477 NKTRP30414 1462 aaKnown RBP23.78■■□□□ 1.4
ATG4D-205ENST00000586477 DIP2AQ14689 1571 aa23.78■■□□□ 1.4
ATG4D-205ENST00000586477 RBM33Q96EV2 1170 aaKnown RBP23.76■■□□□ 1.39
ATG4D-205ENST00000586477 HSPA1LP34931 641 aa23.75■■□□□ 1.39
ATG4D-205ENST00000586477 FOXD1Q16676 465 aa23.75■■□□□ 1.39
ATG4D-205ENST00000586477 ILDR2Q71H61 639 aa23.75■■□□□ 1.39
ATG4D-205ENST00000586477 SETBP1Q9Y6X0 1596 aa23.74■■□□□ 1.39
ATG4D-205ENST00000586477 PROSER2Q86WR7 435 aaPredicted RBP23.72■■□□□ 1.39
ATG4D-205ENST00000586477 PTPRUQ92729 1446 aa23.72■■□□□ 1.39
ATG4D-205ENST00000586477 ZNF326Q5BKZ1 582 aaKnown RBP23.7■■□□□ 1.38
ATG4D-205ENST00000586477 MPHOSPH9Q99550 1183 aa23.7■■□□□ 1.38
ATG4D-205ENST00000586477 PIK3R4Q99570 1358 aa23.68■■□□□ 1.38
ATG4D-205ENST00000586477 PPLO60437 1756 aa23.67■■□□□ 1.38
ATG4D-205ENST00000586477 XRN1Q8IZH2 1706 aaKnown RBP23.67■■□□□ 1.38
ATG4D-205ENST00000586477 SETD1AO15047 1707 aaKnown RBP23.65■■□□□ 1.38
ATG4D-205ENST00000586477 METP08581 1390 aa23.64■■□□□ 1.37
ATG4D-205ENST00000586477 MED1Q15648 1581 aaPredicted RBP23.62■■□□□ 1.37
ATG4D-205ENST00000586477 SPATA31E1Q6ZUB1 1445 aa23.62■■□□□ 1.37
ATG4D-205ENST00000586477 SOCS7O14512 581 aa23.62■■□□□ 1.37
ATG4D-205ENST00000586477 AMOTL2Q9Y2J4 779 aa23.61■■□□□ 1.37
ATG4D-205ENST00000586477 FAM135BQ49AJ0 1406 aa23.6■■□□□ 1.37
ATG4D-205ENST00000586477 ROBO1Q9Y6N7 1651 aa23.6■■□□□ 1.37
ATG4D-205ENST00000586477 NCOA3Q9Y6Q9 1424 aa23.59■■□□□ 1.37
ATG4D-205ENST00000586477 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.59■■□□□ 1.37
ATG4D-205ENST00000586477 IFT172Q9UG01 1749 aa23.59■■□□□ 1.37
ATG4D-205ENST00000586477 CCDC144AA2RUR9 1427 aa23.59■■□□□ 1.37
ATG4D-205ENST00000586477 MSH6P52701 1360 aa23.58■■□□□ 1.37
ATG4D-205ENST00000586477 RPGRIP1LQ68CZ1 1315 aa23.58■■□□□ 1.36
ATG4D-205ENST00000586477 VGFO15240 615 aaPredicted RBP23.54■■□□□ 1.36
ATG4D-205ENST00000586477 SLAIN2Q9P270 581 aa23.51■■□□□ 1.35
ATG4D-205ENST00000586477 ADGRF5Q8IZF2 1346 aa23.51■■□□□ 1.35
ATG4D-205ENST00000586477 DHX57Q6P158 1386 aaKnown RBP23.51■■□□□ 1.35
ATG4D-205ENST00000586477 RGL3Q3MIN7 710 aa23.49■■□□□ 1.35
ATG4D-205ENST00000586477 C19orf44Q9H6X5 657 aa23.49■■□□□ 1.35
ATG4D-205ENST00000586477 NALCNQ8IZF0 1738 aa23.48■■□□□ 1.35
ATG4D-205ENST00000586477 PHF23Q9BUL5 403 aaPredicted RBP23.48■■□□□ 1.35
ATG4D-205ENST00000586477 PRAG1Q86YV5 1406 aa23.48■■□□□ 1.35
ATG4D-205ENST00000586477 C14orf37Q86TY3 774 aa23.46■■□□□ 1.35
ATG4D-205ENST00000586477 ANKRD30BQ9BXX2 1392 aa23.46■■□□□ 1.35
ATG4D-205ENST00000586477 CLSPNQ9HAW4 1339 aa23.46■■□□□ 1.35
ATG4D-205ENST00000586477 ASXL1Q8IXJ9 1541 aa23.45■■□□□ 1.34
ATG4D-205ENST00000586477 ROBO2Q9HCK4 1378 aa23.45■■□□□ 1.34
ATG4D-205ENST00000586477 DCCP43146 1447 aa23.44■■□□□ 1.34
ATG4D-205ENST00000586477 PTCH1Q13635 1447 aa23.44■■□□□ 1.34
ATG4D-205ENST00000586477 PHLPP1O60346 1717 aa23.44■■□□□ 1.34
ATG4D-205ENST00000586477 ADGRL3Q9HAR2 1447 aa23.43■■□□□ 1.34
ATG4D-205ENST00000586477 CADPS2Q86UW7 1296 aa23.43■■□□□ 1.34
ATG4D-205ENST00000586477 PIK3C2GO75747 1445 aa23.42■■□□□ 1.34
ATG4D-205ENST00000586477 COL16A1Q07092 1604 aaPredicted RBP23.41■■□□□ 1.34
ATG4D-205ENST00000586477 ATF3P18847 181 aa23.41■■□□□ 1.34
ATG4D-205ENST00000586477 CCER1Q8TC90 406 aaPredicted RBP23.41■■□□□ 1.34
ATG4D-205ENST00000586477 NRXN1Q9ULB1 1477 aa23.41■■□□□ 1.34
ATG4D-205ENST00000586477 MST1RQ04912 1400 aa23.41■■□□□ 1.34
ATG4D-205ENST00000586477 AHDC1Q5TGY3 1603 aaPredicted RBP23.38■■□□□ 1.33
ATG4D-205ENST00000586477 MYOM2P54296 1465 aa23.37■■□□□ 1.33
ATG4D-205ENST00000586477 BRINP3Q76B58 766 aa23.36■■□□□ 1.33
ATG4D-205ENST00000586477 KNDC1Q76NI1 1749 aa23.35■■□□□ 1.33
ATG4D-205ENST00000586477 TECPR2O15040 1411 aa23.34■■□□□ 1.33
ATG4D-205ENST00000586477 LRPPRCP42704 1394 aaKnown RBP23.33■■□□□ 1.33
ATG4D-205ENST00000586477 TMEM132EQ6IEE7 984 aa23.33■■□□□ 1.33
ATG4D-205ENST00000586477 NHSL1Q5SYE7 1610 aa23.32■■□□□ 1.32
ATG4D-205ENST00000586477 C14orf93Q9H972 538 aaKnown RBP23.3■■□□□ 1.32
ATG4D-205ENST00000586477 C1orf167Q5SNV9 1468 aa23.3■■□□□ 1.32
ATG4D-205ENST00000586477 LAMC1P11047 1609 aa23.3■■□□□ 1.32
ATG4D-205ENST00000586477 ABCC11Q96J66 1382 aa23.29■■□□□ 1.32
ATG4D-205ENST00000586477 STK26Q9P289 416 aa23.29■■□□□ 1.32
ATG4D-205ENST00000586477 PLEKHH1Q9ULM0 1364 aa23.28■■□□□ 1.32
ATG4D-205ENST00000586477 YTHDC2Q9H6S0 1430 aaKnown RBP23.28■■□□□ 1.32
ATG4D-205ENST00000586477 CFAP70Q5T0N1 1121 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms