RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.11■■□□□ 1.13
SMARCE1-216ENST00000580419 SENP3Q9H4L4 574 aaPredicted RBP22.1■■□□□ 1.13
SMARCE1-216ENST00000580419 RIMS2Q9UQ26 1411 aa22.07■■□□□ 1.12
SMARCE1-216ENST00000580419 CHD2O14647 1828 aaKnown RBP22.06■■□□□ 1.12
SMARCE1-216ENST00000580419 HSPA1LP34931 641 aa22.06■■□□□ 1.12
SMARCE1-216ENST00000580419 DIP2AQ14689 1571 aa22.05■■□□□ 1.12
SMARCE1-216ENST00000580419 PIK3R4Q99570 1358 aa22.05■■□□□ 1.12
SMARCE1-216ENST00000580419 PIP4K2BP78356 416 aa22.05■■□□□ 1.12
SMARCE1-216ENST00000580419 TBX22Q9Y458 520 aa22.05■■□□□ 1.12
SMARCE1-216ENST00000580419 NCOA3Q9Y6Q9 1424 aa22.05■■□□□ 1.12
SMARCE1-216ENST00000580419 NAIPQ13075 1403 aa22.03■■□□□ 1.12
SMARCE1-216ENST00000580419 FAM135BQ49AJ0 1406 aa22.03■■□□□ 1.12
SMARCE1-216ENST00000580419 SPHKAPQ2M3C7 1700 aa22.03■■□□□ 1.12
SMARCE1-216ENST00000580419 SLC26A8Q96RN1 970 aa22.02■■□□□ 1.12
SMARCE1-216ENST00000580419 TMEM94Q12767 1356 aa22.01■■□□□ 1.11
SMARCE1-216ENST00000580419 SCAF1Q9H7N4 1312 aaKnown RBP22.01■■□□□ 1.11
SMARCE1-216ENST00000580419 HFM1A2PYH4 1435 aa22■■□□□ 1.11
SMARCE1-216ENST00000580419 ITGAEP38570 1179 aa21.99■■□□□ 1.11
SMARCE1-216ENST00000580419 PPP1R15AO75807 674 aaPredicted RBP21.98■■□□□ 1.11
SMARCE1-216ENST00000580419 ADAMTS13Q76LX8 1427 aa21.97■■□□□ 1.11
SMARCE1-216ENST00000580419 PROSER2Q86WR7 435 aaPredicted RBP21.96■■□□□ 1.11
SMARCE1-216ENST00000580419 PPARGC1BQ86YN6 1023 aaKnown RBP21.96■■□□□ 1.11
SMARCE1-216ENST00000580419 ILDR2Q71H61 639 aa21.95■■□□□ 1.1
SMARCE1-216ENST00000580419 TRPM2O94759 1503 aa21.95■■□□□ 1.1
SMARCE1-216ENST00000580419 MED1Q15648 1581 aaPredicted RBP21.95■■□□□ 1.1
SMARCE1-216ENST00000580419 SOCS7O14512 581 aa21.94■■□□□ 1.1
SMARCE1-216ENST00000580419 SETBP1Q9Y6X0 1596 aa21.93■■□□□ 1.1
SMARCE1-216ENST00000580419 MSH6P52701 1360 aa21.92■■□□□ 1.1
SMARCE1-216ENST00000580419 ACIN1Q9UKV3 1341 aaKnown RBP21.92■■□□□ 1.1
SMARCE1-216ENST00000580419 BCANQ96GW7 911 aa21.92■■□□□ 1.1
SMARCE1-216ENST00000580419 CHGAP10645 457 aaKnown RBP21.9■■□□□ 1.1
SMARCE1-216ENST00000580419 KIF1BO60333 1816 aa21.89■■□□□ 1.09
SMARCE1-216ENST00000580419 CLTCL1P53675 1640 aa21.87■■□□□ 1.09
SMARCE1-216ENST00000580419 ROBO1Q9Y6N7 1651 aa21.86■■□□□ 1.09
SMARCE1-216ENST00000580419 NRXN3Q9Y4C0 1643 aa21.86■■□□□ 1.09
SMARCE1-216ENST00000580419 SLAIN2Q9P270 581 aa21.84■■□□□ 1.09
SMARCE1-216ENST00000580419 NEXMIFQ5QGS0 1516 aa21.84■■□□□ 1.09
SMARCE1-216ENST00000580419 DCCP43146 1447 aa21.83■■□□□ 1.09
SMARCE1-216ENST00000580419 C19orf44Q9H6X5 657 aa21.83■■□□□ 1.09
SMARCE1-216ENST00000580419 XRN1Q8IZH2 1706 aaKnown RBP21.83■■□□□ 1.08
SMARCE1-216ENST00000580419 RPGRIP1LQ68CZ1 1315 aa21.81■■□□□ 1.08
SMARCE1-216ENST00000580419 CADPS2Q86UW7 1296 aa21.81■■□□□ 1.08
SMARCE1-216ENST00000580419 AMOTL2Q9Y2J4 779 aa21.79■■□□□ 1.08
SMARCE1-216ENST00000580419 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.79■■□□□ 1.08
SMARCE1-216ENST00000580419 PRAG1Q86YV5 1406 aa21.79■■□□□ 1.08
SMARCE1-216ENST00000580419 PTPRUQ92729 1446 aa21.79■■□□□ 1.08
SMARCE1-216ENST00000580419 ZNF326Q5BKZ1 582 aaKnown RBP21.78■■□□□ 1.08
SMARCE1-216ENST00000580419 SLC4A1APQ9BWU0 796 aaKnown RBP21.78■■□□□ 1.08
SMARCE1-216ENST00000580419 VGFO15240 615 aaPredicted RBP21.77■■□□□ 1.08
SMARCE1-216ENST00000580419 NUTM2DQ5VT03 806 aaPredicted RBP21.77■■□□□ 1.08
SMARCE1-216ENST00000580419 TRIM52Q96A61 297 aa21.76■■□□□ 1.07
SMARCE1-216ENST00000580419 RBM33Q96EV2 1170 aaKnown RBP21.75■■□□□ 1.07
SMARCE1-216ENST00000580419 ATF3P18847 181 aa21.73■■□□□ 1.07
SMARCE1-216ENST00000580419 PHF23Q9BUL5 403 aaPredicted RBP21.73■■□□□ 1.07
SMARCE1-216ENST00000580419 METP08581 1390 aa21.73■■□□□ 1.07
SMARCE1-216ENST00000580419 AHDC1Q5TGY3 1603 aaPredicted RBP21.73■■□□□ 1.07
SMARCE1-216ENST00000580419 PHLPP1O60346 1717 aa21.72■■□□□ 1.07
SMARCE1-216ENST00000580419 SETD1AO15047 1707 aaKnown RBP21.72■■□□□ 1.07
SMARCE1-216ENST00000580419 PPLO60437 1756 aa21.71■■□□□ 1.07
SMARCE1-216ENST00000580419 JCADQ9P266 1359 aa21.71■■□□□ 1.07
SMARCE1-216ENST00000580419 COL16A1Q07092 1604 aaPredicted RBP21.7■■□□□ 1.06
SMARCE1-216ENST00000580419 C14orf37Q86TY3 774 aa21.7■■□□□ 1.06
SMARCE1-216ENST00000580419 PTCH1Q13635 1447 aa21.7■■□□□ 1.06
SMARCE1-216ENST00000580419 ADGRL3Q9HAR2 1447 aa21.67■■□□□ 1.06
SMARCE1-216ENST00000580419 CCDC144AA2RUR9 1427 aa21.66■■□□□ 1.06
SMARCE1-216ENST00000580419 SPATA31E1Q6ZUB1 1445 aa21.65■■□□□ 1.06
SMARCE1-216ENST00000580419 MPHOSPH9Q99550 1183 aa21.65■■□□□ 1.06
SMARCE1-216ENST00000580419 ANKRD30BQ9BXX2 1392 aa21.64■■□□□ 1.06
SMARCE1-216ENST00000580419 SPATA31A6Q5VVP1 1343 aa21.64■■□□□ 1.05
SMARCE1-216ENST00000580419 MST1RQ04912 1400 aa21.63■■□□□ 1.05
SMARCE1-216ENST00000580419 SHPRHQ149N8 1683 aa21.63■■□□□ 1.05
SMARCE1-216ENST00000580419 RGS17Q9UGC6 210 aaPredicted RBP21.63■■□□□ 1.05
SMARCE1-216ENST00000580419 BRINP3Q76B58 766 aa21.62■■□□□ 1.05
SMARCE1-216ENST00000580419 SETD5Q9C0A6 1442 aa21.62■■□□□ 1.05
SMARCE1-216ENST00000580419 IFT172Q9UG01 1749 aa21.61■■□□□ 1.05
SMARCE1-216ENST00000580419 NALCNQ8IZF0 1738 aa21.6■■□□□ 1.05
SMARCE1-216ENST00000580419 LAMC1P11047 1609 aa21.6■■□□□ 1.05
SMARCE1-216ENST00000580419 NHSL1Q5SYE7 1610 aa21.6■■□□□ 1.05
SMARCE1-216ENST00000580419 ASXL1Q8IXJ9 1541 aa21.6■■□□□ 1.05
SMARCE1-216ENST00000580419 TECPR2O15040 1411 aa21.57■■□□□ 1.04
SMARCE1-216ENST00000580419 HRCP23327 699 aa21.57■■□□□ 1.04
SMARCE1-216ENST00000580419 ROBO2Q9HCK4 1378 aa21.55■■□□□ 1.04
SMARCE1-216ENST00000580419 FOXD1Q16676 465 aa21.53■■□□□ 1.04
SMARCE1-216ENST00000580419 PIK3C2GO75747 1445 aa21.53■■□□□ 1.04
SMARCE1-216ENST00000580419 C1orf167Q5SNV9 1468 aa21.52■■□□□ 1.04
SMARCE1-216ENST00000580419 ABCC11Q96J66 1382 aa21.52■■□□□ 1.04
SMARCE1-216ENST00000580419 LRRC59Q96AG4 307 aaKnown RBP21.52■■□□□ 1.04
SMARCE1-216ENST00000580419 KNDC1Q76NI1 1749 aa21.52■■□□□ 1.03
SMARCE1-216ENST00000580419 ADGRF5Q8IZF2 1346 aa21.51■■□□□ 1.03
SMARCE1-216ENST00000580419 NRXN1Q9ULB1 1477 aa21.51■■□□□ 1.03
SMARCE1-216ENST00000580419 CDC42BPGQ6DT37 1551 aa21.5■■□□□ 1.03
SMARCE1-216ENST00000580419 SIRT1Q96EB6 747 aa21.5■■□□□ 1.03
SMARCE1-216ENST00000580419 LRPPRCP42704 1394 aaKnown RBP21.49■■□□□ 1.03
SMARCE1-216ENST00000580419 MYOM2P54296 1465 aa21.49■■□□□ 1.03
SMARCE1-216ENST00000580419 RAB3GAP2Q9H2M9 1393 aa21.48■■□□□ 1.03
SMARCE1-216ENST00000580419 POTEAQ6S8J7 498 aa21.48■■□□□ 1.03
SMARCE1-216ENST00000580419 LRP6O75581 1613 aa21.47■■□□□ 1.03
SMARCE1-216ENST00000580419 STAC3Q96MF2 364 aa21.47■■□□□ 1.03
SMARCE1-216ENST00000580419 ZNF772Q68DY9 489 aaPredicted RBP21.46■■□□□ 1.03
SMARCE1-216ENST00000580419 RGL3Q3MIN7 710 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms