RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 NWD1Q149M9 1564 aa28.26■■■□□ 2.11
SMPD3-209ENST00000567223 SPHKAPQ2M3C7 1700 aa28.25■■■□□ 2.11
SMPD3-209ENST00000567223 NKTRP30414 1462 aaKnown RBP28.23■■■□□ 2.11
SMPD3-209ENST00000567223 KCNA6P17658 529 aa28.23■■■□□ 2.11
SMPD3-209ENST00000567223 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.23■■■□□ 2.11
SMPD3-209ENST00000567223 XIRP1Q702N8 1843 aaKnown RBP28.2■■■□□ 2.11
SMPD3-209ENST00000567223 DIP2AQ14689 1571 aa28.19■■■□□ 2.1
SMPD3-209ENST00000567223 TRPM2O94759 1503 aa28.18■■■□□ 2.1
SMPD3-209ENST00000567223 SLC26A8Q96RN1 970 aa28.17■■■□□ 2.1
SMPD3-209ENST00000567223 TBX22Q9Y458 520 aa28.15■■■□□ 2.1
SMPD3-209ENST00000567223 CHD2O14647 1828 aaKnown RBP28.13■■■□□ 2.09
SMPD3-209ENST00000567223 PIK3R4Q99570 1358 aa28.13■■■□□ 2.09
SMPD3-209ENST00000567223 ADAMTS13Q76LX8 1427 aa28.13■■■□□ 2.09
SMPD3-209ENST00000567223 PPP1R15AO75807 674 aaPredicted RBP28.13■■■□□ 2.09
SMPD3-209ENST00000567223 PIP4K2BP78356 416 aa28.12■■■□□ 2.09
SMPD3-209ENST00000567223 TMEM94Q12767 1356 aa28.11■■■□□ 2.09
SMPD3-209ENST00000567223 CHGAP10645 457 aaKnown RBP28.1■■■□□ 2.09
SMPD3-209ENST00000567223 NCOA3Q9Y6Q9 1424 aa28.09■■■□□ 2.09
SMPD3-209ENST00000567223 HSPA1LP34931 641 aa28.09■■■□□ 2.09
SMPD3-209ENST00000567223 CLTCL1P53675 1640 aa28.09■■■□□ 2.09
SMPD3-209ENST00000567223 SCAF1Q9H7N4 1312 aaKnown RBP28.08■■■□□ 2.09
SMPD3-209ENST00000567223 SETBP1Q9Y6X0 1596 aa28.07■■■□□ 2.08
SMPD3-209ENST00000567223 DISP3Q9P2K9 1392 aa28.06■■■□□ 2.08
SMPD3-209ENST00000567223 BCANQ96GW7 911 aa28.05■■■□□ 2.08
SMPD3-209ENST00000567223 FAM135BQ49AJ0 1406 aa28.04■■■□□ 2.08
SMPD3-209ENST00000567223 ACIN1Q9UKV3 1341 aaKnown RBP28.04■■■□□ 2.08
SMPD3-209ENST00000567223 PROSER2Q86WR7 435 aaPredicted RBP28.04■■■□□ 2.08
SMPD3-209ENST00000567223 NRXN3Q9Y4C0 1643 aa28.02■■■□□ 2.08
SMPD3-209ENST00000567223 NEXMIFQ5QGS0 1516 aa28.02■■■□□ 2.08
SMPD3-209ENST00000567223 KIF1BO60333 1816 aa28.01■■■□□ 2.07
SMPD3-209ENST00000567223 TRIM52Q96A61 297 aa27.99■■■□□ 2.07
SMPD3-209ENST00000567223 SLC4A1APQ9BWU0 796 aaKnown RBP27.99■■■□□ 2.07
SMPD3-209ENST00000567223 MSH6P52701 1360 aa27.98■■■□□ 2.07
SMPD3-209ENST00000567223 NUTM2DQ5VT03 806 aaPredicted RBP27.96■■■□□ 2.07
SMPD3-209ENST00000567223 XRN1Q8IZH2 1706 aaKnown RBP27.93■■■□□ 2.06
SMPD3-209ENST00000567223 ZNF326Q5BKZ1 582 aaKnown RBP27.93■■■□□ 2.06
SMPD3-209ENST00000567223 MED1Q15648 1581 aaPredicted RBP27.92■■■□□ 2.06
SMPD3-209ENST00000567223 PTPRUQ92729 1446 aa27.92■■■□□ 2.06
SMPD3-209ENST00000567223 RPGRIP1LQ68CZ1 1315 aa27.92■■■□□ 2.06
SMPD3-209ENST00000567223 ROBO1Q9Y6N7 1651 aa27.9■■■□□ 2.06
SMPD3-209ENST00000567223 RBM33Q96EV2 1170 aaKnown RBP27.88■■■□□ 2.05
SMPD3-209ENST00000567223 AMOTL2Q9Y2J4 779 aa27.87■■■□□ 2.05
SMPD3-209ENST00000567223 DCCP43146 1447 aa27.86■■■□□ 2.05
SMPD3-209ENST00000567223 VGFO15240 615 aaPredicted RBP27.86■■■□□ 2.05
SMPD3-209ENST00000567223 SENP3Q9H4L4 574 aaPredicted RBP27.86■■■□□ 2.05
SMPD3-209ENST00000567223 PRAG1Q86YV5 1406 aa27.85■■■□□ 2.05
SMPD3-209ENST00000567223 SETD5Q9C0A6 1442 aa27.85■■■□□ 2.05
SMPD3-209ENST00000567223 C19orf44Q9H6X5 657 aa27.85■■■□□ 2.05
SMPD3-209ENST00000567223 SLAIN2Q9P270 581 aa27.85■■■□□ 2.05
SMPD3-209ENST00000567223 METP08581 1390 aa27.85■■■□□ 2.05
SMPD3-209ENST00000567223 ILDR2Q71H61 639 aa27.84■■■□□ 2.05
SMPD3-209ENST00000567223 MPHOSPH9Q99550 1183 aa27.84■■■□□ 2.05
SMPD3-209ENST00000567223 CCDC144AA2RUR9 1427 aa27.84■■■□□ 2.05
SMPD3-209ENST00000567223 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.83■■■□□ 2.05
SMPD3-209ENST00000567223 PPLO60437 1756 aa27.83■■■□□ 2.05
SMPD3-209ENST00000567223 SETD1AO15047 1707 aaKnown RBP27.82■■■□□ 2.04
SMPD3-209ENST00000567223 CADPS2Q86UW7 1296 aa27.82■■■□□ 2.04
SMPD3-209ENST00000567223 SPATA31E1Q6ZUB1 1445 aa27.8■■■□□ 2.04
SMPD3-209ENST00000567223 PTCH1Q13635 1447 aa27.77■■■□□ 2.04
SMPD3-209ENST00000567223 FOXD1Q16676 465 aa27.75■■■□□ 2.03
SMPD3-209ENST00000567223 ATF3P18847 181 aa27.74■■■□□ 2.03
SMPD3-209ENST00000567223 IFT172Q9UG01 1749 aa27.73■■■□□ 2.03
SMPD3-209ENST00000567223 C14orf37Q86TY3 774 aa27.73■■■□□ 2.03
SMPD3-209ENST00000567223 ANKRD30BQ9BXX2 1392 aa27.73■■■□□ 2.03
SMPD3-209ENST00000567223 RAB3GAP2Q9H2M9 1393 aa27.73■■■□□ 2.03
SMPD3-209ENST00000567223 AHDC1Q5TGY3 1603 aaPredicted RBP27.72■■■□□ 2.03
SMPD3-209ENST00000567223 ADGRL3Q9HAR2 1447 aa27.72■■■□□ 2.03
SMPD3-209ENST00000567223 SOCS7O14512 581 aa27.71■■■□□ 2.03
SMPD3-209ENST00000567223 PHLPP1O60346 1717 aa27.7■■■□□ 2.03
SMPD3-209ENST00000567223 HRCP23327 699 aa27.7■■■□□ 2.02
SMPD3-209ENST00000567223 COL16A1Q07092 1604 aaPredicted RBP27.7■■■□□ 2.02
SMPD3-209ENST00000567223 MST1RQ04912 1400 aa27.67■■■□□ 2.02
SMPD3-209ENST00000567223 NALCNQ8IZF0 1738 aa27.66■■■□□ 2.02
SMPD3-209ENST00000567223 JCADQ9P266 1359 aa27.65■■■□□ 2.02
SMPD3-209ENST00000567223 PIK3C2GO75747 1445 aa27.64■■■□□ 2.02
SMPD3-209ENST00000567223 ROBO2Q9HCK4 1378 aa27.62■■■□□ 2.01
SMPD3-209ENST00000567223 PHF23Q9BUL5 403 aaPredicted RBP27.62■■■□□ 2.01
SMPD3-209ENST00000567223 ADGRF5Q8IZF2 1346 aa27.62■■■□□ 2.01
SMPD3-209ENST00000567223 TECPR2O15040 1411 aa27.61■■■□□ 2.01
SMPD3-209ENST00000567223 BRINP3Q76B58 766 aa27.61■■■□□ 2.01
SMPD3-209ENST00000567223 ASXL1Q8IXJ9 1541 aa27.61■■■□□ 2.01
SMPD3-209ENST00000567223 NRXN1Q9ULB1 1477 aa27.6■■■□□ 2.01
SMPD3-209ENST00000567223 MYOM2P54296 1465 aa27.59■■■□□ 2.01
SMPD3-209ENST00000567223 NHSL1Q5SYE7 1610 aa27.58■■■□□ 2.01
SMPD3-209ENST00000567223 RGL3Q3MIN7 710 aa27.57■■■□□ 2
SMPD3-209ENST00000567223 SHPRHQ149N8 1683 aa27.56■■■□□ 2
SMPD3-209ENST00000567223 KNDC1Q76NI1 1749 aa27.55■■■□□ 2
SMPD3-209ENST00000567223 SPATA31A6Q5VVP1 1343 aa27.55■■■□□ 2
SMPD3-209ENST00000567223 LAMC1P11047 1609 aa27.55■■■□□ 2
SMPD3-209ENST00000567223 LRPPRCP42704 1394 aaKnown RBP27.54■■■□□ 2
SMPD3-209ENST00000567223 ABCC11Q96J66 1382 aa27.54■■■□□ 2
SMPD3-209ENST00000567223 CDC42BPGQ6DT37 1551 aa27.52■■■□□ 2
SMPD3-209ENST00000567223 C1orf167Q5SNV9 1468 aa27.52■■■□□ 2
SMPD3-209ENST00000567223 RGS17Q9UGC6 210 aaPredicted RBP27.52■■■□□ 2
SMPD3-209ENST00000567223 C14orf93Q9H972 538 aaKnown RBP27.48■■□□□ 1.99
SMPD3-209ENST00000567223 SIRT1Q96EB6 747 aa27.47■■□□□ 1.99
SMPD3-209ENST00000567223 STAC3Q96MF2 364 aa27.46■■□□□ 1.99
SMPD3-209ENST00000567223 YTHDC2Q9H6S0 1430 aaKnown RBP27.46■■□□□ 1.99
SMPD3-209ENST00000567223 LRP6O75581 1613 aa27.43■■□□□ 1.98
SMPD3-209ENST00000567223 LRRC59Q96AG4 307 aaKnown RBP27.42■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms