RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 ZNF326Q5BKZ1 582 aaKnown RBP25■■□□□ 1.59
SNX1-208ENST00000559844 EIF4G2P78344 907 aaKnown RBP eCLIP24.99■■□□□ 1.59
SNX1-208ENST00000559844 LMTK3Q96Q04 1460 aa24.99■■□□□ 1.59
SNX1-208ENST00000559844 THEMISQ8N1K5 641 aaPredicted RBP24.96■■□□□ 1.59
SNX1-208ENST00000559844 PPLO60437 1756 aa24.95■■□□□ 1.59
SNX1-208ENST00000559844 HSPA5P11021 654 aaKnown RBP24.95■■□□□ 1.58
SNX1-208ENST00000559844 IFT172Q9UG01 1749 aa24.95■■□□□ 1.58
SNX1-208ENST00000559844 NBPF8Q3BBV2 869 aa24.94■■□□□ 1.58
SNX1-208ENST00000559844 YTHDC1Q96MU7 727 aaKnown RBP24.94■■□□□ 1.58
SNX1-208ENST00000559844 AEBP2Q6ZN18 517 aaPredicted RBP24.94■■□□□ 1.58
SNX1-208ENST00000559844 NEXMIFQ5QGS0 1516 aa24.93■■□□□ 1.58
SNX1-208ENST00000559844 TMEM2Q9UHN6 1383 aa24.93■■□□□ 1.58
SNX1-208ENST00000559844 SLIT1O75093 1534 aa24.91■■□□□ 1.58
SNX1-208ENST00000559844 RIMS2Q9UQ26 1411 aa24.91■■□□□ 1.58
SNX1-208ENST00000559844 HSPA2P54652 639 aa24.9■■□□□ 1.58
SNX1-208ENST00000559844 ARHGAP23Q9P227 1491 aa24.9■■□□□ 1.58
SNX1-208ENST00000559844 ZFYVE9O95405 1425 aa24.9■■□□□ 1.58
SNX1-208ENST00000559844 RPGRIP1LQ68CZ1 1315 aa24.89■■□□□ 1.58
SNX1-208ENST00000559844 NUTM2DQ5VT03 806 aaPredicted RBP24.89■■□□□ 1.57
SNX1-208ENST00000559844 DCAF11Q8TEB1 546 aa24.89■■□□□ 1.57
SNX1-208ENST00000559844 POLR1AO95602 1720 aaPredicted RBP24.86■■□□□ 1.57
SNX1-208ENST00000559844 KDM2AQ9Y2K7 1162 aa24.86■■□□□ 1.57
SNX1-208ENST00000559844 TXNDC2Q86VQ3 553 aa24.84■■□□□ 1.57
SNX1-208ENST00000559844 EID1Q9Y6B2 187 aa24.84■■□□□ 1.57
SNX1-208ENST00000559844 HDGFP51858 240 aaKnown RBP24.84■■□□□ 1.57
SNX1-208ENST00000559844 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.84■■□□□ 1.57
SNX1-208ENST00000559844 SCAF11Q99590 1463 aaKnown RBP24.83■■□□□ 1.57
SNX1-208ENST00000559844 LTKP29376 864 aa24.83■■□□□ 1.57
SNX1-208ENST00000559844 MYOM2P54296 1465 aa24.83■■□□□ 1.56
SNX1-208ENST00000559844 VGFO15240 615 aaPredicted RBP24.82■■□□□ 1.56
SNX1-208ENST00000559844 ANP32CO43423 234 aa24.82■■□□□ 1.56
SNX1-208ENST00000559844 ANKLE2Q86XL3 938 aa24.82■■□□□ 1.56
SNX1-208ENST00000559844 RALGAPBQ86X10 1494 aa24.8■■□□□ 1.56
SNX1-208ENST00000559844 SCAF1Q9H7N4 1312 aaKnown RBP24.8■■□□□ 1.56
SNX1-208ENST00000559844 SENP3Q9H4L4 574 aaPredicted RBP24.8■■□□□ 1.56
SNX1-208ENST00000559844 WASHC2AQ641Q2 1341 aa24.79■■□□□ 1.56
SNX1-208ENST00000559844 ADGRF5Q8IZF2 1346 aa24.79■■□□□ 1.56
SNX1-208ENST00000559844 STRCQ7RTU9 1775 aa24.79■■□□□ 1.56
SNX1-208ENST00000559844 STAC3Q96MF2 364 aa24.78■■□□□ 1.56
SNX1-208ENST00000559844 NCKAP5LQ9HCH0 1330 aa24.77■■□□□ 1.56
SNX1-208ENST00000559844 NRXN1Q9ULB1 1477 aa24.76■■□□□ 1.55
SNX1-208ENST00000559844 CCER2I3L3R5 266 aa24.76■■□□□ 1.55
SNX1-208ENST00000559844 IQGAP1P46940 1657 aa24.76■■□□□ 1.55
SNX1-208ENST00000559844 PLEKHG1Q9ULL1 1385 aa24.75■■□□□ 1.55
SNX1-208ENST00000559844 CCDC7Q96M83 1385 aa24.74■■□□□ 1.55
SNX1-208ENST00000559844 PIK3C2GO75747 1445 aa24.74■■□□□ 1.55
SNX1-208ENST00000559844 PRAG1Q86YV5 1406 aa24.74■■□□□ 1.55
SNX1-208ENST00000559844 BCANQ96GW7 911 aa24.74■■□□□ 1.55
SNX1-208ENST00000559844 NRXN3Q9Y4C0 1643 aa24.73■■□□□ 1.55
SNX1-208ENST00000559844 MED14O60244 1454 aa24.72■■□□□ 1.55
SNX1-208ENST00000559844 SETBP1Q9Y6X0 1596 aa24.72■■□□□ 1.55
SNX1-208ENST00000559844 NPHP4O75161 1426 aaPredicted RBP24.72■■□□□ 1.55
SNX1-208ENST00000559844 USP47Q96K76 1375 aa24.71■■□□□ 1.55
SNX1-208ENST00000559844 LAMC1P11047 1609 aa24.68■■□□□ 1.54
SNX1-208ENST00000559844 ALKQ9UM73 1620 aa24.67■■□□□ 1.54
SNX1-208ENST00000559844 SETD1AO15047 1707 aaKnown RBP24.67■■□□□ 1.54
SNX1-208ENST00000559844 TRPM1Q7Z4N2 1603 aa24.67■■□□□ 1.54
SNX1-208ENST00000559844 KIAA1210Q9ULL0 1709 aa24.66■■□□□ 1.54
SNX1-208ENST00000559844 ADAMTS13Q76LX8 1427 aa24.66■■□□□ 1.54
SNX1-208ENST00000559844 SLC26A8Q96RN1 970 aa24.65■■□□□ 1.54
SNX1-208ENST00000559844 C11orf95C9JLR9 678 aaPredicted RBP24.65■■□□□ 1.54
SNX1-208ENST00000559844 CFAP70Q5T0N1 1121 aa24.65■■□□□ 1.54
SNX1-208ENST00000559844 CARD11Q9BXL7 1154 aa24.64■■□□□ 1.54
SNX1-208ENST00000559844 DIP2AQ14689 1571 aa24.64■■□□□ 1.54
SNX1-208ENST00000559844 KIF7Q2M1P5 1343 aa24.63■■□□□ 1.53
SNX1-208ENST00000559844 C14orf93Q9H972 538 aaKnown RBP24.63■■□□□ 1.53
SNX1-208ENST00000559844 GTF3C3Q9Y5Q9 886 aa24.61■■□□□ 1.53
SNX1-208ENST00000559844 ROCK2O75116 1388 aaKnown RBP24.6■■□□□ 1.53
SNX1-208ENST00000559844 TBX22Q9Y458 520 aa24.58■■□□□ 1.53
SNX1-208ENST00000559844 ASXL1Q8IXJ9 1541 aa24.58■■□□□ 1.53
SNX1-208ENST00000559844 NBPF1Q3BBV0 1214 aa24.58■■□□□ 1.52
SNX1-208ENST00000559844 METP08581 1390 aa24.57■■□□□ 1.52
SNX1-208ENST00000559844 DMRT2Q9Y5R5 561 aa24.57■■□□□ 1.52
SNX1-208ENST00000559844 ADGRB1O14514 1584 aa24.57■■□□□ 1.52
SNX1-208ENST00000559844 TMEM132EQ6IEE7 984 aa24.56■■□□□ 1.52
SNX1-208ENST00000559844 GPRASP1Q5JY77 1395 aa24.56■■□□□ 1.52
SNX1-208ENST00000559844 CHD2O14647 1828 aaKnown RBP24.54■■□□□ 1.52
SNX1-208ENST00000559844 PIK3R4Q99570 1358 aa24.51■■□□□ 1.51
SNX1-208ENST00000559844 YTHDC2Q9H6S0 1430 aaKnown RBP24.5■■□□□ 1.51
SNX1-208ENST00000559844 PTPRUQ92729 1446 aa24.49■■□□□ 1.51
SNX1-208ENST00000559844 STK26Q9P289 416 aa24.48■■□□□ 1.51
SNX1-208ENST00000559844 XRN1Q8IZH2 1706 aaKnown RBP24.48■■□□□ 1.51
SNX1-208ENST00000559844 KNDC1Q76NI1 1749 aa24.47■■□□□ 1.51
SNX1-208ENST00000559844 ST20-MTHFSA0A0A6YYL1 179 aa24.47■■□□□ 1.51
SNX1-208ENST00000559844 STRCP1A6NGW2 1772 aa24.47■■□□□ 1.51
SNX1-208ENST00000559844 LRPPRCP42704 1394 aaKnown RBP24.47■■□□□ 1.51
SNX1-208ENST00000559844 AMOTL2Q9Y2J4 779 aa24.45■■□□□ 1.51
SNX1-208ENST00000559844 NWD1Q149M9 1564 aa24.45■■□□□ 1.51
SNX1-208ENST00000559844 ARHGEF28Q8N1W1 1705 aaKnown RBP24.44■■□□□ 1.5
SNX1-208ENST00000559844 PRKRIP1Q9H875 184 aaPredicted RBP24.44■■□□□ 1.5
SNX1-208ENST00000559844 TRAK1Q9UPV9 953 aa24.44■■□□□ 1.5
SNX1-208ENST00000559844 KCNA6P17658 529 aa24.43■■□□□ 1.5
SNX1-208ENST00000559844 ZNF335Q9H4Z2 1342 aaPredicted RBP24.43■■□□□ 1.5
SNX1-208ENST00000559844 ABCC11Q96J66 1382 aa24.42■■□□□ 1.5
SNX1-208ENST00000559844 CPS1P31327 1500 aa24.41■■□□□ 1.5
SNX1-208ENST00000559844 TECPR2O15040 1411 aa24.41■■□□□ 1.5
SNX1-208ENST00000559844 DLC1Q96QB1 1528 aa24.39■■□□□ 1.5
SNX1-208ENST00000559844 POLR3GLQ9BT43 218 aa24.39■■□□□ 1.49
SNX1-208ENST00000559844 ROBO2Q9HCK4 1378 aa24.38■■□□□ 1.49
SNX1-208ENST00000559844 PTCH1Q13635 1447 aa24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms