RNA–Protein interactions for RNA: ENST00000559433.5

LRRC28-214, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 1,045 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-214ENST00000559433 TRIM52Q96A61 297 aa18.92■□□□□ 0.62
LRRC28-214ENST00000559433 RIMS2Q9UQ26 1411 aa18.91■□□□□ 0.62
LRRC28-214ENST00000559433 TRPM2O94759 1503 aa18.9■□□□□ 0.62
LRRC28-214ENST00000559433 CLTCL1P53675 1640 aa18.89■□□□□ 0.62
LRRC28-214ENST00000559433 TOM1O60784 492 aa18.89■□□□□ 0.61
LRRC28-214ENST00000559433 PPP1R15AO75807 674 aaPredicted RBP18.89■□□□□ 0.61
LRRC28-214ENST00000559433 SCAF1Q9H7N4 1312 aaKnown RBP18.88■□□□□ 0.61
LRRC28-214ENST00000559433 LRRC7Q96NW7 1537 aa18.88■□□□□ 0.61
LRRC28-214ENST00000559433 KIF1BO60333 1816 aa18.88■□□□□ 0.61
LRRC28-214ENST00000559433 PLEKHG1Q9ULL1 1385 aa18.86■□□□□ 0.61
LRRC28-214ENST00000559433 SLC26A8Q96RN1 970 aa18.86■□□□□ 0.61
LRRC28-214ENST00000559433 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.85■□□□□ 0.61
LRRC28-214ENST00000559433 XIRP1Q702N8 1843 aaKnown RBP18.85■□□□□ 0.61
LRRC28-214ENST00000559433 PIP4K2BP78356 416 aa18.84■□□□□ 0.61
LRRC28-214ENST00000559433 SLC4A1APQ9BWU0 796 aaKnown RBP18.84■□□□□ 0.61
LRRC28-214ENST00000559433 NUTM2DQ5VT03 806 aaPredicted RBP18.83■□□□□ 0.6
LRRC28-214ENST00000559433 NWD1Q149M9 1564 aa18.83■□□□□ 0.6
LRRC28-214ENST00000559433 CHD2O14647 1828 aaKnown RBP18.81■□□□□ 0.6
LRRC28-214ENST00000559433 DIP2AQ14689 1571 aa18.81■□□□□ 0.6
LRRC28-214ENST00000559433 ALKQ9UM73 1620 aa18.79■□□□□ 0.6
LRRC28-214ENST00000559433 KCNA6P17658 529 aa18.79■□□□□ 0.6
LRRC28-214ENST00000559433 ZNF326Q5BKZ1 582 aaKnown RBP18.79■□□□□ 0.6
LRRC28-214ENST00000559433 SETD5Q9C0A6 1442 aa18.79■□□□□ 0.6
LRRC28-214ENST00000559433 NKTRP30414 1462 aaKnown RBP18.78■□□□□ 0.6
LRRC28-214ENST00000559433 NEXMIFQ5QGS0 1516 aa18.77■□□□□ 0.6
LRRC28-214ENST00000559433 ADAMTS13Q76LX8 1427 aa18.76■□□□□ 0.59
LRRC28-214ENST00000559433 NRXN3Q9Y4C0 1643 aa18.76■□□□□ 0.59
LRRC28-214ENST00000559433 FOXD1Q16676 465 aa18.75■□□□□ 0.59
LRRC28-214ENST00000559433 PROSER2Q86WR7 435 aaPredicted RBP18.75■□□□□ 0.59
LRRC28-214ENST00000559433 TBX22Q9Y458 520 aa18.75■□□□□ 0.59
LRRC28-214ENST00000559433 TMEM94Q12767 1356 aa18.75■□□□□ 0.59
LRRC28-214ENST00000559433 SETBP1Q9Y6X0 1596 aa18.75■□□□□ 0.59
LRRC28-214ENST00000559433 MPHOSPH9Q99550 1183 aa18.74■□□□□ 0.59
LRRC28-214ENST00000559433 ACIN1Q9UKV3 1341 aaKnown RBP18.74■□□□□ 0.59
LRRC28-214ENST00000559433 RAB3GAP2Q9H2M9 1393 aa18.72■□□□□ 0.59
LRRC28-214ENST00000559433 PPLO60437 1756 aa18.72■□□□□ 0.59
LRRC28-214ENST00000559433 CCDC144AA2RUR9 1427 aa18.71■□□□□ 0.59
LRRC28-214ENST00000559433 PIK3R4Q99570 1358 aa18.7■□□□□ 0.58
LRRC28-214ENST00000559433 RBM33Q96EV2 1170 aaKnown RBP18.7■□□□□ 0.58
LRRC28-214ENST00000559433 DISP3Q9P2K9 1392 aa18.68■□□□□ 0.58
LRRC28-214ENST00000559433 HSPA1LP34931 641 aa18.68■□□□□ 0.58
LRRC28-214ENST00000559433 XRN1Q8IZH2 1706 aaKnown RBP18.67■□□□□ 0.58
LRRC28-214ENST00000559433 C14orf37Q86TY3 774 aa18.66■□□□□ 0.58
LRRC28-214ENST00000559433 MSH6P52701 1360 aa18.66■□□□□ 0.58
LRRC28-214ENST00000559433 IFT172Q9UG01 1749 aa18.66■□□□□ 0.58
LRRC28-214ENST00000559433 PTPRUQ92729 1446 aa18.66■□□□□ 0.58
LRRC28-214ENST00000559433 RPGRIP1LQ68CZ1 1315 aa18.65■□□□□ 0.58
LRRC28-214ENST00000559433 SETD1AO15047 1707 aaKnown RBP18.65■□□□□ 0.58
LRRC28-214ENST00000559433 VGFO15240 615 aaPredicted RBP18.64■□□□□ 0.57
LRRC28-214ENST00000559433 AMOTL2Q9Y2J4 779 aa18.64■□□□□ 0.57
LRRC28-214ENST00000559433 METP08581 1390 aa18.63■□□□□ 0.57
LRRC28-214ENST00000559433 SPATA31E1Q6ZUB1 1445 aa18.62■□□□□ 0.57
LRRC28-214ENST00000559433 NCOA3Q9Y6Q9 1424 aa18.62■□□□□ 0.57
LRRC28-214ENST00000559433 ROBO1Q9Y6N7 1651 aa18.62■□□□□ 0.57
LRRC28-214ENST00000559433 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.61■□□□□ 0.57
LRRC28-214ENST00000559433 RGL3Q3MIN7 710 aa18.59■□□□□ 0.57
LRRC28-214ENST00000559433 FAM135BQ49AJ0 1406 aa18.58■□□□□ 0.57
LRRC28-214ENST00000559433 ANKRD30BQ9BXX2 1392 aa18.56■□□□□ 0.56
LRRC28-214ENST00000559433 HRCP23327 699 aa18.56■□□□□ 0.56
LRRC28-214ENST00000559433 ATF3P18847 181 aa18.55■□□□□ 0.56
LRRC28-214ENST00000559433 SLAIN2Q9P270 581 aa18.55■□□□□ 0.56
LRRC28-214ENST00000559433 NALCNQ8IZF0 1738 aa18.54■□□□□ 0.56
LRRC28-214ENST00000559433 ADGRF5Q8IZF2 1346 aa18.54■□□□□ 0.56
LRRC28-214ENST00000559433 C19orf44Q9H6X5 657 aa18.54■□□□□ 0.56
LRRC28-214ENST00000559433 MED1Q15648 1581 aaPredicted RBP18.54■□□□□ 0.56
LRRC28-214ENST00000559433 PHLPP1O60346 1717 aa18.52■□□□□ 0.56
LRRC28-214ENST00000559433 PTCH1Q13635 1447 aa18.52■□□□□ 0.56
LRRC28-214ENST00000559433 CADPS2Q86UW7 1296 aa18.52■□□□□ 0.56
LRRC28-214ENST00000559433 DCCP43146 1447 aa18.51■□□□□ 0.55
LRRC28-214ENST00000559433 PIK3C2GO75747 1445 aa18.5■□□□□ 0.55
LRRC28-214ENST00000559433 PRAG1Q86YV5 1406 aa18.49■□□□□ 0.55
LRRC28-214ENST00000559433 ADGRL3Q9HAR2 1447 aa18.49■□□□□ 0.55
LRRC28-214ENST00000559433 MYOM2P54296 1465 aa18.49■□□□□ 0.55
LRRC28-214ENST00000559433 LAMC1P11047 1609 aa18.49■□□□□ 0.55
LRRC28-214ENST00000559433 ROBO2Q9HCK4 1378 aa18.48■□□□□ 0.55
LRRC28-214ENST00000559433 KNDC1Q76NI1 1749 aa18.47■□□□□ 0.55
LRRC28-214ENST00000559433 ASXL1Q8IXJ9 1541 aa18.47■□□□□ 0.55
LRRC28-214ENST00000559433 NRXN1Q9ULB1 1477 aa18.46■□□□□ 0.55
LRRC28-214ENST00000559433 ADRA2BP18089 450 aa18.46■□□□□ 0.55
LRRC28-214ENST00000559433 ILDR2Q71H61 639 aa18.45■□□□□ 0.54
LRRC28-214ENST00000559433 MST1RQ04912 1400 aa18.45■□□□□ 0.54
LRRC28-214ENST00000559433 COL16A1Q07092 1604 aaPredicted RBP18.45■□□□□ 0.54
LRRC28-214ENST00000559433 AHDC1Q5TGY3 1603 aaPredicted RBP18.44■□□□□ 0.54
LRRC28-214ENST00000559433 LRPPRCP42704 1394 aaKnown RBP18.42■□□□□ 0.54
LRRC28-214ENST00000559433 STK26Q9P289 416 aa18.42■□□□□ 0.54
LRRC28-214ENST00000559433 TECPR2O15040 1411 aa18.41■□□□□ 0.54
LRRC28-214ENST00000559433 TMEM132EQ6IEE7 984 aa18.41■□□□□ 0.54
LRRC28-214ENST00000559433 YTHDC2Q9H6S0 1430 aaKnown RBP18.4■□□□□ 0.54
LRRC28-214ENST00000559433 BRINP3Q76B58 766 aa18.4■□□□□ 0.54
LRRC28-214ENST00000559433 NHSL1Q5SYE7 1610 aa18.4■□□□□ 0.54
LRRC28-214ENST00000559433 C14orf93Q9H972 538 aaKnown RBP18.39■□□□□ 0.53
LRRC28-214ENST00000559433 CDC42BPGQ6DT37 1551 aa18.38■□□□□ 0.53
LRRC28-214ENST00000559433 CFAP70Q5T0N1 1121 aa18.38■□□□□ 0.53
LRRC28-214ENST00000559433 ABCC11Q96J66 1382 aa18.38■□□□□ 0.53
LRRC28-214ENST00000559433 DCAF11Q8TEB1 546 aa18.37■□□□□ 0.53
LRRC28-214ENST00000559433 KDM2AQ9Y2K7 1162 aa18.37■□□□□ 0.53
LRRC28-214ENST00000559433 JCADQ9P266 1359 aa18.37■□□□□ 0.53
LRRC28-214ENST00000559433 SHPRHQ149N8 1683 aa18.36■□□□□ 0.53
LRRC28-214ENST00000559433 C1orf167Q5SNV9 1468 aa18.36■□□□□ 0.53
LRRC28-214ENST00000559433 DHX57Q6P158 1386 aaKnown RBP18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms