RNA–Protein interactions for RNA: ENST00000559347.1

SPG11-216, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 716 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-216ENST00000559347 TXNDC2Q86VQ3 553 aa16.54■□□□□ 0.24
SPG11-216ENST00000559347 EID1Q9Y6B2 187 aa16.54■□□□□ 0.24
SPG11-216ENST00000559347 NWD1Q149M9 1564 aa16.54■□□□□ 0.24
SPG11-216ENST00000559347 RIMS2Q9UQ26 1411 aa16.53■□□□□ 0.24
SPG11-216ENST00000559347 LRRC7Q96NW7 1537 aa16.52■□□□□ 0.24
SPG11-216ENST00000559347 DIP2AQ14689 1571 aa16.51■□□□□ 0.23
SPG11-216ENST00000559347 CHD2O14647 1828 aaKnown RBP16.5■□□□□ 0.23
SPG11-216ENST00000559347 ALKQ9UM73 1620 aa16.5■□□□□ 0.23
SPG11-216ENST00000559347 PLEKHG1Q9ULL1 1385 aa16.49■□□□□ 0.23
SPG11-216ENST00000559347 NRXN3Q9Y4C0 1643 aa16.48■□□□□ 0.23
SPG11-216ENST00000559347 NEXMIFQ5QGS0 1516 aa16.47■□□□□ 0.23
SPG11-216ENST00000559347 NKTRP30414 1462 aaKnown RBP16.47■□□□□ 0.23
SPG11-216ENST00000559347 PIAS4Q8N2W9 510 aaPredicted RBP16.46■□□□□ 0.23
SPG11-216ENST00000559347 CHGAP10645 457 aaKnown RBP16.45■□□□□ 0.22
SPG11-216ENST00000559347 TRIM52Q96A61 297 aa16.45■□□□□ 0.22
SPG11-216ENST00000559347 SETBP1Q9Y6X0 1596 aa16.45■□□□□ 0.22
SPG11-216ENST00000559347 PPLO60437 1756 aa16.45■□□□□ 0.22
SPG11-216ENST00000559347 ADAMTS13Q76LX8 1427 aa16.43■□□□□ 0.22
SPG11-216ENST00000559347 IFT172Q9UG01 1749 aa16.42■□□□□ 0.22
SPG11-216ENST00000559347 UBAP1LF5GYI3 381 aa16.42■□□□□ 0.22
SPG11-216ENST00000559347 PPP1R15AO75807 674 aaPredicted RBP16.42■□□□□ 0.22
SPG11-216ENST00000559347 SLC26A8Q96RN1 970 aa16.42■□□□□ 0.22
SPG11-216ENST00000559347 SLC4A1APQ9BWU0 796 aaKnown RBP16.42■□□□□ 0.22
SPG11-216ENST00000559347 SETD5Q9C0A6 1442 aa16.42■□□□□ 0.22
SPG11-216ENST00000559347 SETD1AO15047 1707 aaKnown RBP16.42■□□□□ 0.22
SPG11-216ENST00000559347 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.41■□□□□ 0.22
SPG11-216ENST00000559347 XRN1Q8IZH2 1706 aaKnown RBP16.41■□□□□ 0.22
SPG11-216ENST00000559347 HDGFP51858 240 aaKnown RBP16.39■□□□□ 0.21
SPG11-216ENST00000559347 RAB3GAP2Q9H2M9 1393 aa16.38■□□□□ 0.21
SPG11-216ENST00000559347 KCNA6P17658 529 aa16.37■□□□□ 0.21
SPG11-216ENST00000559347 NUTM2DQ5VT03 806 aaPredicted RBP16.37■□□□□ 0.21
SPG11-216ENST00000559347 BCANQ96GW7 911 aa16.36■□□□□ 0.21
SPG11-216ENST00000559347 TMEM94Q12767 1356 aa16.36■□□□□ 0.21
SPG11-216ENST00000559347 TOM1O60784 492 aa16.35■□□□□ 0.21
SPG11-216ENST00000559347 PIK3R4Q99570 1358 aa16.35■□□□□ 0.21
SPG11-216ENST00000559347 ZNF326Q5BKZ1 582 aaKnown RBP16.34■□□□□ 0.21
SPG11-216ENST00000559347 TBX22Q9Y458 520 aa16.34■□□□□ 0.21
SPG11-216ENST00000559347 ACIN1Q9UKV3 1341 aaKnown RBP16.34■□□□□ 0.21
SPG11-216ENST00000559347 CCDC144AA2RUR9 1427 aa16.34■□□□□ 0.21
SPG11-216ENST00000559347 MPHOSPH9Q99550 1183 aa16.33■□□□□ 0.2
SPG11-216ENST00000559347 PTPRUQ92729 1446 aa16.32■□□□□ 0.2
SPG11-216ENST00000559347 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.31■□□□□ 0.2
SPG11-216ENST00000559347 ROBO1Q9Y6N7 1651 aa16.31■□□□□ 0.2
SPG11-216ENST00000559347 SPATA31E1Q6ZUB1 1445 aa16.31■□□□□ 0.2
SPG11-216ENST00000559347 SCAF1Q9H7N4 1312 aaKnown RBP16.31■□□□□ 0.2
SPG11-216ENST00000559347 PIP4K2BP78356 416 aa16.31■□□□□ 0.2
SPG11-216ENST00000559347 NALCNQ8IZF0 1738 aa16.3■□□□□ 0.2
SPG11-216ENST00000559347 PROSER2Q86WR7 435 aaPredicted RBP16.28■□□□□ 0.2
SPG11-216ENST00000559347 NCOA3Q9Y6Q9 1424 aa16.28■□□□□ 0.2
SPG11-216ENST00000559347 RBM33Q96EV2 1170 aaKnown RBP16.27■□□□□ 0.2
SPG11-216ENST00000559347 METP08581 1390 aa16.26■□□□□ 0.19
SPG11-216ENST00000559347 MSH6P52701 1360 aa16.26■□□□□ 0.19
SPG11-216ENST00000559347 RPGRIP1LQ68CZ1 1315 aa16.26■□□□□ 0.19
SPG11-216ENST00000559347 MSH5O43196 834 aa16.26■□□□□ 0.19
SPG11-216ENST00000559347 HSPA1LP34931 641 aa16.25■□□□□ 0.19
SPG11-216ENST00000559347 KNDC1Q76NI1 1749 aa16.25■□□□□ 0.19
SPG11-216ENST00000559347 LAMC1P11047 1609 aa16.24■□□□□ 0.19
SPG11-216ENST00000559347 PRAG1Q86YV5 1406 aa16.24■□□□□ 0.19
SPG11-216ENST00000559347 ASXL1Q8IXJ9 1541 aa16.24■□□□□ 0.19
SPG11-216ENST00000559347 MED1Q15648 1581 aaPredicted RBP16.23■□□□□ 0.19
SPG11-216ENST00000559347 VGFO15240 615 aaPredicted RBP16.23■□□□□ 0.19
SPG11-216ENST00000559347 DCCP43146 1447 aa16.22■□□□□ 0.19
SPG11-216ENST00000559347 PTCH1Q13635 1447 aa16.22■□□□□ 0.19
SPG11-216ENST00000559347 FAM135BQ49AJ0 1406 aa16.22■□□□□ 0.19
SPG11-216ENST00000559347 AMOTL2Q9Y2J4 779 aa16.22■□□□□ 0.19
SPG11-216ENST00000559347 PHLPP1O60346 1717 aa16.22■□□□□ 0.19
SPG11-216ENST00000559347 MYOM2P54296 1465 aa16.22■□□□□ 0.19
SPG11-216ENST00000559347 PIK3C2GO75747 1445 aa16.21■□□□□ 0.19
SPG11-216ENST00000559347 ANKRD30BQ9BXX2 1392 aa16.21■□□□□ 0.19
SPG11-216ENST00000559347 HRCP23327 699 aa16.2■□□□□ 0.18
SPG11-216ENST00000559347 NRXN1Q9ULB1 1477 aa16.2■□□□□ 0.18
SPG11-216ENST00000559347 ADGRL3Q9HAR2 1447 aa16.19■□□□□ 0.18
SPG11-216ENST00000559347 COL16A1Q07092 1604 aaPredicted RBP16.19■□□□□ 0.18
SPG11-216ENST00000559347 ADGRF5Q8IZF2 1346 aa16.18■□□□□ 0.18
SPG11-216ENST00000559347 RGL3Q3MIN7 710 aa16.17■□□□□ 0.18
SPG11-216ENST00000559347 NHSL1Q5SYE7 1610 aa16.16■□□□□ 0.18
SPG11-216ENST00000559347 AHDC1Q5TGY3 1603 aaPredicted RBP16.16■□□□□ 0.18
SPG11-216ENST00000559347 DISP3Q9P2K9 1392 aa16.16■□□□□ 0.18
SPG11-216ENST00000559347 C14orf37Q86TY3 774 aa16.16■□□□□ 0.18
SPG11-216ENST00000559347 TECPR2O15040 1411 aa16.15■□□□□ 0.18
SPG11-216ENST00000559347 ROBO2Q9HCK4 1378 aa16.14■□□□□ 0.17
SPG11-216ENST00000559347 CDC42BPGQ6DT37 1551 aa16.14■□□□□ 0.17
SPG11-216ENST00000559347 MST1RQ04912 1400 aa16.14■□□□□ 0.17
SPG11-216ENST00000559347 C19orf44Q9H6X5 657 aa16.14■□□□□ 0.17
SPG11-216ENST00000559347 CADPS2Q86UW7 1296 aa16.13■□□□□ 0.17
SPG11-216ENST00000559347 SLAIN2Q9P270 581 aa16.13■□□□□ 0.17
SPG11-216ENST00000559347 SHPRHQ149N8 1683 aa16.11■□□□□ 0.17
SPG11-216ENST00000559347 ATF3P18847 181 aa16.1■□□□□ 0.17
SPG11-216ENST00000559347 ADGRB1O14514 1584 aa16.09■□□□□ 0.17
SPG11-216ENST00000559347 LRPPRCP42704 1394 aaKnown RBP16.09■□□□□ 0.17
SPG11-216ENST00000559347 FMN2Q9NZ56 1722 aa16.08■□□□□ 0.17
SPG11-216ENST00000559347 YTHDC2Q9H6S0 1430 aaKnown RBP16.08■□□□□ 0.16
SPG11-216ENST00000559347 KIAA1210Q9ULL0 1709 aa16.05■□□□□ 0.16
SPG11-216ENST00000559347 DLC1Q96QB1 1528 aa16.05■□□□□ 0.16
SPG11-216ENST00000559347 C1orf167Q5SNV9 1468 aa16.05■□□□□ 0.16
SPG11-216ENST00000559347 DHX57Q6P158 1386 aaKnown RBP16.05■□□□□ 0.16
SPG11-216ENST00000559347 ABCC11Q96J66 1382 aa16.05■□□□□ 0.16
SPG11-216ENST00000559347 BRINP3Q76B58 766 aa16.05■□□□□ 0.16
SPG11-216ENST00000559347 ARHGEF28Q8N1W1 1705 aaKnown RBP16.05■□□□□ 0.16
SPG11-216ENST00000559347 TMEM132EQ6IEE7 984 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms