RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 NUTM2DQ5VT03 806 aaPredicted RBP18.38■□□□□ 0.53
SYNE2-214ENST00000554928 RIMS2Q9UQ26 1411 aa18.37■□□□□ 0.53
SYNE2-214ENST00000554928 LTBP4Q8N2S1 1624 aa18.37■□□□□ 0.53
SYNE2-214ENST00000554928 SCAF1Q9H7N4 1312 aaKnown RBP18.36■□□□□ 0.53
SYNE2-214ENST00000554928 IQGAP1P46940 1657 aa18.35■□□□□ 0.53
SYNE2-214ENST00000554928 EID1Q9Y6B2 187 aa18.35■□□□□ 0.53
SYNE2-214ENST00000554928 HRCP23327 699 aa18.32■□□□□ 0.52
SYNE2-214ENST00000554928 CERKQ8TCT0 537 aa18.32■□□□□ 0.52
SYNE2-214ENST00000554928 SLC26A8Q96RN1 970 aa18.31■□□□□ 0.52
SYNE2-214ENST00000554928 ZNF326Q5BKZ1 582 aaKnown RBP18.29■□□□□ 0.52
SYNE2-214ENST00000554928 PPP1R15AO75807 674 aaPredicted RBP18.28■□□□□ 0.52
SYNE2-214ENST00000554928 TRIM26Q12899 539 aaPredicted RBP18.28■□□□□ 0.52
SYNE2-214ENST00000554928 PLEKHG1Q9ULL1 1385 aa18.28■□□□□ 0.52
SYNE2-214ENST00000554928 ACIN1Q9UKV3 1341 aaKnown RBP18.27■□□□□ 0.52
SYNE2-214ENST00000554928 CCDC144AA2RUR9 1427 aa18.27■□□□□ 0.52
SYNE2-214ENST00000554928 NEXMIFQ5QGS0 1516 aa18.27■□□□□ 0.51
SYNE2-214ENST00000554928 STRCP1A6NGW2 1772 aa18.27■□□□□ 0.51
SYNE2-214ENST00000554928 ANKRD30BQ9BXX2 1392 aa18.26■□□□□ 0.51
SYNE2-214ENST00000554928 SPATA31E1Q6ZUB1 1445 aa18.25■□□□□ 0.51
SYNE2-214ENST00000554928 ADAMTS13Q76LX8 1427 aa18.25■□□□□ 0.51
SYNE2-214ENST00000554928 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.25■□□□□ 0.51
SYNE2-214ENST00000554928 BCANQ96GW7 911 aa18.25■□□□□ 0.51
SYNE2-214ENST00000554928 KIF1BO60333 1816 aa18.23■□□□□ 0.51
SYNE2-214ENST00000554928 RGL3Q3MIN7 710 aa18.23■□□□□ 0.51
SYNE2-214ENST00000554928 ILDR1Q86SU0 546 aaPredicted RBP18.23■□□□□ 0.51
SYNE2-214ENST00000554928 HDGFP51858 240 aaKnown RBP18.22■□□□□ 0.51
SYNE2-214ENST00000554928 NRXN3Q9Y4C0 1643 aa18.21■□□□□ 0.51
SYNE2-214ENST00000554928 MAPK8IP2Q13387 824 aaPredicted RBP18.21■□□□□ 0.51
SYNE2-214ENST00000554928 CPS1P31327 1500 aa18.18■□□□□ 0.5
SYNE2-214ENST00000554928 LRRC7Q96NW7 1537 aa18.18■□□□□ 0.5
SYNE2-214ENST00000554928 RBM33Q96EV2 1170 aaKnown RBP18.18■□□□□ 0.5
SYNE2-214ENST00000554928 TBX22Q9Y458 520 aa18.18■□□□□ 0.5
SYNE2-214ENST00000554928 KCNA6P17658 529 aa18.17■□□□□ 0.5
SYNE2-214ENST00000554928 FBXO41Q8TF61 875 aa18.17■□□□□ 0.5
SYNE2-214ENST00000554928 ADGRF5Q8IZF2 1346 aa18.17■□□□□ 0.5
SYNE2-214ENST00000554928 SETBP1Q9Y6X0 1596 aa18.17■□□□□ 0.5
SYNE2-214ENST00000554928 PTPRUQ92729 1446 aa18.16■□□□□ 0.5
SYNE2-214ENST00000554928 RPGRIP1LQ68CZ1 1315 aa18.16■□□□□ 0.5
SYNE2-214ENST00000554928 PPLO60437 1756 aa18.15■□□□□ 0.5
SYNE2-214ENST00000554928 METP08581 1390 aa18.15■□□□□ 0.5
SYNE2-214ENST00000554928 NWD1Q149M9 1564 aa18.14■□□□□ 0.49
SYNE2-214ENST00000554928 VGFO15240 615 aaPredicted RBP18.13■□□□□ 0.49
SYNE2-214ENST00000554928 DHX57Q6P158 1386 aaKnown RBP18.13■□□□□ 0.49
SYNE2-214ENST00000554928 IQSEC2Q5JU85 1478 aa18.13■□□□□ 0.49
SYNE2-214ENST00000554928 DIP2AQ14689 1571 aa18.13■□□□□ 0.49
SYNE2-214ENST00000554928 IFT172Q9UG01 1749 aa18.12■□□□□ 0.49
SYNE2-214ENST00000554928 TMEM94Q12767 1356 aa18.11■□□□□ 0.49
SYNE2-214ENST00000554928 CHD2O14647 1828 aaKnown RBP18.09■□□□□ 0.49
SYNE2-214ENST00000554928 ALKQ9UM73 1620 aa18.09■□□□□ 0.49
SYNE2-214ENST00000554928 PROSER2Q86WR7 435 aaPredicted RBP18.09■□□□□ 0.49
SYNE2-214ENST00000554928 AMOTL2Q9Y2J4 779 aa18.09■□□□□ 0.49
SYNE2-214ENST00000554928 XIRP1Q702N8 1843 aaKnown RBP18.09■□□□□ 0.49
SYNE2-214ENST00000554928 SETD1AO15047 1707 aaKnown RBP18.09■□□□□ 0.49
SYNE2-214ENST00000554928 NKTRP30414 1462 aaKnown RBP18.08■□□□□ 0.49
SYNE2-214ENST00000554928 PIK3R4Q99570 1358 aa18.08■□□□□ 0.49
SYNE2-214ENST00000554928 UBAP1LF5GYI3 381 aa18.08■□□□□ 0.48
SYNE2-214ENST00000554928 SIN3AQ96ST3 1273 aa18.08■□□□□ 0.48
SYNE2-214ENST00000554928 PCGF6Q9BYE7 350 aa18.08■□□□□ 0.48
SYNE2-214ENST00000554928 PIK3C2GO75747 1445 aa18.06■□□□□ 0.48
SYNE2-214ENST00000554928 ASXL1Q8IXJ9 1541 aa18.05■□□□□ 0.48
SYNE2-214ENST00000554928 XRN1Q8IZH2 1706 aaKnown RBP18.05■□□□□ 0.48
SYNE2-214ENST00000554928 MYOM2P54296 1465 aa18.05■□□□□ 0.48
SYNE2-214ENST00000554928 NRXN1Q9ULB1 1477 aa18.05■□□□□ 0.48
SYNE2-214ENST00000554928 KDM2AQ9Y2K7 1162 aa18.04■□□□□ 0.48
SYNE2-214ENST00000554928 TMEM132EQ6IEE7 984 aa18.03■□□□□ 0.48
SYNE2-214ENST00000554928 DCAF11Q8TEB1 546 aa18.03■□□□□ 0.48
SYNE2-214ENST00000554928 CFAP70Q5T0N1 1121 aa18.02■□□□□ 0.48
SYNE2-214ENST00000554928 PIP4K2BP78356 416 aa18.01■□□□□ 0.47
SYNE2-214ENST00000554928 ROBO2Q9HCK4 1378 aa18.01■□□□□ 0.47
SYNE2-214ENST00000554928 NEUROD1Q13562 356 aa18■□□□□ 0.47
SYNE2-214ENST00000554928 C14orf93Q9H972 538 aaKnown RBP18■□□□□ 0.47
SYNE2-214ENST00000554928 TOM1O60784 492 aa17.98■□□□□ 0.47
SYNE2-214ENST00000554928 STK26Q9P289 416 aa17.98■□□□□ 0.47
SYNE2-214ENST00000554928 LRPPRCP42704 1394 aaKnown RBP17.95■□□□□ 0.46
SYNE2-214ENST00000554928 C14orf37Q86TY3 774 aa17.95■□□□□ 0.46
SYNE2-214ENST00000554928 L3MBTL2Q969R5 705 aa17.95■□□□□ 0.46
SYNE2-214ENST00000554928 PTCH1Q13635 1447 aa17.95■□□□□ 0.46
SYNE2-214ENST00000554928 MSH6P52701 1360 aa17.94■□□□□ 0.46
SYNE2-214ENST00000554928 PLEKHH1Q9ULM0 1364 aa17.94■□□□□ 0.46
SYNE2-214ENST00000554928 PRAG1Q86YV5 1406 aa17.94■□□□□ 0.46
SYNE2-214ENST00000554928 YTHDC2Q9H6S0 1430 aaKnown RBP17.94■□□□□ 0.46
SYNE2-214ENST00000554928 ADGRB1O14514 1584 aa17.93■□□□□ 0.46
SYNE2-214ENST00000554928 NCOA3Q9Y6Q9 1424 aa17.93■□□□□ 0.46
SYNE2-214ENST00000554928 PPP4R3CPQ6ZMV5 832 aa17.92■□□□□ 0.46
SYNE2-214ENST00000554928 WAPLQ7Z5K2 1190 aa17.92■□□□□ 0.46
SYNE2-214ENST00000554928 ABCC11Q96J66 1382 aa17.91■□□□□ 0.46
SYNE2-214ENST00000554928 TECPR2O15040 1411 aa17.91■□□□□ 0.46
SYNE2-214ENST00000554928 C19orf44Q9H6X5 657 aa17.91■□□□□ 0.46
SYNE2-214ENST00000554928 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.91■□□□□ 0.46
SYNE2-214ENST00000554928 ADGRL3Q9HAR2 1447 aa17.9■□□□□ 0.46
SYNE2-214ENST00000554928 HSPA1LP34931 641 aa17.9■□□□□ 0.46
SYNE2-214ENST00000554928 NALCNQ8IZF0 1738 aa17.89■□□□□ 0.46
SYNE2-214ENST00000554928 LAMC1P11047 1609 aa17.89■□□□□ 0.45
SYNE2-214ENST00000554928 NBPF1Q3BBV0 1214 aa17.88■□□□□ 0.45
SYNE2-214ENST00000554928 STAC3Q96MF2 364 aa17.88■□□□□ 0.45
SYNE2-214ENST00000554928 SLAIN2Q9P270 581 aa17.88■□□□□ 0.45
SYNE2-214ENST00000554928 KNDC1Q76NI1 1749 aa17.86■□□□□ 0.45
SYNE2-214ENST00000554928 ATF3P18847 181 aa17.86■□□□□ 0.45
SYNE2-214ENST00000554928 TRAK1Q9UPV9 953 aa17.86■□□□□ 0.45
SYNE2-214ENST00000554928 MST1RQ04912 1400 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms