RNA–Protein interactions for RNA: ENST00000549131.1

LINC00661-203, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best)

Gene LINC00661, Length 512 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-203ENST00000549131 KIF1BO60333 1816 aa22.17■■□□□ 1.14
LINC00661-203ENST00000549131 TRPM2O94759 1503 aa22.16■■□□□ 1.14
LINC00661-203ENST00000549131 PPP1R15AO75807 674 aaPredicted RBP22.15■■□□□ 1.14
LINC00661-203ENST00000549131 NWD1Q149M9 1564 aa22.15■■□□□ 1.14
LINC00661-203ENST00000549131 SCAF1Q9H7N4 1312 aaKnown RBP22.14■■□□□ 1.14
LINC00661-203ENST00000549131 BCANQ96GW7 911 aa22.14■■□□□ 1.13
LINC00661-203ENST00000549131 PLEKHG1Q9ULL1 1385 aa22.13■■□□□ 1.13
LINC00661-203ENST00000549131 ALKQ9UM73 1620 aa22.13■■□□□ 1.13
LINC00661-203ENST00000549131 SENP3Q9H4L4 574 aaPredicted RBP22.13■■□□□ 1.13
LINC00661-203ENST00000549131 SLC26A8Q96RN1 970 aa22.12■■□□□ 1.13
LINC00661-203ENST00000549131 CHD2O14647 1828 aaKnown RBP22.12■■□□□ 1.13
LINC00661-203ENST00000549131 TRIM52Q96A61 297 aa22.11■■□□□ 1.13
LINC00661-203ENST00000549131 TOM1O60784 492 aa22.1■■□□□ 1.13
LINC00661-203ENST00000549131 DIP2AQ14689 1571 aa22.1■■□□□ 1.13
LINC00661-203ENST00000549131 NKTRP30414 1462 aaKnown RBP22.09■■□□□ 1.13
LINC00661-203ENST00000549131 HDGFP51858 240 aaKnown RBP22.09■■□□□ 1.13
LINC00661-203ENST00000549131 PIP4K2BP78356 416 aa22.09■■□□□ 1.13
LINC00661-203ENST00000549131 NUTM2DQ5VT03 806 aaPredicted RBP22.07■■□□□ 1.12
LINC00661-203ENST00000549131 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.07■■□□□ 1.12
LINC00661-203ENST00000549131 KCNA6P17658 529 aa22.04■■□□□ 1.12
LINC00661-203ENST00000549131 NRXN3Q9Y4C0 1643 aa22.04■■□□□ 1.12
LINC00661-203ENST00000549131 NEXMIFQ5QGS0 1516 aa22.03■■□□□ 1.12
LINC00661-203ENST00000549131 SLC4A1APQ9BWU0 796 aaKnown RBP22.03■■□□□ 1.12
LINC00661-203ENST00000549131 TMEM94Q12767 1356 aa22.02■■□□□ 1.12
LINC00661-203ENST00000549131 ZNF326Q5BKZ1 582 aaKnown RBP22.02■■□□□ 1.12
LINC00661-203ENST00000549131 ADAMTS13Q76LX8 1427 aa22.02■■□□□ 1.12
LINC00661-203ENST00000549131 SETBP1Q9Y6X0 1596 aa22.01■■□□□ 1.11
LINC00661-203ENST00000549131 PPLO60437 1756 aa21.98■■□□□ 1.11
LINC00661-203ENST00000549131 PROSER2Q86WR7 435 aaPredicted RBP21.98■■□□□ 1.11
LINC00661-203ENST00000549131 HSPA1LP34931 641 aa21.97■■□□□ 1.11
LINC00661-203ENST00000549131 RBM33Q96EV2 1170 aaKnown RBP21.96■■□□□ 1.11
LINC00661-203ENST00000549131 XRN1Q8IZH2 1706 aaKnown RBP21.96■■□□□ 1.11
LINC00661-203ENST00000549131 DISP3Q9P2K9 1392 aa21.96■■□□□ 1.11
LINC00661-203ENST00000549131 TBX22Q9Y458 520 aa21.95■■□□□ 1.1
LINC00661-203ENST00000549131 ROBO1Q9Y6N7 1651 aa21.95■■□□□ 1.1
LINC00661-203ENST00000549131 PIK3R4Q99570 1358 aa21.94■■□□□ 1.1
LINC00661-203ENST00000549131 SETD5Q9C0A6 1442 aa21.93■■□□□ 1.1
LINC00661-203ENST00000549131 MSH6P52701 1360 aa21.92■■□□□ 1.1
LINC00661-203ENST00000549131 FOXD1Q16676 465 aa21.92■■□□□ 1.1
LINC00661-203ENST00000549131 SETD1AO15047 1707 aaKnown RBP21.92■■□□□ 1.1
LINC00661-203ENST00000549131 CCDC144AA2RUR9 1427 aa21.9■■□□□ 1.1
LINC00661-203ENST00000549131 IFT172Q9UG01 1749 aa21.9■■□□□ 1.1
LINC00661-203ENST00000549131 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.89■■□□□ 1.1
LINC00661-203ENST00000549131 MED1Q15648 1581 aaPredicted RBP21.89■■□□□ 1.09
LINC00661-203ENST00000549131 PTPRUQ92729 1446 aa21.89■■□□□ 1.09
LINC00661-203ENST00000549131 MPHOSPH9Q99550 1183 aa21.88■■□□□ 1.09
LINC00661-203ENST00000549131 RAB3GAP2Q9H2M9 1393 aa21.87■■□□□ 1.09
LINC00661-203ENST00000549131 C14orf37Q86TY3 774 aa21.86■■□□□ 1.09
LINC00661-203ENST00000549131 ACIN1Q9UKV3 1341 aaKnown RBP21.84■■□□□ 1.09
LINC00661-203ENST00000549131 NCOA3Q9Y6Q9 1424 aa21.84■■□□□ 1.09
LINC00661-203ENST00000549131 AMOTL2Q9Y2J4 779 aa21.84■■□□□ 1.09
LINC00661-203ENST00000549131 METP08581 1390 aa21.84■■□□□ 1.09
LINC00661-203ENST00000549131 FAM135BQ49AJ0 1406 aa21.83■■□□□ 1.09
LINC00661-203ENST00000549131 PHLPP1O60346 1717 aa21.83■■□□□ 1.08
LINC00661-203ENST00000549131 NALCNQ8IZF0 1738 aa21.83■■□□□ 1.08
LINC00661-203ENST00000549131 RPGRIP1LQ68CZ1 1315 aa21.8■■□□□ 1.08
LINC00661-203ENST00000549131 VGFO15240 615 aaPredicted RBP21.8■■□□□ 1.08
LINC00661-203ENST00000549131 SPATA31E1Q6ZUB1 1445 aa21.8■■□□□ 1.08
LINC00661-203ENST00000549131 DCCP43146 1447 aa21.75■■□□□ 1.07
LINC00661-203ENST00000549131 RGL3Q3MIN7 710 aa21.75■■□□□ 1.07
LINC00661-203ENST00000549131 SLAIN2Q9P270 581 aa21.75■■□□□ 1.07
LINC00661-203ENST00000549131 PTCH1Q13635 1447 aa21.73■■□□□ 1.07
LINC00661-203ENST00000549131 ATF3P18847 181 aa21.73■■□□□ 1.07
LINC00661-203ENST00000549131 CADPS2Q86UW7 1296 aa21.73■■□□□ 1.07
LINC00661-203ENST00000549131 C19orf44Q9H6X5 657 aa21.73■■□□□ 1.07
LINC00661-203ENST00000549131 COL16A1Q07092 1604 aaPredicted RBP21.73■■□□□ 1.07
LINC00661-203ENST00000549131 ADGRL3Q9HAR2 1447 aa21.72■■□□□ 1.07
LINC00661-203ENST00000549131 ANKRD30BQ9BXX2 1392 aa21.72■■□□□ 1.07
LINC00661-203ENST00000549131 LAMC1P11047 1609 aa21.7■■□□□ 1.06
LINC00661-203ENST00000549131 KNDC1Q76NI1 1749 aa21.7■■□□□ 1.06
LINC00661-203ENST00000549131 ILDR2Q71H61 639 aa21.7■■□□□ 1.06
LINC00661-203ENST00000549131 AHDC1Q5TGY3 1603 aaPredicted RBP21.69■■□□□ 1.06
LINC00661-203ENST00000549131 ADGRF5Q8IZF2 1346 aa21.69■■□□□ 1.06
LINC00661-203ENST00000549131 PRAG1Q86YV5 1406 aa21.69■■□□□ 1.06
LINC00661-203ENST00000549131 PIK3C2GO75747 1445 aa21.68■■□□□ 1.06
LINC00661-203ENST00000549131 ASXL1Q8IXJ9 1541 aa21.68■■□□□ 1.06
LINC00661-203ENST00000549131 ROBO2Q9HCK4 1378 aa21.67■■□□□ 1.06
LINC00661-203ENST00000549131 PHF23Q9BUL5 403 aaPredicted RBP21.67■■□□□ 1.06
LINC00661-203ENST00000549131 NHSL1Q5SYE7 1610 aa21.66■■□□□ 1.06
LINC00661-203ENST00000549131 MYOM2P54296 1465 aa21.66■■□□□ 1.06
LINC00661-203ENST00000549131 MST1RQ04912 1400 aa21.66■■□□□ 1.06
LINC00661-203ENST00000549131 SHPRHQ149N8 1683 aa21.63■■□□□ 1.05
LINC00661-203ENST00000549131 NRXN1Q9ULB1 1477 aa21.62■■□□□ 1.05
LINC00661-203ENST00000549131 CDC42BPGQ6DT37 1551 aa21.61■■□□□ 1.05
LINC00661-203ENST00000549131 HRCP23327 699 aa21.6■■□□□ 1.05
LINC00661-203ENST00000549131 BRINP3Q76B58 766 aa21.6■■□□□ 1.05
LINC00661-203ENST00000549131 JCADQ9P266 1359 aa21.6■■□□□ 1.05
LINC00661-203ENST00000549131 TECPR2O15040 1411 aa21.59■■□□□ 1.05
LINC00661-203ENST00000549131 LRPPRCP42704 1394 aaKnown RBP21.58■■□□□ 1.04
LINC00661-203ENST00000549131 STK26Q9P289 416 aa21.57■■□□□ 1.04
LINC00661-203ENST00000549131 YTHDC2Q9H6S0 1430 aaKnown RBP21.56■■□□□ 1.04
LINC00661-203ENST00000549131 C1orf167Q5SNV9 1468 aa21.56■■□□□ 1.04
LINC00661-203ENST00000549131 TMEM132EQ6IEE7 984 aa21.55■■□□□ 1.04
LINC00661-203ENST00000549131 FMN2Q9NZ56 1722 aa21.53■■□□□ 1.04
LINC00661-203ENST00000549131 ABCC11Q96J66 1382 aa21.51■■□□□ 1.03
LINC00661-203ENST00000549131 LRP6O75581 1613 aa21.51■■□□□ 1.03
LINC00661-203ENST00000549131 SOCS7O14512 581 aa21.5■■□□□ 1.03
LINC00661-203ENST00000549131 C14orf93Q9H972 538 aaKnown RBP21.5■■□□□ 1.03
LINC00661-203ENST00000549131 PLEKHH1Q9ULM0 1364 aa21.49■■□□□ 1.03
LINC00661-203ENST00000549131 CFAP70Q5T0N1 1121 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms