RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 TMEM131LA2VDJ0 1609 aa13.68□□□□□ -0.22
SNHG1-215ENST00000540904 RIMS2Q9UQ26 1411 aa13.68□□□□□ -0.22
SNHG1-215ENST00000540904 NUTM2DQ5VT03 806 aaPredicted RBP13.68□□□□□ -0.22
SNHG1-215ENST00000540904 BCANQ96GW7 911 aa13.68□□□□□ -0.22
SNHG1-215ENST00000540904 SPHKAPQ2M3C7 1700 aa13.67□□□□□ -0.22
SNHG1-215ENST00000540904 ZNF326Q5BKZ1 582 aaKnown RBP13.67□□□□□ -0.22
SNHG1-215ENST00000540904 TRPM2O94759 1503 aa13.67□□□□□ -0.22
SNHG1-215ENST00000540904 IQGAP1P46940 1657 aa13.66□□□□□ -0.22
SNHG1-215ENST00000540904 ZFYVE9O95405 1425 aa13.66□□□□□ -0.22
SNHG1-215ENST00000540904 LTBP4Q8N2S1 1624 aa13.66□□□□□ -0.22
SNHG1-215ENST00000540904 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.66□□□□□ -0.226e-32■□□□□ 8.9
SNHG1-215ENST00000540904 SLC26A8Q96RN1 970 aa13.66□□□□□ -0.22
SNHG1-215ENST00000540904 ILDR1Q86SU0 546 aaPredicted RBP13.65□□□□□ -0.22
SNHG1-215ENST00000540904 CLTCL1P53675 1640 aa13.64□□□□□ -0.23
SNHG1-215ENST00000540904 HRCP23327 699 aa13.64□□□□□ -0.23
SNHG1-215ENST00000540904 FBXO41Q8TF61 875 aa13.64□□□□□ -0.23
SNHG1-215ENST00000540904 PLEKHG1Q9ULL1 1385 aa13.62□□□□□ -0.23
SNHG1-215ENST00000540904 CCDC144AA2RUR9 1427 aa13.62□□□□□ -0.23
SNHG1-215ENST00000540904 MYO5BQ9ULV0 1848 aa13.62□□□□□ -0.23
SNHG1-215ENST00000540904 SCAF1Q9H7N4 1312 aaKnown RBP13.6□□□□□ -0.23
SNHG1-215ENST00000540904 CPS1P31327 1500 aa13.59□□□□□ -0.23
SNHG1-215ENST00000540904 TRIM26Q12899 539 aaPredicted RBP13.58□□□□□ -0.24
SNHG1-215ENST00000540904 RGL3Q3MIN7 710 aa13.58□□□□□ -0.24
SNHG1-215ENST00000540904 IQSEC2Q5JU85 1478 aa13.57□□□□□ -0.24
SNHG1-215ENST00000540904 KCNA6P17658 529 aa13.57□□□□□ -0.24
SNHG1-215ENST00000540904 TBX22Q9Y458 520 aa13.57□□□□□ -0.24
SNHG1-215ENST00000540904 VGFO15240 615 aaPredicted RBP13.56□□□□□ -0.24
SNHG1-215ENST00000540904 RPGRIP1LQ68CZ1 1315 aa13.56□□□□□ -0.24
SNHG1-215ENST00000540904 ADAMTS13Q76LX8 1427 aa13.56□□□□□ -0.24
SNHG1-215ENST00000540904 KIF1BO60333 1816 aa13.55□□□□□ -0.24
SNHG1-215ENST00000540904 NEXMIFQ5QGS0 1516 aa13.55□□□□□ -0.24
SNHG1-215ENST00000540904 UBAP1LF5GYI3 381 aa13.55□□□□□ -0.24
SNHG1-215ENST00000540904 ANKRD30BQ9BXX2 1392 aa13.54□□□□□ -0.24
SNHG1-215ENST00000540904 SPATA31E1Q6ZUB1 1445 aa13.54□□□□□ -0.24
SNHG1-215ENST00000540904 LRRC7Q96NW7 1537 aa13.54□□□□□ -0.24
SNHG1-215ENST00000540904 STRCP1A6NGW2 1772 aa13.53□□□□□ -0.24
SNHG1-215ENST00000540904 PROSER2Q86WR7 435 aaPredicted RBP13.53□□□□□ -0.24
SNHG1-215ENST00000540904 RBM33Q96EV2 1170 aaKnown RBP13.53□□□□□ -0.24
SNHG1-215ENST00000540904 DIP2AQ14689 1571 aa13.51□□□□□ -0.25
SNHG1-215ENST00000540904 SETBP1Q9Y6X0 1596 aa13.51□□□□□ -0.25
SNHG1-215ENST00000540904 METP08581 1390 aa13.5□□□□□ -0.25
SNHG1-215ENST00000540904 TMEM94Q12767 1356 aa13.5□□□□□ -0.25
SNHG1-215ENST00000540904 PIK3R4Q99570 1358 aa13.5□□□□□ -0.25
SNHG1-215ENST00000540904 ADGRF5Q8IZF2 1346 aa13.5□□□□□ -0.25
SNHG1-215ENST00000540904 TOM1O60784 492 aa13.5□□□□□ -0.25
SNHG1-215ENST00000540904 NKTRP30414 1462 aaKnown RBP13.49□□□□□ -0.25
SNHG1-215ENST00000540904 PIP4K2BP78356 416 aa13.49□□□□□ -0.25
SNHG1-215ENST00000540904 AMOTL2Q9Y2J4 779 aa13.49□□□□□ -0.25
SNHG1-215ENST00000540904 NRXN3Q9Y4C0 1643 aa13.49□□□□□ -0.25
SNHG1-215ENST00000540904 NWD1Q149M9 1564 aa13.49□□□□□ -0.25
SNHG1-215ENST00000540904 PTPRUQ92729 1446 aa13.48□□□□□ -0.25
SNHG1-215ENST00000540904 C14orf37Q86TY3 774 aa13.46□□□□□ -0.25
SNHG1-215ENST00000540904 PPLO60437 1756 aa13.45□□□□□ -0.26
SNHG1-215ENST00000540904 CHD2O14647 1828 aaKnown RBP13.45□□□□□ -0.26
SNHG1-215ENST00000540904 ALKQ9UM73 1620 aa13.45□□□□□ -0.26
SNHG1-215ENST00000540904 DCAF11Q8TEB1 546 aa13.44□□□□□ -0.26
SNHG1-215ENST00000540904 KDM2AQ9Y2K7 1162 aa13.44□□□□□ -0.26
SNHG1-215ENST00000540904 MSH6P52701 1360 aa13.44□□□□□ -0.26
SNHG1-215ENST00000540904 PIK3C2GO75747 1445 aa13.42□□□□□ -0.26
SNHG1-215ENST00000540904 NCOA3Q9Y6Q9 1424 aa13.41□□□□□ -0.26
SNHG1-215ENST00000540904 TMEM132EQ6IEE7 984 aa13.41□□□□□ -0.26
SNHG1-215ENST00000540904 DHX57Q6P158 1386 aaKnown RBP13.41□□□□□ -0.26
SNHG1-215ENST00000540904 MYOM2P54296 1465 aa13.41□□□□□ -0.26
SNHG1-215ENST00000540904 XIRP1Q702N8 1843 aaKnown RBP13.41□□□□□ -0.26
SNHG1-215ENST00000540904 IFT172Q9UG01 1749 aa13.4□□□□□ -0.26
SNHG1-215ENST00000540904 CFAP70Q5T0N1 1121 aa13.4□□□□□ -0.26
SNHG1-215ENST00000540904 SIN3AQ96ST3 1273 aa13.4□□□□□ -0.26
SNHG1-215ENST00000540904 C19orf44Q9H6X5 657 aa13.4□□□□□ -0.26
SNHG1-215ENST00000540904 C14orf93Q9H972 538 aaKnown RBP13.4□□□□□ -0.26
SNHG1-215ENST00000540904 STK26Q9P289 416 aa13.4□□□□□ -0.26
SNHG1-215ENST00000540904 XRN1Q8IZH2 1706 aaKnown RBP13.39□□□□□ -0.27
SNHG1-215ENST00000540904 NEUROD1Q13562 356 aa13.39□□□□□ -0.27
SNHG1-215ENST00000540904 PCGF6Q9BYE7 350 aa13.39□□□□□ -0.27
SNHG1-215ENST00000540904 NRXN1Q9ULB1 1477 aa13.39□□□□□ -0.27
SNHG1-215ENST00000540904 ROBO2Q9HCK4 1378 aa13.38□□□□□ -0.27
SNHG1-215ENST00000540904 ATF3P18847 181 aa13.38□□□□□ -0.27
SNHG1-215ENST00000540904 STAC3Q96MF2 364 aa13.38□□□□□ -0.27
SNHG1-215ENST00000540904 SETD1AO15047 1707 aaKnown RBP13.38□□□□□ -0.27
SNHG1-215ENST00000540904 HSPA1LP34931 641 aa13.37□□□□□ -0.27
SNHG1-215ENST00000540904 CADPS2Q86UW7 1296 aa13.37□□□□□ -0.27
SNHG1-215ENST00000540904 SLAIN2Q9P270 581 aa13.37□□□□□ -0.27
SNHG1-215ENST00000540904 PTCH1Q13635 1447 aa13.37□□□□□ -0.27
SNHG1-215ENST00000540904 LRPPRCP42704 1394 aaKnown RBP13.36□□□□□ -0.27
SNHG1-215ENST00000540904 ASXL1Q8IXJ9 1541 aa13.35□□□□□ -0.27
SNHG1-215ENST00000540904 ABCC11Q96J66 1382 aa13.34□□□□□ -0.27
SNHG1-215ENST00000540904 FAM135BQ49AJ0 1406 aa13.34□□□□□ -0.27
SNHG1-215ENST00000540904 PRAG1Q86YV5 1406 aa13.34□□□□□ -0.27
SNHG1-215ENST00000540904 YTHDC2Q9H6S0 1430 aaKnown RBP13.34□□□□□ -0.27
SNHG1-215ENST00000540904 WAPLQ7Z5K2 1190 aa13.34□□□□□ -0.27
SNHG1-215ENST00000540904 L3MBTL2Q969R5 705 aa13.34□□□□□ -0.27
SNHG1-215ENST00000540904 ADGRL3Q9HAR2 1447 aa13.33□□□□□ -0.28
SNHG1-215ENST00000540904 TECPR2O15040 1411 aa13.32□□□□□ -0.28
SNHG1-215ENST00000540904 DCCP43146 1447 aa13.32□□□□□ -0.28
SNHG1-215ENST00000540904 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.32□□□□□ -0.28
SNHG1-215ENST00000540904 LAMC1P11047 1609 aa13.31□□□□□ -0.28
SNHG1-215ENST00000540904 PLEKHH1Q9ULM0 1364 aa13.31□□□□□ -0.28
SNHG1-215ENST00000540904 TRAK1Q9UPV9 953 aa13.3□□□□□ -0.28
SNHG1-215ENST00000540904 ROBO1Q9Y6N7 1651 aa13.29□□□□□ -0.28
SNHG1-215ENST00000540904 SAFB2Q14151 953 aaKnown RBP eCLIP13.29□□□□□ -0.28
SNHG1-215ENST00000540904 SIRT1Q96EB6 747 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms