RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 PLEKHG1Q9ULL1 1385 aa28.52■■■□□ 2.16
CLIP1-211ENST00000539080 TRIM52Q96A61 297 aa28.52■■■□□ 2.16
CLIP1-211ENST00000539080 TRPM2O94759 1503 aa28.52■■■□□ 2.16
CLIP1-211ENST00000539080 PPP1R15AO75807 674 aaPredicted RBP28.49■■■□□ 2.15
CLIP1-211ENST00000539080 TOM1O60784 492 aa28.47■■■□□ 2.15
CLIP1-211ENST00000539080 SLC26A8Q96RN1 970 aa28.46■■■□□ 2.15
CLIP1-211ENST00000539080 ACIN1Q9UKV3 1341 aaKnown RBP28.45■■■□□ 2.15
CLIP1-211ENST00000539080 CLTCL1P53675 1640 aa28.45■■■□□ 2.14
CLIP1-211ENST00000539080 BCANQ96GW7 911 aa28.45■■■□□ 2.14
CLIP1-211ENST00000539080 SLC4A1APQ9BWU0 796 aaKnown RBP28.45■■■□□ 2.14
CLIP1-211ENST00000539080 KCNA6P17658 529 aa28.44■■■□□ 2.14
CLIP1-211ENST00000539080 NWD1Q149M9 1564 aa28.43■■■□□ 2.14
CLIP1-211ENST00000539080 DIP2AQ14689 1571 aa28.41■■■□□ 2.14
CLIP1-211ENST00000539080 KIF1BO60333 1816 aa28.41■■■□□ 2.14
CLIP1-211ENST00000539080 NKTRP30414 1462 aaKnown RBP28.4■■■□□ 2.14
CLIP1-211ENST00000539080 TBX22Q9Y458 520 aa28.4■■■□□ 2.14
CLIP1-211ENST00000539080 XIRP1Q702N8 1843 aaKnown RBP28.39■■■□□ 2.14
CLIP1-211ENST00000539080 SETD5Q9C0A6 1442 aa28.37■■■□□ 2.13
CLIP1-211ENST00000539080 ALKQ9UM73 1620 aa28.37■■■□□ 2.13
CLIP1-211ENST00000539080 CHD2O14647 1828 aaKnown RBP28.37■■■□□ 2.13
CLIP1-211ENST00000539080 ADAMTS13Q76LX8 1427 aa28.36■■■□□ 2.13
CLIP1-211ENST00000539080 ZNF326Q5BKZ1 582 aaKnown RBP28.34■■■□□ 2.13
CLIP1-211ENST00000539080 NUTM2DQ5VT03 806 aaPredicted RBP28.34■■■□□ 2.13
CLIP1-211ENST00000539080 PIK3R4Q99570 1358 aa28.34■■■□□ 2.13
CLIP1-211ENST00000539080 PIP4K2BP78356 416 aa28.32■■■□□ 2.12
CLIP1-211ENST00000539080 TMEM94Q12767 1356 aa28.32■■■□□ 2.12
CLIP1-211ENST00000539080 NEXMIFQ5QGS0 1516 aa28.32■■■□□ 2.12
CLIP1-211ENST00000539080 SETBP1Q9Y6X0 1596 aa28.32■■■□□ 2.12
CLIP1-211ENST00000539080 SCAF1Q9H7N4 1312 aaKnown RBP28.3■■■□□ 2.12
CLIP1-211ENST00000539080 PROSER2Q86WR7 435 aaPredicted RBP28.3■■■□□ 2.12
CLIP1-211ENST00000539080 MPHOSPH9Q99550 1183 aa28.3■■■□□ 2.12
CLIP1-211ENST00000539080 SENP3Q9H4L4 574 aaPredicted RBP28.3■■■□□ 2.12
CLIP1-211ENST00000539080 NRXN3Q9Y4C0 1643 aa28.29■■■□□ 2.12
CLIP1-211ENST00000539080 RPGRIP1LQ68CZ1 1315 aa28.24■■■□□ 2.11
CLIP1-211ENST00000539080 CCDC144AA2RUR9 1427 aa28.24■■■□□ 2.11
CLIP1-211ENST00000539080 NCOA3Q9Y6Q9 1424 aa28.24■■■□□ 2.11
CLIP1-211ENST00000539080 RAB3GAP2Q9H2M9 1393 aa28.24■■■□□ 2.11
CLIP1-211ENST00000539080 FOXD1Q16676 465 aa28.23■■■□□ 2.11
CLIP1-211ENST00000539080 VGFO15240 615 aaPredicted RBP28.2■■■□□ 2.1
CLIP1-211ENST00000539080 HSPA1LP34931 641 aa28.2■■■□□ 2.1
CLIP1-211ENST00000539080 MSH6P52701 1360 aa28.19■■■□□ 2.1
CLIP1-211ENST00000539080 PPLO60437 1756 aa28.19■■■□□ 2.1
CLIP1-211ENST00000539080 XRN1Q8IZH2 1706 aaKnown RBP28.16■■■□□ 2.1
CLIP1-211ENST00000539080 RBM33Q96EV2 1170 aaKnown RBP28.16■■■□□ 2.1
CLIP1-211ENST00000539080 AMOTL2Q9Y2J4 779 aa28.16■■■□□ 2.1
CLIP1-211ENST00000539080 PTPRUQ92729 1446 aa28.16■■■□□ 2.1
CLIP1-211ENST00000539080 HRCP23327 699 aa28.15■■■□□ 2.1
CLIP1-211ENST00000539080 FAM135BQ49AJ0 1406 aa28.15■■■□□ 2.1
CLIP1-211ENST00000539080 SPATA31E1Q6ZUB1 1445 aa28.14■■■□□ 2.1
CLIP1-211ENST00000539080 METP08581 1390 aa28.12■■■□□ 2.09
CLIP1-211ENST00000539080 SETD1AO15047 1707 aaKnown RBP28.1■■■□□ 2.09
CLIP1-211ENST00000539080 IFT172Q9UG01 1749 aa28.09■■■□□ 2.09
CLIP1-211ENST00000539080 ROBO1Q9Y6N7 1651 aa28.07■■■□□ 2.08
CLIP1-211ENST00000539080 C19orf44Q9H6X5 657 aa28.07■■■□□ 2.08
CLIP1-211ENST00000539080 ANKRD30BQ9BXX2 1392 aa28.07■■■□□ 2.08
CLIP1-211ENST00000539080 DISP3Q9P2K9 1392 aa28.07■■■□□ 2.08
CLIP1-211ENST00000539080 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.06■■■□□ 2.08
CLIP1-211ENST00000539080 C14orf37Q86TY3 774 aa28.06■■■□□ 2.08
CLIP1-211ENST00000539080 SLAIN2Q9P270 581 aa28.04■■■□□ 2.08
CLIP1-211ENST00000539080 RGL3Q3MIN7 710 aa28.03■■■□□ 2.08
CLIP1-211ENST00000539080 CADPS2Q86UW7 1296 aa28.03■■■□□ 2.08
CLIP1-211ENST00000539080 DCCP43146 1447 aa28.02■■■□□ 2.08
CLIP1-211ENST00000539080 PRAG1Q86YV5 1406 aa28.02■■■□□ 2.08
CLIP1-211ENST00000539080 PTCH1Q13635 1447 aa28■■■□□ 2.07
CLIP1-211ENST00000539080 ATF3P18847 181 aa27.99■■■□□ 2.07
CLIP1-211ENST00000539080 ADGRF5Q8IZF2 1346 aa27.98■■■□□ 2.07
CLIP1-211ENST00000539080 MED1Q15648 1581 aaPredicted RBP27.96■■■□□ 2.07
CLIP1-211ENST00000539080 ADGRL3Q9HAR2 1447 aa27.95■■■□□ 2.07
CLIP1-211ENST00000539080 PIK3C2GO75747 1445 aa27.94■■■□□ 2.06
CLIP1-211ENST00000539080 MYOM2P54296 1465 aa27.93■■■□□ 2.06
CLIP1-211ENST00000539080 NALCNQ8IZF0 1738 aa27.92■■■□□ 2.06
CLIP1-211ENST00000539080 NRXN1Q9ULB1 1477 aa27.9■■■□□ 2.06
CLIP1-211ENST00000539080 PHLPP1O60346 1717 aa27.9■■■□□ 2.06
CLIP1-211ENST00000539080 ROBO2Q9HCK4 1378 aa27.89■■■□□ 2.06
CLIP1-211ENST00000539080 LAMC1P11047 1609 aa27.88■■■□□ 2.05
CLIP1-211ENST00000539080 MST1RQ04912 1400 aa27.86■■■□□ 2.05
CLIP1-211ENST00000539080 AHDC1Q5TGY3 1603 aaPredicted RBP27.85■■■□□ 2.05
CLIP1-211ENST00000539080 TECPR2O15040 1411 aa27.85■■■□□ 2.05
CLIP1-211ENST00000539080 KNDC1Q76NI1 1749 aa27.85■■■□□ 2.05
CLIP1-211ENST00000539080 ASXL1Q8IXJ9 1541 aa27.84■■■□□ 2.05
CLIP1-211ENST00000539080 LRPPRCP42704 1394 aaKnown RBP27.84■■■□□ 2.05
CLIP1-211ENST00000539080 COL16A1Q07092 1604 aaPredicted RBP27.83■■■□□ 2.05
CLIP1-211ENST00000539080 C14orf93Q9H972 538 aaKnown RBP27.82■■■□□ 2.04
CLIP1-211ENST00000539080 ABCC11Q96J66 1382 aa27.82■■■□□ 2.04
CLIP1-211ENST00000539080 BRINP3Q76B58 766 aa27.81■■■□□ 2.04
CLIP1-211ENST00000539080 STAC3Q96MF2 364 aa27.81■■■□□ 2.04
CLIP1-211ENST00000539080 YTHDC2Q9H6S0 1430 aaKnown RBP27.78■■■□□ 2.04
CLIP1-211ENST00000539080 JCADQ9P266 1359 aa27.78■■■□□ 2.04
CLIP1-211ENST00000539080 TMEM132EQ6IEE7 984 aa27.77■■■□□ 2.04
CLIP1-211ENST00000539080 ILDR2Q71H61 639 aa27.77■■■□□ 2.04
CLIP1-211ENST00000539080 NHSL1Q5SYE7 1610 aa27.76■■■□□ 2.03
CLIP1-211ENST00000539080 CDC42BPGQ6DT37 1551 aa27.76■■■□□ 2.03
CLIP1-211ENST00000539080 STK26Q9P289 416 aa27.75■■■□□ 2.03
CLIP1-211ENST00000539080 C1orf167Q5SNV9 1468 aa27.75■■■□□ 2.03
CLIP1-211ENST00000539080 DHX57Q6P158 1386 aaKnown RBP27.74■■■□□ 2.03
CLIP1-211ENST00000539080 CFAP70Q5T0N1 1121 aa27.74■■■□□ 2.03
CLIP1-211ENST00000539080 SIRT1Q96EB6 747 aa27.74■■■□□ 2.03
CLIP1-211ENST00000539080 PHF23Q9BUL5 403 aaPredicted RBP27.74■■■□□ 2.03
CLIP1-211ENST00000539080 DCAF11Q8TEB1 546 aa27.72■■■□□ 2.03
CLIP1-211ENST00000539080 SHPRHQ149N8 1683 aa27.71■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 223.5 ms