RNA–Protein interactions for RNA: ENST00000536212.1

VPS33A-203, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-203ENST00000536212 WNT2BQ93097 391 aa8.21□□□□□ -1.1
VPS33A-203ENST00000536212 FHOD3Q2V2M9 1422 aa8.2□□□□□ -1.1
VPS33A-203ENST00000536212 E2F4Q16254 413 aa8.2□□□□□ -1.1
VPS33A-203ENST00000536212 FMN1Q68DA7 1419 aa8.2□□□□□ -1.1
VPS33A-203ENST00000536212 SNAPC4Q5SXM2 1469 aa8.19□□□□□ -1.1
VPS33A-203ENST00000536212 ITGAEP38570 1179 aa8.19□□□□□ -1.1
VPS33A-203ENST00000536212 WDR97A6NE52 1622 aa8.18□□□□□ -1.1
VPS33A-203ENST00000536212 GOLGA8CPA6NN73 597 aa8.18□□□□□ -1.1
VPS33A-203ENST00000536212 PDE4AP27815 886 aa8.18□□□□□ -1.1
VPS33A-203ENST00000536212 MRPL50Q8N5N7 158 aaKnown RBP8.18□□□□□ -1.1
VPS33A-203ENST00000536212 OXER1Q8TDS5 423 aa8.18□□□□□ -1.1
VPS33A-203ENST00000536212 ARHGEF1Q92888 912 aaKnown RBP8.18□□□□□ -1.1
VPS33A-203ENST00000536212 ZBED2Q9BTP6 218 aa8.18□□□□□ -1.1
VPS33A-203ENST00000536212 LAMC3Q9Y6N6 1575 aa8.18□□□□□ -1.1
VPS33A-203ENST00000536212 FAM50AQ14320 339 aaKnown RBP8.17□□□□□ -1.1
VPS33A-203ENST00000536212 ZNF454Q8N9F8 522 aa8.17□□□□□ -1.1
VPS33A-203ENST00000536212 LARP6Q9BRS8 491 aaKnown RBP8.17□□□□□ -1.1
VPS33A-203ENST00000536212 NCKAP5LQ9HCH0 1330 aa8.17□□□□□ -1.1
VPS33A-203ENST00000536212 FGD6Q6ZV73 1430 aa8.17□□□□□ -1.1
VPS33A-203ENST00000536212 URB2Q14146 1524 aaKnown RBP8.17□□□□□ -1.1
VPS33A-203ENST00000536212 SAMD9Q5K651 1589 aa8.17□□□□□ -1.1
VPS33A-203ENST00000536212 THOC2Q8NI27 1593 aaKnown RBP8.17□□□□□ -1.1
VPS33A-203ENST00000536212 CTTNBP2Q8WZ74 1663 aa8.17□□□□□ -1.1
VPS33A-203ENST00000536212 PPP1R15AO75807 674 aaPredicted RBP8.16□□□□□ -1.1
VPS33A-203ENST00000536212 ITGBL1O95965 494 aaPredicted RBP8.16□□□□□ -1.1
VPS33A-203ENST00000536212 PTPREP23469 700 aa8.16□□□□□ -1.1
VPS33A-203ENST00000536212 TMEM132AQ24JP5 1023 aa8.16□□□□□ -1.1
VPS33A-203ENST00000536212 ABCA5Q8WWZ7 1642 aa8.16□□□□□ -1.1
VPS33A-203ENST00000536212 NESP48681 1621 aa8.15□□□□□ -1.1
VPS33A-203ENST00000536212 GRIN2BQ13224 1484 aa8.15□□□□□ -1.1
VPS33A-203ENST00000536212 HFM1A2PYH4 1435 aa8.15□□□□□ -1.1
VPS33A-203ENST00000536212 FOSBP53539 338 aa8.15□□□□□ -1.1
VPS33A-203ENST00000536212 Q6ZNB5 142 aa8.15□□□□□ -1.1
VPS33A-203ENST00000536212 SIN3AQ96ST3 1273 aa8.15□□□□□ -1.1
VPS33A-203ENST00000536212 MFSD10Q14728 455 aa8.14□□□□□ -1.11
VPS33A-203ENST00000536212 NBPF3Q9H094 633 aa8.14□□□□□ -1.11
VPS33A-203ENST00000536212 CRISPLD2Q9H0B8 497 aa8.14□□□□□ -1.11
VPS33A-203ENST00000536212 SUPT16HQ9Y5B9 1047 aaKnown RBP8.14□□□□□ -1.11
VPS33A-203ENST00000536212 ARHGEF11O15085 1522 aa8.13□□□□□ -1.11
VPS33A-203ENST00000536212 UACAQ9BZF9 1416 aa8.13□□□□□ -1.11
VPS33A-203ENST00000536212 LMOD2Q6P5Q4 547 aa8.13□□□□□ -1.11
VPS33A-203ENST00000536212 C14orf37Q86TY3 774 aa8.13□□□□□ -1.11
VPS33A-203ENST00000536212 DDX27Q96GQ7 796 aaKnown RBP8.13□□□□□ -1.11
VPS33A-203ENST00000536212 GAPVD1Q14C86 1478 aa8.13□□□□□ -1.11
VPS33A-203ENST00000536212 PTPRKQ15262 1439 aa8.12□□□□□ -1.11
VPS33A-203ENST00000536212 CCER2I3L3R5 266 aa8.12□□□□□ -1.11
VPS33A-203ENST00000536212 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.12□□□□□ -1.11
VPS33A-203ENST00000536212 EHBP1L1Q8N3D4 1523 aa8.12□□□□□ -1.11
VPS33A-203ENST00000536212 MYOM3Q5VTT5 1437 aa8.12□□□□□ -1.11
VPS33A-203ENST00000536212 PDS5BQ9NTI5 1447 aa8.12□□□□□ -1.11
VPS33A-203ENST00000536212 MTUS2Q5JR59 1369 aa8.11□□□□□ -1.11
VPS33A-203ENST00000536212 TCOF1Q13428 1488 aaKnown RBP8.11□□□□□ -1.11
VPS33A-203ENST00000536212 NCOA2Q15596 1464 aa8.11□□□□□ -1.11
VPS33A-203ENST00000536212 CCDC18Q5T9S5 1454 aa8.11□□□□□ -1.11
VPS33A-203ENST00000536212 NAIPQ13075 1403 aa8.11□□□□□ -1.11
VPS33A-203ENST00000536212 AKNAQ7Z591 1439 aa8.11□□□□□ -1.11
VPS33A-203ENST00000536212 PTPN23Q9H3S7 1636 aa8.11□□□□□ -1.11
VPS33A-203ENST00000536212 UGGT2Q9NYU1 1516 aa8.1□□□□□ -1.11
VPS33A-203ENST00000536212 ATP1B4Q9UN42 357 aaPredicted RBP8.1□□□□□ -1.11
VPS33A-203ENST00000536212 TDRD9Q8NDG6 1382 aaKnown RBP8.1□□□□□ -1.11
VPS33A-203ENST00000536212 KIF21AQ7Z4S6 1674 aa8.09□□□□□ -1.11
VPS33A-203ENST00000536212 DDX10Q13206 875 aaKnown RBP8.09□□□□□ -1.11
VPS33A-203ENST00000536212 UPF1Q92900 1129 aaKnown RBP eCLIP8.09□□□□□ -1.11
VPS33A-203ENST00000536212 JPH4Q96JJ6 628 aa8.09□□□□□ -1.11
VPS33A-203ENST00000536212 ANO8Q9HCE9 1232 aaPredicted RBP8.09□□□□□ -1.11
VPS33A-203ENST00000536212 SEMA3EO15041 775 aa8.08□□□□□ -1.12
VPS33A-203ENST00000536212 LAPTM4AQ15012 233 aa8.08□□□□□ -1.12
VPS33A-203ENST00000536212 KDM5BQ9UGL1 1544 aa8.08□□□□□ -1.12
VPS33A-203ENST00000536212 TARBP1Q13395 1621 aaKnown RBP8.07□□□□□ -1.12
VPS33A-203ENST00000536212 SUPT6HQ7KZ85 1726 aaKnown RBP8.07□□□□□ -1.12
VPS33A-203ENST00000536212 LRRIQ1Q96JM4 1722 aa8.07□□□□□ -1.12
VPS33A-203ENST00000536212 TESPA1A2RU30 521 aaPredicted RBP8.07□□□□□ -1.12
VPS33A-203ENST00000536212 CAMK2BQ13554 666 aa8.07□□□□□ -1.12
VPS33A-203ENST00000536212 NYAP1Q6ZVC0 841 aa8.07□□□□□ -1.12
VPS33A-203ENST00000536212 ZDHHC16Q969W1 377 aa8.07□□□□□ -1.12
VPS33A-203ENST00000536212 ADAM33Q9BZ11 813 aa8.07□□□□□ -1.12
VPS33A-203ENST00000536212 ARIH1Q9Y4X5 557 aaPredicted RBP8.07□□□□□ -1.12
VPS33A-203ENST00000536212 TONSLQ96HA7 1378 aa8.07□□□□□ -1.12
VPS33A-203ENST00000536212 MIA2Q96PC5 1412 aa8.06□□□□□ -1.12
VPS33A-203ENST00000536212 ANKK1Q8NFD2 765 aa8.06□□□□□ -1.12
VPS33A-203ENST00000536212 MAGI3Q5TCQ9 1506 aa8.06□□□□□ -1.12
VPS33A-203ENST00000536212 PPP1R15BQ5SWA1 713 aa8.05□□□□□ -1.12
VPS33A-203ENST00000536212 RABGEF1Q9UJ41 708 aa8.05□□□□□ -1.12
VPS33A-203ENST00000536212 HECW1Q76N89 1606 aa8.04□□□□□ -1.12
VPS33A-203ENST00000536212 LCE2BO14633 110 aa8.04□□□□□ -1.12
VPS33A-203ENST00000536212 ANP32CO43423 234 aa8.04□□□□□ -1.12
VPS33A-203ENST00000536212 SMYD5Q6GMV2 418 aa8.04□□□□□ -1.12
VPS33A-203ENST00000536212 DENND4BO75064 1496 aaPredicted RBP8.04□□□□□ -1.12
VPS33A-203ENST00000536212 GCC2Q8IWJ2 1684 aa8.03□□□□□ -1.12
VPS33A-203ENST00000536212 PPP1R3GB7ZBB8 358 aa8.03□□□□□ -1.12
VPS33A-203ENST00000536212 EPRSP07814 1512 aaKnown RBP8.03□□□□□ -1.12
VPS33A-203ENST00000536212 ADAMTS12P58397 1594 aa8.02□□□□□ -1.13
VPS33A-203ENST00000536212 SOWAHBA6NEL2 793 aa8.02□□□□□ -1.13
VPS33A-203ENST00000536212 KCNC4Q03721 635 aa8.02□□□□□ -1.13
VPS33A-203ENST00000536212 TRAF7Q6Q0C0 670 aa8.02□□□□□ -1.13
VPS33A-203ENST00000536212 LAPTM4BQ86VI4 370 aa8.02□□□□□ -1.13
VPS33A-203ENST00000536212 WDR62O43379 1518 aa8.02□□□□□ -1.13
VPS33A-203ENST00000536212 IQGAP2Q13576 1575 aa8.01□□□□□ -1.13
VPS33A-203ENST00000536212 ROCK1Q13464 1354 aa8.01□□□□□ -1.13
VPS33A-203ENST00000536212 EVI5O60447 810 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms