RNA–Protein interactions for RNA: ENST00000536212.1

VPS33A-203, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-203ENST00000536212 AEBP2Q6ZN18 517 aaPredicted RBP20.75■□□□□ 0.91
VPS33A-203ENST00000536212 CHIC1Q5VXU3 224 aa19.41■□□□□ 0.7
VPS33A-203ENST00000536212 SENP3Q9H4L4 574 aaPredicted RBP17.8■□□□□ 0.44
VPS33A-203ENST00000536212 PHF23Q9BUL5 403 aaPredicted RBP17.49■□□□□ 0.39
VPS33A-203ENST00000536212 FOXD1Q16676 465 aa16.62■□□□□ 0.25
VPS33A-203ENST00000536212 POTEDQ86YR6 584 aa16.08■□□□□ 0.16
VPS33A-203ENST00000536212 MSH5O43196 834 aa15.75■□□□□ 0.11
VPS33A-203ENST00000536212 PIAS4Q8N2W9 510 aaPredicted RBP15.41■□□□□ 0.06
VPS33A-203ENST00000536212 PLPPR3Q6T4P5 718 aa15.24■□□□□ 0.03
VPS33A-203ENST00000536212 PPP6R1Q9UPN7 881 aa15.2■□□□□ 0.02
VPS33A-203ENST00000536212 ADRA2BP18089 450 aa15.1■□□□□ 0.01
VPS33A-203ENST00000536212 DMRT2Q9Y5R5 561 aa14.05□□□□□ -0.16
VPS33A-203ENST00000536212 MAPK8IP2Q13387 824 aaPredicted RBP14□□□□□ -0.17
VPS33A-203ENST00000536212 SCAF1Q9H7N4 1312 aaKnown RBP13.87□□□□□ -0.19
VPS33A-203ENST00000536212 CACNB1Q02641 598 aaPredicted RBP13.73□□□□□ -0.21
VPS33A-203ENST00000536212 DCAF8L1A6NGE4 600 aa13.41□□□□□ -0.26
VPS33A-203ENST00000536212 RNF39Q9H2S5 420 aa13.39□□□□□ -0.27
VPS33A-203ENST00000536212 HOXD11P31277 338 aaPredicted RBP13.37□□□□□ -0.27
VPS33A-203ENST00000536212 PPP4R3CPQ6ZMV5 832 aa13.28□□□□□ -0.28
VPS33A-203ENST00000536212 C1QBPQ07021 282 aaKnown RBP13.19□□□□□ -0.3
VPS33A-203ENST00000536212 CNKSR2Q8WXI2 1034 aa13.15□□□□□ -0.3
VPS33A-203ENST00000536212 RNF216Q9NWF9 866 aaPredicted RBP13.15□□□□□ -0.3
VPS33A-203ENST00000536212 DNAJC5BQ9UF47 199 aa13.06□□□□□ -0.32
VPS33A-203ENST00000536212 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.69□□□□□ -0.38
VPS33A-203ENST00000536212 NCBP3Q53F19 620 aaKnown RBP12.65□□□□□ -0.38
VPS33A-203ENST00000536212 POTEHQ6S545 545 aa12.51□□□□□ -0.41
VPS33A-203ENST00000536212 NPM3O75607 178 aaKnown RBP12.46□□□□□ -0.41
VPS33A-203ENST00000536212 U3KPZ7 1027 aaPredicted RBP12.4□□□□□ -0.42
VPS33A-203ENST00000536212 DSG3P32926 999 aa12.38□□□□□ -0.43
VPS33A-203ENST00000536212 SPINK5Q9NQ38 1064 aaPredicted RBP12.33□□□□□ -0.44
VPS33A-203ENST00000536212 CAPN15O75808 1086 aa12.32□□□□□ -0.44
VPS33A-203ENST00000536212 APLP2Q06481 763 aa12.03□□□□□ -0.48
VPS33A-203ENST00000536212 SLC4A2P04920 1241 aa12.02□□□□□ -0.49
VPS33A-203ENST00000536212 ZNF219Q9P2Y4 722 aaPredicted RBP12.02□□□□□ -0.49
VPS33A-203ENST00000536212 TRHP20396 242 aaPredicted RBP12.01□□□□□ -0.49
VPS33A-203ENST00000536212 ABCB7O75027 752 aa11.97□□□□□ -0.49
VPS33A-203ENST00000536212 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.92□□□□□ -0.5
VPS33A-203ENST00000536212 HNRNPUL2Q1KMD3 747 aaKnown RBP11.92□□□□□ -0.5
VPS33A-203ENST00000536212 KCNA4P22459 653 aa11.85□□□□□ -0.51
VPS33A-203ENST00000536212 RBM42Q9BTD8 480 aaKnown RBP11.84□□□□□ -0.51
VPS33A-203ENST00000536212 SAMD1Q6SPF0 538 aaPredicted RBP11.82□□□□□ -0.52
VPS33A-203ENST00000536212 NISCHQ9Y2I1 1504 aa11.81□□□□□ -0.52
VPS33A-203ENST00000536212 CHRDL2Q6WN34 429 aa11.73□□□□□ -0.53
VPS33A-203ENST00000536212 POLA2Q14181 598 aa11.61□□□□□ -0.55
VPS33A-203ENST00000536212 MYCNP04198 464 aaPredicted RBP11.54□□□□□ -0.56
VPS33A-203ENST00000536212 SP7Q8TDD2 431 aaPredicted RBP11.53□□□□□ -0.56
VPS33A-203ENST00000536212 AKT1S1Q96B36 256 aa11.48□□□□□ -0.57
VPS33A-203ENST00000536212 EHMT2Q96KQ7 1210 aa11.48□□□□□ -0.57
VPS33A-203ENST00000536212 ZBTB12Q9Y330 459 aaPredicted RBP11.38□□□□□ -0.59
VPS33A-203ENST00000536212 SLC4A1APQ9BWU0 796 aaKnown RBP11.37□□□□□ -0.59
VPS33A-203ENST00000536212 PIP4P2Q8N4L2 257 aa11.36□□□□□ -0.59
VPS33A-203ENST00000536212 REM2Q8IYK8 340 aaPredicted RBP11.35□□□□□ -0.59
VPS33A-203ENST00000536212 ATF5Q9Y2D1 282 aaPredicted RBP11.28□□□□□ -0.6
VPS33A-203ENST00000536212 HAX1O00165 279 aa11.25□□□□□ -0.61
VPS33A-203ENST00000536212 FXR2P51116 673 aaKnown RBP eCLIP11.25□□□□□ -0.61
VPS33A-203ENST00000536212 OSCARQ8IYS5 282 aa11.25□□□□□ -0.61
VPS33A-203ENST00000536212 PITPNM1O00562 1244 aa11.23□□□□□ -0.61
VPS33A-203ENST00000536212 FOXD4L1Q9NU39 408 aa11.18□□□□□ -0.62
VPS33A-203ENST00000536212 CSRNP3Q8WYN3 585 aa11.15□□□□□ -0.62
VPS33A-203ENST00000536212 EVX2Q03828 476 aa11.08□□□□□ -0.64
VPS33A-203ENST00000536212 SPDYE2BA6NHP3 402 aa10.99□□□□□ -0.65
VPS33A-203ENST00000536212 SPDYE6P0CI01 402 aa10.99□□□□□ -0.65
VPS33A-203ENST00000536212 SPDYE2Q495Y8 402 aa10.99□□□□□ -0.65
VPS33A-203ENST00000536212 PRKAR2AP13861 404 aaKnown RBP10.93□□□□□ -0.66
VPS33A-203ENST00000536212 ATXN8OSP0DMR3 200 aa10.92□□□□□ -0.66
VPS33A-203ENST00000536212 C19orf67A6NJJ6 358 aa10.9□□□□□ -0.66
VPS33A-203ENST00000536212 ZBTB22O15209 634 aa10.9□□□□□ -0.66
VPS33A-203ENST00000536212 FBLN2P98095 1184 aa10.89□□□□□ -0.67
VPS33A-203ENST00000536212 SPDYE1Q8NFV5 336 aaPredicted RBP10.89□□□□□ -0.67
VPS33A-203ENST00000536212 CLEC11AQ9Y240 323 aa10.84□□□□□ -0.67
VPS33A-203ENST00000536212 GABBR2O75899 941 aa10.82□□□□□ -0.68
VPS33A-203ENST00000536212 LHX8Q68G74 356 aa10.8□□□□□ -0.68
VPS33A-203ENST00000536212 SSUH2Q9Y2M2 353 aa10.79□□□□□ -0.68
VPS33A-203ENST00000536212 MKRN4PQ13434 485 aaPredicted RBP10.76□□□□□ -0.69
VPS33A-203ENST00000536212 ZNF692Q9BU19 519 aaPredicted RBP10.75□□□□□ -0.69
VPS33A-203ENST00000536212 CHADLQ6NUI6 762 aa10.68□□□□□ -0.7
VPS33A-203ENST00000536212 PRR29P0C7W0 189 aa10.63□□□□□ -0.71
VPS33A-203ENST00000536212 POTEIP0CG38 1075 aa10.59□□□□□ -0.71
VPS33A-203ENST00000536212 CLCN6P51797 869 aa10.57□□□□□ -0.72
VPS33A-203ENST00000536212 PABPN1Q86U42 306 aaKnown RBP eCLIP10.57□□□□□ -0.72
VPS33A-203ENST00000536212 CD44P16070 742 aaKnown RBP10.55□□□□□ -0.72
VPS33A-203ENST00000536212 FARP1Q9Y4F1 1045 aaPredicted RBP10.52□□□□□ -0.73
VPS33A-203ENST00000536212 DCBLD2Q96PD2 775 aa10.43□□□□□ -0.74
VPS33A-203ENST00000536212 PLSCR2Q9NRY7 297 aa10.42□□□□□ -0.74
VPS33A-203ENST00000536212 ZNF579Q8NAF0 562 aaKnown RBP10.41□□□□□ -0.74
VPS33A-203ENST00000536212 ZRANB1Q9UGI0 708 aa10.33□□□□□ -0.76
VPS33A-203ENST00000536212 OTUD5Q96G74 571 aa10.29□□□□□ -0.76
VPS33A-203ENST00000536212 CREBZFQ9NS37 354 aa10.28□□□□□ -0.76
VPS33A-203ENST00000536212 GALR2O43603 387 aaPredicted RBP10.27□□□□□ -0.77
VPS33A-203ENST00000536212 POTEB2H3BUK9 544 aa10.23□□□□□ -0.77
VPS33A-203ENST00000536212 STAG3Q9UJ98 1225 aa10.23□□□□□ -0.77
VPS33A-203ENST00000536212 POTEMA6NI47 508 aa10.18□□□□□ -0.78
VPS33A-203ENST00000536212 PAK3O75914 559 aaPredicted RBP10.17□□□□□ -0.78
VPS33A-203ENST00000536212 POTEGQ6S5H5 508 aa10.14□□□□□ -0.79
VPS33A-203ENST00000536212 PHF12Q96QT6 1004 aa10.14□□□□□ -0.79
VPS33A-203ENST00000536212 PELP1Q8IZL8 1130 aaKnown RBP10.12□□□□□ -0.79
VPS33A-203ENST00000536212 PCDH10Q9P2E7 1040 aa10.1□□□□□ -0.79
VPS33A-203ENST00000536212 SLC24A1O60721 1099 aa10.08□□□□□ -0.8
VPS33A-203ENST00000536212 NPM1P06748 294 aaKnown RBP eCLIP10.08□□□□□ -0.8
VPS33A-203ENST00000536212 MNX1P50219 401 aaPredicted RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms