RNA–Protein interactions for RNA: ENST00000535493.5

HDAC4-214, Transcript of histone deacetylase 4, humanhuman

TSL 2

Gene HDAC4, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-214ENST00000535493 WDR7Q9Y4E6 1490 aa17.35■□□□□ 0.37
HDAC4-214ENST00000535493 POGKQ9P215 609 aa17.35■□□□□ 0.37
HDAC4-214ENST00000535493 RRP7AQ9Y3A4 280 aaKnown RBP17.35■□□□□ 0.37
HDAC4-214ENST00000535493 CANXP27824 592 aaKnown RBP17.35■□□□□ 0.37
HDAC4-214ENST00000535493 PRDM15P57071 1507 aaPredicted RBP17.35■□□□□ 0.37
HDAC4-214ENST00000535493 ABCA8O94911 1581 aa17.34■□□□□ 0.37
HDAC4-214ENST00000535493 SYNJ2O15056 1496 aa17.34■□□□□ 0.37
HDAC4-214ENST00000535493 SAMD9LQ8IVG5 1584 aa17.34■□□□□ 0.37
HDAC4-214ENST00000535493 SPRYD3Q8NCJ5 442 aa17.34■□□□□ 0.37
HDAC4-214ENST00000535493 BCL2L13Q9BXK5 485 aa17.34■□□□□ 0.37
HDAC4-214ENST00000535493 TNNQ9UQP3 1299 aa17.34■□□□□ 0.37
HDAC4-214ENST00000535493 SYCP2Q9BX26 1530 aa17.34■□□□□ 0.37
HDAC4-214ENST00000535493 USP19O94966 1318 aa17.33■□□□□ 0.37
HDAC4-214ENST00000535493 CLUAP1Q96AJ1 413 aa17.3■□□□□ 0.36
HDAC4-214ENST00000535493 TRMT2AQ8IZ69 625 aaKnown RBP17.29■□□□□ 0.36
HDAC4-214ENST00000535493 ARHGAP5Q13017 1502 aa17.28■□□□□ 0.36
HDAC4-214ENST00000535493 RSPH4AQ5TD94 716 aa17.28■□□□□ 0.36
HDAC4-214ENST00000535493 INSRP06213 1382 aa17.28■□□□□ 0.36
HDAC4-214ENST00000535493 CARD14Q9BXL6 1004 aa17.27■□□□□ 0.36
HDAC4-214ENST00000535493 ERCC6Q03468 1493 aa17.27■□□□□ 0.36
HDAC4-214ENST00000535493 CDC42BPBQ9Y5S2 1711 aa17.27■□□□□ 0.35
HDAC4-214ENST00000535493 NUP160Q12769 1436 aa17.26■□□□□ 0.35
HDAC4-214ENST00000535493 ARHGEF5Q12774 1597 aa17.26■□□□□ 0.35
HDAC4-214ENST00000535493 NKTRP30414 1462 aaKnown RBP17.26■□□□□ 0.35
HDAC4-214ENST00000535493 E9PSI1 815 aa17.26■□□□□ 0.35
HDAC4-214ENST00000535493 CFAP70Q5T0N1 1121 aa17.26■□□□□ 0.35
HDAC4-214ENST00000535493 MYO5CQ9NQX4 1742 aa17.25■□□□□ 0.35
HDAC4-214ENST00000535493 RLBP1P12271 317 aa17.25■□□□□ 0.35
HDAC4-214ENST00000535493 CENPJQ9HC77 1338 aaPredicted RBP17.25■□□□□ 0.35
HDAC4-214ENST00000535493 WWC1Q8IX03 1113 aa17.24■□□□□ 0.35
HDAC4-214ENST00000535493 AFAP1Q8N556 730 aa17.24■□□□□ 0.35
HDAC4-214ENST00000535493 PCDHB15Q9Y5E8 787 aa17.24■□□□□ 0.35
HDAC4-214ENST00000535493 EIF3AQ14152 1382 aaKnown RBP17.22■□□□□ 0.35
HDAC4-214ENST00000535493 GZF1Q9H116 711 aaPredicted RBP17.22■□□□□ 0.35
HDAC4-214ENST00000535493 CDCA8Q53HL2 280 aa17.22■□□□□ 0.35
HDAC4-214ENST00000535493 SENP3Q9H4L4 574 aaPredicted RBP17.22■□□□□ 0.35
HDAC4-214ENST00000535493 ASXL1Q8IXJ9 1541 aa17.21■□□□□ 0.35
HDAC4-214ENST00000535493 TTC37Q6PGP7 1564 aa17.2■□□□□ 0.34
HDAC4-214ENST00000535493 CGNL1Q0VF96 1302 aa17.19■□□□□ 0.34
HDAC4-214ENST00000535493 PIK3C2GO75747 1445 aa17.18■□□□□ 0.34
HDAC4-214ENST00000535493 PDZRN3Q9UPQ7 1066 aa17.18■□□□□ 0.34
HDAC4-214ENST00000535493 PDE3AQ14432 1141 aa17.17■□□□□ 0.34
HDAC4-214ENST00000535493 ADGRF5Q8IZF2 1346 aa17.17■□□□□ 0.34
HDAC4-214ENST00000535493 BECN1Q14457 450 aa17.17■□□□□ 0.34
HDAC4-214ENST00000535493 TBC1D2Q9BYX2 928 aa17.17■□□□□ 0.34
HDAC4-214ENST00000535493 PREX2Q70Z35 1606 aa17.17■□□□□ 0.34
HDAC4-214ENST00000535493 EIF2AK4Q9P2K8 1649 aaKnown RBP17.17■□□□□ 0.34
HDAC4-214ENST00000535493 RARSP54136 660 aaKnown RBP17.16■□□□□ 0.34
HDAC4-214ENST00000535493 TCP11L2Q8N4U5 519 aa17.16■□□□□ 0.34
HDAC4-214ENST00000535493 SCAF11Q99590 1463 aaKnown RBP17.16■□□□□ 0.34
HDAC4-214ENST00000535493 UNC13BO14795 1591 aa17.16■□□□□ 0.34
HDAC4-214ENST00000535493 RRAGDQ9NQL2 400 aaPredicted RBP17.16■□□□□ 0.34
HDAC4-214ENST00000535493 SLC12A5Q9H2X9 1139 aa17.15■□□□□ 0.34
HDAC4-214ENST00000535493 LAMC1P11047 1609 aa17.15■□□□□ 0.34
HDAC4-214ENST00000535493 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.15■□□□□ 0.34
HDAC4-214ENST00000535493 MAPK8IP3Q9UPT6 1336 aa17.14■□□□□ 0.34
HDAC4-214ENST00000535493 CHGAP10645 457 aaKnown RBP17.14■□□□□ 0.33
HDAC4-214ENST00000535493 TRAPPC8Q9Y2L5 1435 aa17.14■□□□□ 0.33
HDAC4-214ENST00000535493 ANTXR1Q9H6X2 564 aa17.14■□□□□ 0.33
HDAC4-214ENST00000535493 IQGAP3Q86VI3 1631 aa17.14■□□□□ 0.33
HDAC4-214ENST00000535493 MORC1Q86VD1 984 aa17.13■□□□□ 0.33
HDAC4-214ENST00000535493 TRAK1Q9UPV9 953 aa17.13■□□□□ 0.33
HDAC4-214ENST00000535493 FAM43AQ8N2R8 423 aa17.12■□□□□ 0.33
HDAC4-214ENST00000535493 PANK2Q9BZ23 570 aa17.12■□□□□ 0.33
HDAC4-214ENST00000535493 UPF2Q9HAU5 1272 aaKnown RBP17.12■□□□□ 0.33
HDAC4-214ENST00000535493 SPAG9O60271 1321 aaKnown RBP17.11■□□□□ 0.33
HDAC4-214ENST00000535493 KIF3BO15066 747 aa17.11■□□□□ 0.33
HDAC4-214ENST00000535493 MFAP1P55081 439 aaKnown RBP17.11■□□□□ 0.33
HDAC4-214ENST00000535493 TBC1D32Q96NH3 1257 aa17.11■□□□□ 0.33
HDAC4-214ENST00000535493 MADDQ8WXG6 1647 aa17.11■□□□□ 0.33
HDAC4-214ENST00000535493 EFCAB2Q5VUJ9 269 aa17.11■□□□□ 0.33
HDAC4-214ENST00000535493 TSR2Q969E8 191 aaKnown RBP17.1■□□□□ 0.33
HDAC4-214ENST00000535493 RNF17Q9BXT8 1623 aaKnown RBP17.1■□□□□ 0.33
HDAC4-214ENST00000535493 ATP10AO60312 1499 aa17.1■□□□□ 0.33
HDAC4-214ENST00000535493 NLRP1Q9C000 1473 aa17.1■□□□□ 0.33
HDAC4-214ENST00000535493 SYNMO15061 1565 aa17.1■□□□□ 0.33
HDAC4-214ENST00000535493 DUOX2Q9NRD8 1548 aa17.09■□□□□ 0.33
HDAC4-214ENST00000535493 MAST1Q9Y2H9 1570 aa17.09■□□□□ 0.33
HDAC4-214ENST00000535493 MTHFSP49914 203 aa17.09■□□□□ 0.33
HDAC4-214ENST00000535493 TMEM132EQ6IEE7 984 aa17.09■□□□□ 0.33
HDAC4-214ENST00000535493 NUTM2DQ5VT03 806 aaPredicted RBP17.08■□□□□ 0.33
HDAC4-214ENST00000535493 PMFBP1Q8TBY8 1022 aa17.08■□□□□ 0.32
HDAC4-214ENST00000535493 XRCC6P12956 609 aaKnown RBP eCLIP17.07■□□□□ 0.32
HDAC4-214ENST00000535493 UGGT1Q9NYU2 1555 aa17.07■□□□□ 0.32
HDAC4-214ENST00000535493 RUNDC1Q96C34 613 aa17.07■□□□□ 0.32
HDAC4-214ENST00000535493 ERVK-7P63135 1459 aa17.07■□□□□ 0.32
HDAC4-214ENST00000535493 ABCC2Q92887 1545 aa17.07■□□□□ 0.32
HDAC4-214ENST00000535493 IQGAP1P46940 1657 aa17.07■□□□□ 0.32
HDAC4-214ENST00000535493 MYOM1P52179 1685 aa17.07■□□□□ 0.32
HDAC4-214ENST00000535493 CLASP1Q7Z460 1538 aa17.06■□□□□ 0.32
HDAC4-214ENST00000535493 NPC1L1Q9UHC9 1359 aa17.06■□□□□ 0.32
HDAC4-214ENST00000535493 NSD3Q9BZ95 1437 aa17.05■□□□□ 0.32
HDAC4-214ENST00000535493 U2AF1L5P0DN76 240 aaPredicted RBP17.05■□□□□ 0.32
HDAC4-214ENST00000535493 U2AF1Q01081 240 aaKnown RBP eCLIP17.05■□□□□ 0.32
HDAC4-214ENST00000535493 FTSJ3Q8IY81 847 aaKnown RBP17.05■□□□□ 0.32
HDAC4-214ENST00000535493 SAFB2Q14151 953 aaKnown RBP eCLIP17.05■□□□□ 0.32
HDAC4-214ENST00000535493 RWDD1Q9H446 243 aaPredicted RBP17.04■□□□□ 0.32
HDAC4-214ENST00000535493 ERCC6L2Q5T890 1561 aa17.03■□□□□ 0.32
HDAC4-214ENST00000535493 MCM4P33991 863 aa17.03■□□□□ 0.32
HDAC4-214ENST00000535493 C22orf23Q9BZE7 217 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms