RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 LTBP4Q8N2S1 1624 aa29.39■■■□□ 2.3
CPSF1-209ENST00000532725 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.39■■■□□ 2.3
CPSF1-209ENST00000532725 IQGAP1P46940 1657 aa29.39■■■□□ 2.3
CPSF1-209ENST00000532725 TRIM26Q12899 539 aaPredicted RBP29.36■■■□□ 2.29
CPSF1-209ENST00000532725 NUTM2DQ5VT03 806 aaPredicted RBP29.36■■■□□ 2.29
CPSF1-209ENST00000532725 PPP1R15AO75807 674 aaPredicted RBP29.34■■■□□ 2.29
CPSF1-209ENST00000532725 ZNF326Q5BKZ1 582 aaKnown RBP29.34■■■□□ 2.29
CPSF1-209ENST00000532725 PLEKHG1Q9ULL1 1385 aa29.32■■■□□ 2.28
CPSF1-209ENST00000532725 SLC26A8Q96RN1 970 aa29.31■■■□□ 2.28
CPSF1-209ENST00000532725 CCDC144AA2RUR9 1427 aa29.29■■■□□ 2.28
CPSF1-209ENST00000532725 BCANQ96GW7 911 aa29.29■■■□□ 2.28
CPSF1-209ENST00000532725 SENP3Q9H4L4 574 aaPredicted RBP29.28■■■□□ 2.28
CPSF1-209ENST00000532725 KIF1BO60333 1816 aa29.27■■■□□ 2.28
CPSF1-209ENST00000532725 ANKRD30BQ9BXX2 1392 aa29.25■■■□□ 2.27
CPSF1-209ENST00000532725 RPGRIP1LQ68CZ1 1315 aa29.24■■■□□ 2.27
CPSF1-209ENST00000532725 TBX22Q9Y458 520 aa29.24■■■□□ 2.27
CPSF1-209ENST00000532725 FBXO41Q8TF61 875 aa29.22■■■□□ 2.27
CPSF1-209ENST00000532725 SPATA31E1Q6ZUB1 1445 aa29.2■■■□□ 2.27
CPSF1-209ENST00000532725 KCNA6P17658 529 aa29.2■■■□□ 2.26
CPSF1-209ENST00000532725 RGL3Q3MIN7 710 aa29.2■■■□□ 2.26
CPSF1-209ENST00000532725 ILDR1Q86SU0 546 aaPredicted RBP29.2■■■□□ 2.26
CPSF1-209ENST00000532725 CPS1P31327 1500 aa29.2■■■□□ 2.26
CPSF1-209ENST00000532725 NEXMIFQ5QGS0 1516 aa29.2■■■□□ 2.26
CPSF1-209ENST00000532725 ADAMTS13Q76LX8 1427 aa29.2■■■□□ 2.26
CPSF1-209ENST00000532725 VGFO15240 615 aaPredicted RBP29.19■■■□□ 2.26
CPSF1-209ENST00000532725 IQSEC2Q5JU85 1478 aa29.17■■■□□ 2.26
CPSF1-209ENST00000532725 STRCP1A6NGW2 1772 aa29.16■■■□□ 2.26
CPSF1-209ENST00000532725 LRRC7Q96NW7 1537 aa29.1■■■□□ 2.25
CPSF1-209ENST00000532725 SETBP1Q9Y6X0 1596 aa29.09■■■□□ 2.25
CPSF1-209ENST00000532725 PIK3R4Q99570 1358 aa29.09■■■□□ 2.25
CPSF1-209ENST00000532725 DIP2AQ14689 1571 aa29.07■■■□□ 2.24
CPSF1-209ENST00000532725 ADGRF5Q8IZF2 1346 aa29.07■■■□□ 2.24
CPSF1-209ENST00000532725 NRXN3Q9Y4C0 1643 aa29.07■■■□□ 2.24
CPSF1-209ENST00000532725 PPLO60437 1756 aa29.06■■■□□ 2.24
CPSF1-209ENST00000532725 PROSER2Q86WR7 435 aaPredicted RBP29.05■■■□□ 2.24
CPSF1-209ENST00000532725 CHD2O14647 1828 aaKnown RBP29.04■■■□□ 2.24
CPSF1-209ENST00000532725 METP08581 1390 aa29.03■■■□□ 2.24
CPSF1-209ENST00000532725 AMOTL2Q9Y2J4 779 aa29.03■■■□□ 2.24
CPSF1-209ENST00000532725 PTPRUQ92729 1446 aa29.02■■■□□ 2.24
CPSF1-209ENST00000532725 NWD1Q149M9 1564 aa29.01■■■□□ 2.24
CPSF1-209ENST00000532725 UBAP1LF5GYI3 381 aa29.01■■■□□ 2.23
CPSF1-209ENST00000532725 RBM33Q96EV2 1170 aaKnown RBP29■■■□□ 2.23
CPSF1-209ENST00000532725 TMEM94Q12767 1356 aa29■■■□□ 2.23
CPSF1-209ENST00000532725 NKTRP30414 1462 aaKnown RBP28.98■■■□□ 2.23
CPSF1-209ENST00000532725 DHX57Q6P158 1386 aaKnown RBP28.97■■■□□ 2.23
CPSF1-209ENST00000532725 ALKQ9UM73 1620 aa28.96■■■□□ 2.23
CPSF1-209ENST00000532725 TOM1O60784 492 aa28.96■■■□□ 2.23
CPSF1-209ENST00000532725 IFT172Q9UG01 1749 aa28.96■■■□□ 2.23
CPSF1-209ENST00000532725 DCAF11Q8TEB1 546 aa28.93■■■□□ 2.22
CPSF1-209ENST00000532725 XIRP1Q702N8 1843 aaKnown RBP28.92■■■□□ 2.22
CPSF1-209ENST00000532725 STAC3Q96MF2 364 aa28.92■■■□□ 2.22
CPSF1-209ENST00000532725 PCGF6Q9BYE7 350 aa28.91■■■□□ 2.22
CPSF1-209ENST00000532725 C14orf93Q9H972 538 aaKnown RBP28.91■■■□□ 2.22
CPSF1-209ENST00000532725 PIK3C2GO75747 1445 aa28.91■■■□□ 2.22
CPSF1-209ENST00000532725 NRXN1Q9ULB1 1477 aa28.91■■■□□ 2.22
CPSF1-209ENST00000532725 SIN3AQ96ST3 1273 aa28.9■■■□□ 2.22
CPSF1-209ENST00000532725 KDM2AQ9Y2K7 1162 aa28.9■■■□□ 2.22
CPSF1-209ENST00000532725 MYOM2P54296 1465 aa28.9■■■□□ 2.22
CPSF1-209ENST00000532725 NCOA3Q9Y6Q9 1424 aa28.89■■■□□ 2.22
CPSF1-209ENST00000532725 SETD1AO15047 1707 aaKnown RBP28.89■■■□□ 2.21
CPSF1-209ENST00000532725 CFAP70Q5T0N1 1121 aa28.86■■■□□ 2.21
CPSF1-209ENST00000532725 XRN1Q8IZH2 1706 aaKnown RBP28.86■■■□□ 2.21
CPSF1-209ENST00000532725 TMEM132EQ6IEE7 984 aa28.85■■■□□ 2.21
CPSF1-209ENST00000532725 PIP4K2BP78356 416 aa28.84■■■□□ 2.21
CPSF1-209ENST00000532725 C19orf44Q9H6X5 657 aa28.82■■■□□ 2.2
CPSF1-209ENST00000532725 MSH6P52701 1360 aa28.82■■■□□ 2.2
CPSF1-209ENST00000532725 NEUROD1Q13562 356 aa28.81■■■□□ 2.2
CPSF1-209ENST00000532725 C14orf37Q86TY3 774 aa28.8■■■□□ 2.2
CPSF1-209ENST00000532725 ROBO2Q9HCK4 1378 aa28.79■■■□□ 2.2
CPSF1-209ENST00000532725 PRAG1Q86YV5 1406 aa28.78■■■□□ 2.2
CPSF1-209ENST00000532725 SCAF1Q9H7N4 1312 aaKnown RBP28.78■■■□□ 2.2
CPSF1-209ENST00000532725 STK26Q9P289 416 aa28.78■■■□□ 2.2
CPSF1-209ENST00000532725 LRPPRCP42704 1394 aaKnown RBP28.77■■■□□ 2.2
CPSF1-209ENST00000532725 L3MBTL2Q969R5 705 aa28.77■■■□□ 2.2
CPSF1-209ENST00000532725 ABCC11Q96J66 1382 aa28.76■■■□□ 2.2
CPSF1-209ENST00000532725 PTCH1Q13635 1447 aa28.76■■■□□ 2.19
CPSF1-209ENST00000532725 ASXL1Q8IXJ9 1541 aa28.75■■■□□ 2.19
CPSF1-209ENST00000532725 SLAIN2Q9P270 581 aa28.74■■■□□ 2.19
CPSF1-209ENST00000532725 YTHDC2Q9H6S0 1430 aaKnown RBP28.73■■■□□ 2.19
CPSF1-209ENST00000532725 CADPS2Q86UW7 1296 aa28.72■■■□□ 2.19
CPSF1-209ENST00000532725 SIRT1Q96EB6 747 aa28.72■■■□□ 2.19
CPSF1-209ENST00000532725 TECPR2O15040 1411 aa28.71■■■□□ 2.19
CPSF1-209ENST00000532725 ATF3P18847 181 aa28.71■■■□□ 2.19
CPSF1-209ENST00000532725 WAPLQ7Z5K2 1190 aa28.7■■■□□ 2.18
CPSF1-209ENST00000532725 FAM135BQ49AJ0 1406 aa28.69■■■□□ 2.18
CPSF1-209ENST00000532725 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.69■■■□□ 2.18
CPSF1-209ENST00000532725 LAMC1P11047 1609 aa28.68■■■□□ 2.18
CPSF1-209ENST00000532725 HSPA1LP34931 641 aa28.67■■■□□ 2.18
CPSF1-209ENST00000532725 ADGRL3Q9HAR2 1447 aa28.67■■■□□ 2.18
CPSF1-209ENST00000532725 ADGRB1O14514 1584 aa28.66■■■□□ 2.18
CPSF1-209ENST00000532725 DCCP43146 1447 aa28.65■■■□□ 2.18
CPSF1-209ENST00000532725 PLEKHH1Q9ULM0 1364 aa28.63■■■□□ 2.17
CPSF1-209ENST00000532725 NBPF1Q3BBV0 1214 aa28.6■■■□□ 2.17
CPSF1-209ENST00000532725 TRAK1Q9UPV9 953 aa28.6■■■□□ 2.17
CPSF1-209ENST00000532725 KNDC1Q76NI1 1749 aa28.6■■■□□ 2.17
CPSF1-209ENST00000532725 PRAM1Q96QH2 718 aa28.58■■■□□ 2.17
CPSF1-209ENST00000532725 NALCNQ8IZF0 1738 aa28.57■■■□□ 2.16
CPSF1-209ENST00000532725 MST1RQ04912 1400 aa28.56■■■□□ 2.16
CPSF1-209ENST00000532725 DLC1Q96QB1 1528 aa28.55■■■□□ 2.16
CPSF1-209ENST00000532725 POGKQ9P215 609 aa28.54■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms