RNA–Protein interactions for RNA: ENST00000528563.5

HIF3A-211, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2

Gene HIF3A, Length 1,486 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-211ENST00000528563 FOXD1Q16676 465 aa25.05■■□□□ 1.6
HIF3A-211ENST00000528563 TRPM2O94759 1503 aa25.05■■□□□ 1.6
HIF3A-211ENST00000528563 HRCP23327 699 aa25.03■■□□□ 1.6
HIF3A-211ENST00000528563 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.03■■□□□ 1.6
HIF3A-211ENST00000528563 CLTCL1P53675 1640 aa25■■□□□ 1.59
HIF3A-211ENST00000528563 SLC26A8Q96RN1 970 aa25■■□□□ 1.59
HIF3A-211ENST00000528563 IQSEC2Q5JU85 1478 aa24.99■■□□□ 1.59
HIF3A-211ENST00000528563 PPP1R15AO75807 674 aaPredicted RBP24.99■■□□□ 1.59
HIF3A-211ENST00000528563 PLEKHG1Q9ULL1 1385 aa24.98■■□□□ 1.59
HIF3A-211ENST00000528563 NUTM2DQ5VT03 806 aaPredicted RBP24.98■■□□□ 1.59
HIF3A-211ENST00000528563 CPS1P31327 1500 aa24.98■■□□□ 1.59
HIF3A-211ENST00000528563 ZNF326Q5BKZ1 582 aaKnown RBP24.96■■□□□ 1.59
HIF3A-211ENST00000528563 BCANQ96GW7 911 aa24.96■■□□□ 1.59
HIF3A-211ENST00000528563 SENP3Q9H4L4 574 aaPredicted RBP24.94■■□□□ 1.58
HIF3A-211ENST00000528563 STRCP1A6NGW2 1772 aa24.93■■□□□ 1.58
HIF3A-211ENST00000528563 TBX22Q9Y458 520 aa24.93■■□□□ 1.58
HIF3A-211ENST00000528563 KCNA6P17658 529 aa24.91■■□□□ 1.58
HIF3A-211ENST00000528563 KIF1BO60333 1816 aa24.91■■□□□ 1.58
HIF3A-211ENST00000528563 CCDC144AA2RUR9 1427 aa24.88■■□□□ 1.57
HIF3A-211ENST00000528563 ADAMTS13Q76LX8 1427 aa24.88■■□□□ 1.57
HIF3A-211ENST00000528563 LRRC7Q96NW7 1537 aa24.88■■□□□ 1.57
HIF3A-211ENST00000528563 RPGRIP1LQ68CZ1 1315 aa24.87■■□□□ 1.57
HIF3A-211ENST00000528563 NEXMIFQ5QGS0 1516 aa24.85■■□□□ 1.57
HIF3A-211ENST00000528563 VGFO15240 615 aaPredicted RBP24.84■■□□□ 1.57
HIF3A-211ENST00000528563 UBAP1LF5GYI3 381 aa24.83■■□□□ 1.57
HIF3A-211ENST00000528563 SPATA31E1Q6ZUB1 1445 aa24.83■■□□□ 1.56
HIF3A-211ENST00000528563 ANKRD30BQ9BXX2 1392 aa24.81■■□□□ 1.56
HIF3A-211ENST00000528563 RGL3Q3MIN7 710 aa24.8■■□□□ 1.56
HIF3A-211ENST00000528563 PROSER2Q86WR7 435 aaPredicted RBP24.8■■□□□ 1.56
HIF3A-211ENST00000528563 PIK3R4Q99570 1358 aa24.8■■□□□ 1.56
HIF3A-211ENST00000528563 SETBP1Q9Y6X0 1596 aa24.79■■□□□ 1.56
HIF3A-211ENST00000528563 DIP2AQ14689 1571 aa24.79■■□□□ 1.56
HIF3A-211ENST00000528563 CHD2O14647 1828 aaKnown RBP24.78■■□□□ 1.56
HIF3A-211ENST00000528563 NRXN3Q9Y4C0 1643 aa24.78■■□□□ 1.56
HIF3A-211ENST00000528563 TOM1O60784 492 aa24.77■■□□□ 1.56
HIF3A-211ENST00000528563 NWD1Q149M9 1564 aa24.77■■□□□ 1.56
HIF3A-211ENST00000528563 TMEM94Q12767 1356 aa24.76■■□□□ 1.55
HIF3A-211ENST00000528563 NKTRP30414 1462 aaKnown RBP24.75■■□□□ 1.55
HIF3A-211ENST00000528563 AMOTL2Q9Y2J4 779 aa24.74■■□□□ 1.55
HIF3A-211ENST00000528563 PPLO60437 1756 aa24.73■■□□□ 1.55
HIF3A-211ENST00000528563 TRIM26Q12899 539 aaPredicted RBP24.73■■□□□ 1.55
HIF3A-211ENST00000528563 RBM33Q96EV2 1170 aaKnown RBP24.73■■□□□ 1.55
HIF3A-211ENST00000528563 XIRP1Q702N8 1843 aaKnown RBP24.73■■□□□ 1.55
HIF3A-211ENST00000528563 METP08581 1390 aa24.73■■□□□ 1.55
HIF3A-211ENST00000528563 PTPRUQ92729 1446 aa24.73■■□□□ 1.55
HIF3A-211ENST00000528563 ADGRF5Q8IZF2 1346 aa24.7■■□□□ 1.55
HIF3A-211ENST00000528563 ALKQ9UM73 1620 aa24.69■■□□□ 1.54
HIF3A-211ENST00000528563 PIP4K2BP78356 416 aa24.67■■□□□ 1.54
HIF3A-211ENST00000528563 NCOA3Q9Y6Q9 1424 aa24.66■■□□□ 1.54
HIF3A-211ENST00000528563 IFT172Q9UG01 1749 aa24.64■■□□□ 1.54
HIF3A-211ENST00000528563 SCAF1Q9H7N4 1312 aaKnown RBP24.63■■□□□ 1.53
HIF3A-211ENST00000528563 XRN1Q8IZH2 1706 aaKnown RBP24.62■■□□□ 1.53
HIF3A-211ENST00000528563 SETD1AO15047 1707 aaKnown RBP24.61■■□□□ 1.53
HIF3A-211ENST00000528563 MSH6P52701 1360 aa24.6■■□□□ 1.53
HIF3A-211ENST00000528563 C19orf44Q9H6X5 657 aa24.59■■□□□ 1.53
HIF3A-211ENST00000528563 PIK3C2GO75747 1445 aa24.59■■□□□ 1.53
HIF3A-211ENST00000528563 NRXN1Q9ULB1 1477 aa24.58■■□□□ 1.52
HIF3A-211ENST00000528563 C14orf37Q86TY3 774 aa24.57■■□□□ 1.52
HIF3A-211ENST00000528563 C14orf93Q9H972 538 aaKnown RBP24.57■■□□□ 1.52
HIF3A-211ENST00000528563 MYOM2P54296 1465 aa24.56■■□□□ 1.52
HIF3A-211ENST00000528563 STAC3Q96MF2 364 aa24.56■■□□□ 1.52
HIF3A-211ENST00000528563 HSPA1LP34931 641 aa24.55■■□□□ 1.52
HIF3A-211ENST00000528563 DCAF11Q8TEB1 546 aa24.55■■□□□ 1.52
HIF3A-211ENST00000528563 SLAIN2Q9P270 581 aa24.55■■□□□ 1.52
HIF3A-211ENST00000528563 DHX57Q6P158 1386 aaKnown RBP24.54■■□□□ 1.52
HIF3A-211ENST00000528563 FAM135BQ49AJ0 1406 aa24.53■■□□□ 1.52
HIF3A-211ENST00000528563 PRAG1Q86YV5 1406 aa24.53■■□□□ 1.52
HIF3A-211ENST00000528563 TMEM132EQ6IEE7 984 aa24.53■■□□□ 1.52
HIF3A-211ENST00000528563 KDM2AQ9Y2K7 1162 aa24.53■■□□□ 1.52
HIF3A-211ENST00000528563 ROBO2Q9HCK4 1378 aa24.52■■□□□ 1.52
HIF3A-211ENST00000528563 CFAP70Q5T0N1 1121 aa24.51■■□□□ 1.51
HIF3A-211ENST00000528563 CADPS2Q86UW7 1296 aa24.51■■□□□ 1.51
HIF3A-211ENST00000528563 PTCH1Q13635 1447 aa24.5■■□□□ 1.51
HIF3A-211ENST00000528563 ATF3P18847 181 aa24.5■■□□□ 1.51
HIF3A-211ENST00000528563 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.49■■□□□ 1.51
HIF3A-211ENST00000528563 LRPPRCP42704 1394 aaKnown RBP24.49■■□□□ 1.51
HIF3A-211ENST00000528563 ABCC11Q96J66 1382 aa24.49■■□□□ 1.51
HIF3A-211ENST00000528563 STK26Q9P289 416 aa24.48■■□□□ 1.51
HIF3A-211ENST00000528563 ASXL1Q8IXJ9 1541 aa24.46■■□□□ 1.51
HIF3A-211ENST00000528563 DCCP43146 1447 aa24.46■■□□□ 1.51
HIF3A-211ENST00000528563 ADGRL3Q9HAR2 1447 aa24.46■■□□□ 1.51
HIF3A-211ENST00000528563 SIN3AQ96ST3 1273 aa24.45■■□□□ 1.51
HIF3A-211ENST00000528563 TECPR2O15040 1411 aa24.45■■□□□ 1.5
HIF3A-211ENST00000528563 YTHDC2Q9H6S0 1430 aaKnown RBP24.44■■□□□ 1.5
HIF3A-211ENST00000528563 SIRT1Q96EB6 747 aa24.44■■□□□ 1.5
HIF3A-211ENST00000528563 WAPLQ7Z5K2 1190 aa24.42■■□□□ 1.5
HIF3A-211ENST00000528563 LAMC1P11047 1609 aa24.41■■□□□ 1.5
HIF3A-211ENST00000528563 ROBO1Q9Y6N7 1651 aa24.4■■□□□ 1.5
HIF3A-211ENST00000528563 NALCNQ8IZF0 1738 aa24.38■■□□□ 1.49
HIF3A-211ENST00000528563 NEUROD1Q13562 356 aa24.38■■□□□ 1.49
HIF3A-211ENST00000528563 L3MBTL2Q969R5 705 aa24.38■■□□□ 1.49
HIF3A-211ENST00000528563 MST1RQ04912 1400 aa24.37■■□□□ 1.49
HIF3A-211ENST00000528563 ADGRB1O14514 1584 aa24.37■■□□□ 1.49
HIF3A-211ENST00000528563 PLEKHH1Q9ULM0 1364 aa24.36■■□□□ 1.49
HIF3A-211ENST00000528563 BRINP3Q76B58 766 aa24.35■■□□□ 1.49
HIF3A-211ENST00000528563 KNDC1Q76NI1 1749 aa24.35■■□□□ 1.49
HIF3A-211ENST00000528563 PCGF6Q9BYE7 350 aa24.32■■□□□ 1.48
HIF3A-211ENST00000528563 PRAM1Q96QH2 718 aa24.31■■□□□ 1.48
HIF3A-211ENST00000528563 TRAK1Q9UPV9 953 aa24.3■■□□□ 1.48
HIF3A-211ENST00000528563 C1orf167Q5SNV9 1468 aa24.29■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms