RNA–Protein interactions for RNA: ENST00000524927.1

NEDD8-203, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2 BASIC

Gene NEDD8, Length 653 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-203ENST00000524927 PLA2G2EQ9NZK7 142 aa13.01□□□□□ -0.33
NEDD8-203ENST00000524927 CUL7Q14999 1698 aa13□□□□□ -0.33
NEDD8-203ENST00000524927 MED1Q15648 1581 aaPredicted RBP13□□□□□ -0.33
NEDD8-203ENST00000524927 YEATS2Q9ULM3 1422 aa13□□□□□ -0.33
NEDD8-203ENST00000524927 HCSTQ9UBK5 93 aa13□□□□□ -0.33
NEDD8-203ENST00000524927 PPP4R3BQ5MIZ7 849 aa12.99□□□□□ -0.33
NEDD8-203ENST00000524927 NCKAP5LQ9HCH0 1330 aa12.98□□□□□ -0.33
NEDD8-203ENST00000524927 KCNK17Q96T54 332 aa12.98□□□□□ -0.33
NEDD8-203ENST00000524927 TBC1D12O60347 775 aa12.97□□□□□ -0.33
NEDD8-203ENST00000524927 P3H3Q8IVL6 736 aa12.97□□□□□ -0.33
NEDD8-203ENST00000524927 ARAP3Q8WWN8 1544 aa12.95□□□□□ -0.34
NEDD8-203ENST00000524927 KDM5BQ9UGL1 1544 aa12.95□□□□□ -0.34
NEDD8-203ENST00000524927 KCTD12Q96CX2 325 aaKnown RBP12.95□□□□□ -0.34
NEDD8-203ENST00000524927 RIMS1Q86UR5 1692 aaKnown RBP12.95□□□□□ -0.34
NEDD8-203ENST00000524927 CD109Q6YHK3 1445 aa12.95□□□□□ -0.34
NEDD8-203ENST00000524927 TNIKQ9UKE5 1360 aa12.94□□□□□ -0.34
NEDD8-203ENST00000524927 WRNQ14191 1432 aaPredicted RBP eCLIP12.94□□□□□ -0.34
NEDD8-203ENST00000524927 ARID4BQ4LE39 1312 aaPredicted RBP12.93□□□□□ -0.34
NEDD8-203ENST00000524927 LTBP4Q8N2S1 1624 aa12.93□□□□□ -0.34
NEDD8-203ENST00000524927 PPP1R15BQ5SWA1 713 aa12.93□□□□□ -0.34
NEDD8-203ENST00000524927 VPS9D1Q9Y2B5 631 aa12.93□□□□□ -0.34
NEDD8-203ENST00000524927 UACAQ9BZF9 1416 aa12.93□□□□□ -0.34
NEDD8-203ENST00000524927 ZNF454Q8N9F8 522 aa12.92□□□□□ -0.34
NEDD8-203ENST00000524927 PTPRTO14522 1441 aa12.91□□□□□ -0.34
NEDD8-203ENST00000524927 CFAP43Q8NDM7 1665 aa12.9□□□□□ -0.34
NEDD8-203ENST00000524927 STRCQ7RTU9 1775 aa12.9□□□□□ -0.34
NEDD8-203ENST00000524927 WDR7Q9Y4E6 1490 aa12.9□□□□□ -0.34
NEDD8-203ENST00000524927 TTBK1Q5TCY1 1321 aaPredicted RBP12.89□□□□□ -0.35
NEDD8-203ENST00000524927 FOSBP53539 338 aa12.88□□□□□ -0.35
NEDD8-203ENST00000524927 CARMIL2Q6F5E8 1435 aa12.88□□□□□ -0.35
NEDD8-203ENST00000524927 UBAP1LF5GYI3 381 aa12.87□□□□□ -0.35
NEDD8-203ENST00000524927 KCNV2Q8TDN2 545 aa12.86□□□□□ -0.35
NEDD8-203ENST00000524927 BCL2L12Q9HB09 334 aa12.86□□□□□ -0.35
NEDD8-203ENST00000524927 ANO8Q9HCE9 1232 aaPredicted RBP12.86□□□□□ -0.35
NEDD8-203ENST00000524927 ZCCHC11Q5TAX3 1644 aaKnown RBP12.86□□□□□ -0.35
NEDD8-203ENST00000524927 PHLDB1Q86UU1 1377 aa12.85□□□□□ -0.35
NEDD8-203ENST00000524927 BHMG1C9JSJ3 638 aaPredicted RBP12.84□□□□□ -0.35
NEDD8-203ENST00000524927 PTPN5P54829 565 aa12.83□□□□□ -0.36
NEDD8-203ENST00000524927 PREX1Q8TCU6 1659 aa12.83□□□□□ -0.36
NEDD8-203ENST00000524927 PDE4AP27815 886 aa12.82□□□□□ -0.36
NEDD8-203ENST00000524927 ADAM33Q9BZ11 813 aa12.82□□□□□ -0.36
NEDD8-203ENST00000524927 EVI5O60447 810 aa12.81□□□□□ -0.36
NEDD8-203ENST00000524927 HSPA1LP34931 641 aa12.81□□□□□ -0.36
NEDD8-203ENST00000524927 LARP6Q9BRS8 491 aaKnown RBP12.81□□□□□ -0.36
NEDD8-203ENST00000524927 ZBED2Q9BTP6 218 aa12.81□□□□□ -0.36
NEDD8-203ENST00000524927 POGZQ7Z3K3 1410 aa12.8□□□□□ -0.36
NEDD8-203ENST00000524927 E2F4Q16254 413 aa12.8□□□□□ -0.36
NEDD8-203ENST00000524927 SLC4A5Q9BY07 1137 aa12.8□□□□□ -0.36
NEDD8-203ENST00000524927 STAC3Q96MF2 364 aa12.79□□□□□ -0.36
NEDD8-203ENST00000524927 EMILIN3Q9NT22 766 aa12.79□□□□□ -0.36
NEDD8-203ENST00000524927 RAPGEF3O95398 923 aa12.78□□□□□ -0.36
NEDD8-203ENST00000524927 TTC37Q6PGP7 1564 aa12.77□□□□□ -0.36
NEDD8-203ENST00000524927 PTPREP23469 700 aa12.76□□□□□ -0.37
NEDD8-203ENST00000524927 MFSD10Q14728 455 aa12.75□□□□□ -0.37
NEDD8-203ENST00000524927 KCNH8Q96L42 1107 aa12.75□□□□□ -0.37
NEDD8-203ENST00000524927 FANCAO15360 1455 aa12.74□□□□□ -0.37
NEDD8-203ENST00000524927 THSD4Q6ZMP0 1018 aa12.74□□□□□ -0.37
NEDD8-203ENST00000524927 ARHGEF1Q92888 912 aaKnown RBP12.74□□□□□ -0.37
NEDD8-203ENST00000524927 ZDHHC16Q969W1 377 aa12.74□□□□□ -0.37
NEDD8-203ENST00000524927 DDX27Q96GQ7 796 aaKnown RBP12.74□□□□□ -0.37
NEDD8-203ENST00000524927 ARHGEF40Q8TER5 1519 aa12.73□□□□□ -0.37
NEDD8-203ENST00000524927 UHRF1BP1Q6BDS2 1440 aa12.73□□□□□ -0.37
NEDD8-203ENST00000524927 PCDHGA10Q9Y5H3 936 aa12.71□□□□□ -0.37
NEDD8-203ENST00000524927 FRMPD1Q5SYB0 1578 aa12.7□□□□□ -0.38
NEDD8-203ENST00000524927 MAP3K9P80192 1104 aa12.7□□□□□ -0.38
NEDD8-203ENST00000524927 FER1L4A9Z1Z3 1794 aa12.69□□□□□ -0.38
NEDD8-203ENST00000524927 TULP1O00294 542 aaPredicted RBP12.69□□□□□ -0.38
NEDD8-203ENST00000524927 COL9A1P20849 921 aa12.69□□□□□ -0.38
NEDD8-203ENST00000524927 NEO1Q92859 1461 aa12.69□□□□□ -0.38
NEDD8-203ENST00000524927 PROX2Q3B8N5 592 aa12.68□□□□□ -0.38
NEDD8-203ENST00000524927 WNT2BQ93097 391 aa12.68□□□□□ -0.38
NEDD8-203ENST00000524927 BIVM-ERCC5R4GMW8 1640 aa12.68□□□□□ -0.38
NEDD8-203ENST00000524927 MRPL50Q8N5N7 158 aaKnown RBP12.67□□□□□ -0.38
NEDD8-203ENST00000524927 RGS17Q9UGC6 210 aaPredicted RBP12.67□□□□□ -0.38
NEDD8-203ENST00000524927 SETD1BQ9UPS6 1966 aaKnown RBP12.67□□□□□ -0.38
NEDD8-203ENST00000524927 AKNAQ7Z591 1439 aa12.66□□□□□ -0.38
NEDD8-203ENST00000524927 DISP1Q96F81 1524 aa12.66□□□□□ -0.38
NEDD8-203ENST00000524927 SRCAPQ6ZRS2 3230 aa12.65□□□□□ -0.38
NEDD8-203ENST00000524927 NCOA1Q15788 1441 aa12.64□□□□□ -0.39
NEDD8-203ENST00000524927 TOM1O60784 492 aa12.64□□□□□ -0.39
NEDD8-203ENST00000524927 LMOD2Q6P5Q4 547 aa12.64□□□□□ -0.39
NEDD8-203ENST00000524927 ZNF335Q9H4Z2 1342 aaPredicted RBP12.63□□□□□ -0.39
NEDD8-203ENST00000524927 PIP4K2BP78356 416 aa12.63□□□□□ -0.39
NEDD8-203ENST00000524927 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.63□□□□□ -0.39
NEDD8-203ENST00000524927 GOLGA8CPA6NN73 597 aa12.62□□□□□ -0.39
NEDD8-203ENST00000524927 CEBPAP49715 358 aaPredicted RBP12.62□□□□□ -0.39
NEDD8-203ENST00000524927 MLECQ14165 292 aa12.62□□□□□ -0.39
NEDD8-203ENST00000524927 IFFO2Q5TF58 517 aa12.62□□□□□ -0.39
NEDD8-203ENST00000524927 ARHGEF12Q9NZN5 1544 aa12.62□□□□□ -0.39
NEDD8-203ENST00000524927 IQGAP2Q13576 1575 aa12.61□□□□□ -0.39
NEDD8-203ENST00000524927 SEMA3EO15041 775 aa12.61□□□□□ -0.39
NEDD8-203ENST00000524927 RGS20O76081 388 aa12.61□□□□□ -0.39
NEDD8-203ENST00000524927 PPP1R3GB7ZBB8 358 aa12.59□□□□□ -0.39
NEDD8-203ENST00000524927 ABCA9Q8IUA7 1624 aa12.59□□□□□ -0.39
NEDD8-203ENST00000524927 IGF1RP08069 1367 aa12.58□□□□□ -0.4
NEDD8-203ENST00000524927 SIGLEC1Q9BZZ2 1709 aa12.58□□□□□ -0.4
NEDD8-203ENST00000524927 FHOD3Q2V2M9 1422 aa12.57□□□□□ -0.4
NEDD8-203ENST00000524927 CAMK2BQ13554 666 aa12.57□□□□□ -0.4
NEDD8-203ENST00000524927 RABGEF1Q9UJ41 708 aa12.57□□□□□ -0.4
NEDD8-203ENST00000524927 DENND4BO75064 1496 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms