RNA–Protein interactions for RNA: ENST00000519004.5

PABPC1-208, Transcript of poly(A) binding protein cytoplasmic 1, humanhuman

TSL 2 BASIC

Gene PABPC1, Length 2,401 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC1-208ENST00000519004 DAPK1P53355 1430 aa17.08■□□□□ 0.32
PABPC1-208ENST00000519004 KIAA1107Q9UPP5 1409 aa17.08■□□□□ 0.32
PABPC1-208ENST00000519004 XPCQ01831 940 aaPredicted RBP17.08■□□□□ 0.32
PABPC1-208ENST00000519004 TRMT2AQ8IZ69 625 aaKnown RBP17.08■□□□□ 0.32
PABPC1-208ENST00000519004 CHMP4BQ9H444 224 aaKnown RBP17.08■□□□□ 0.32
PABPC1-208ENST00000519004 NOL7Q9UMY1 257 aaKnown RBP17.08■□□□□ 0.32
PABPC1-208ENST00000519004 CGNL1Q0VF96 1302 aa17.08■□□□□ 0.32
PABPC1-208ENST00000519004 CLASP1Q7Z460 1538 aa17.07■□□□□ 0.32
PABPC1-208ENST00000519004 SCAPERQ9BY12 1400 aa17.07■□□□□ 0.32
PABPC1-208ENST00000519004 C22orf23Q9BZE7 217 aa17.06■□□□□ 0.32
PABPC1-208ENST00000519004 TMEM51Q9NW97 253 aa17.06■□□□□ 0.32
PABPC1-208ENST00000519004 EPRSP07814 1512 aaKnown RBP17.05■□□□□ 0.32
PABPC1-208ENST00000519004 ANP32BQ92688 251 aaKnown RBP17.05■□□□□ 0.32
PABPC1-208ENST00000519004 NKTRP30414 1462 aaKnown RBP17.05■□□□□ 0.32
PABPC1-208ENST00000519004 KIF20AO95235 890 aa17.05■□□□□ 0.32
PABPC1-208ENST00000519004 GTPBP4Q9BZE4 634 aaKnown RBP17.05■□□□□ 0.32
PABPC1-208ENST00000519004 HSCBQ8IWL3 235 aa17.04■□□□□ 0.32
PABPC1-208ENST00000519004 IPO4Q8TEX9 1081 aaKnown RBP17.04■□□□□ 0.32
PABPC1-208ENST00000519004 GBP4Q96PP9 640 aa17.04■□□□□ 0.32
PABPC1-208ENST00000519004 SASS6Q6UVJ0 657 aa17.04■□□□□ 0.32
PABPC1-208ENST00000519004 IBTKQ9P2D0 1353 aaPredicted RBP17.03■□□□□ 0.32
PABPC1-208ENST00000519004 ABCC5O15440 1437 aa17.03■□□□□ 0.32
PABPC1-208ENST00000519004 ARHGEF12Q9NZN5 1544 aa17.03■□□□□ 0.32
PABPC1-208ENST00000519004 DNMT1P26358 1616 aaKnown RBP17.03■□□□□ 0.32
PABPC1-208ENST00000519004 PTMSP20962 102 aa17.02■□□□□ 0.32
PABPC1-208ENST00000519004 PDE3AQ14432 1141 aa17.02■□□□□ 0.32
PABPC1-208ENST00000519004 RAB3GAP1Q15042 981 aa17.02■□□□□ 0.32
PABPC1-208ENST00000519004 TNNT2P45379 298 aaPredicted RBP17.02■□□□□ 0.32
PABPC1-208ENST00000519004 SPINK5Q9NQ38 1064 aaPredicted RBP17.02■□□□□ 0.32
PABPC1-208ENST00000519004 PDZRN3Q9UPQ7 1066 aa17.02■□□□□ 0.32
PABPC1-208ENST00000519004 CSPP1Q1MSJ5 1256 aa17.01■□□□□ 0.31
PABPC1-208ENST00000519004 CIZ1Q9ULV3 898 aaPredicted RBP17.01■□□□□ 0.31
PABPC1-208ENST00000519004 PRDM2Q13029 1718 aa17.01■□□□□ 0.31
PABPC1-208ENST00000519004 PDLIM2Q96JY6 352 aa17■□□□□ 0.31
PABPC1-208ENST00000519004 COG6Q9Y2V7 657 aa17■□□□□ 0.31
PABPC1-208ENST00000519004 LETM1O95202 739 aaPredicted RBP17■□□□□ 0.31
PABPC1-208ENST00000519004 SMC5Q8IY18 1101 aa17■□□□□ 0.31
PABPC1-208ENST00000519004 NINLQ9Y2I6 1382 aa17■□□□□ 0.31
PABPC1-208ENST00000519004 CAMSAP2Q08AD1 1489 aa16.99■□□□□ 0.31
PABPC1-208ENST00000519004 MFAP1P55081 439 aaKnown RBP16.99■□□□□ 0.31
PABPC1-208ENST00000519004 TAF7LQ5H9L4 462 aa16.99■□□□□ 0.31
PABPC1-208ENST00000519004 PANK1Q8TE04 598 aa16.99■□□□□ 0.31
PABPC1-208ENST00000519004 ZKSCAN5Q9Y2L8 839 aa16.99■□□□□ 0.31
PABPC1-208ENST00000519004 KIAA0586Q9BVV6 1533 aa16.99■□□□□ 0.31
PABPC1-208ENST00000519004 PANK3Q9H999 370 aa16.98■□□□□ 0.31
PABPC1-208ENST00000519004 PMFBP1Q8TBY8 1022 aa16.98■□□□□ 0.31
PABPC1-208ENST00000519004 HMGXB3Q12766 1538 aa16.98■□□□□ 0.31
PABPC1-208ENST00000519004 CC2D2AQ9P2K1 1620 aa16.98■□□□□ 0.31
PABPC1-208ENST00000519004 CUL7Q14999 1698 aa16.97■□□□□ 0.31
PABPC1-208ENST00000519004 PKD2Q13563 968 aa16.97■□□□□ 0.31
PABPC1-208ENST00000519004 PCDHB15Q9Y5E8 787 aa16.97■□□□□ 0.31
PABPC1-208ENST00000519004 COL17A1Q9UMD9 1497 aaPredicted RBP16.97■□□□□ 0.31
PABPC1-208ENST00000519004 WDR43Q15061 677 aaKnown RBP eCLIP16.96■□□□□ 0.31
PABPC1-208ENST00000519004 SNX21Q969T3 373 aa16.96■□□□□ 0.3
PABPC1-208ENST00000519004 MCM5P33992 734 aa16.95■□□□□ 0.3
PABPC1-208ENST00000519004 CBX1P83916 185 aa16.95■□□□□ 0.3
PABPC1-208ENST00000519004 KLHL40Q2TBA0 621 aa16.95■□□□□ 0.3
PABPC1-208ENST00000519004 ZNF445P59923 1031 aa16.95■□□□□ 0.3
PABPC1-208ENST00000519004 ZNF710Q8N1W2 664 aa16.95■□□□□ 0.3
PABPC1-208ENST00000519004 ANKRD30AQ9BXX3 1397 aa16.94■□□□□ 0.3
PABPC1-208ENST00000519004 KDM2AQ9Y2K7 1162 aa16.94■□□□□ 0.3
PABPC1-208ENST00000519004 ZNF830Q96NB3 372 aaPredicted RBP16.93■□□□□ 0.3
PABPC1-208ENST00000519004 MYRIPQ8NFW9 859 aa16.92■□□□□ 0.3
PABPC1-208ENST00000519004 DISP3Q9P2K9 1392 aa16.92■□□□□ 0.3
PABPC1-208ENST00000519004 ATP2B3Q16720 1220 aa16.92■□□□□ 0.3
PABPC1-208ENST00000519004 PLXNC1O60486 1568 aa16.92■□□□□ 0.3
PABPC1-208ENST00000519004 NESP48681 1621 aa16.92■□□□□ 0.3
PABPC1-208ENST00000519004 CEP170Q5SW79 1584 aa16.91■□□□□ 0.3
PABPC1-208ENST00000519004 JARID2Q92833 1246 aaPredicted RBP16.91■□□□□ 0.3
PABPC1-208ENST00000519004 RBSNQ9H1K0 784 aa16.91■□□□□ 0.3
PABPC1-208ENST00000519004 ARHGAP31Q2M1Z3 1444 aa16.91■□□□□ 0.3
PABPC1-208ENST00000519004 E9PSI1 815 aa16.91■□□□□ 0.3
PABPC1-208ENST00000519004 PPP2R1AP30153 589 aa16.91■□□□□ 0.3
PABPC1-208ENST00000519004 DDX49Q9Y6V7 483 aaKnown RBP16.91■□□□□ 0.3
PABPC1-208ENST00000519004 VGLL3A8MV65 326 aa16.9■□□□□ 0.3
PABPC1-208ENST00000519004 CLEC17AQ6ZS10 378 aa16.9■□□□□ 0.3
PABPC1-208ENST00000519004 HSP90AB1P08238 724 aaKnown RBP16.89■□□□□ 0.29
PABPC1-208ENST00000519004 DMRT2Q9Y5R5 561 aa16.89■□□□□ 0.29
PABPC1-208ENST00000519004 FAM135AQ9P2D6 1515 aa16.89■□□□□ 0.29
PABPC1-208ENST00000519004 SSFA2P28290 1259 aa16.89■□□□□ 0.29
PABPC1-208ENST00000519004 RBM25P49756 843 aaKnown RBP16.89■□□□□ 0.29
PABPC1-208ENST00000519004 TRPM1Q7Z4N2 1603 aa16.88■□□□□ 0.29
PABPC1-208ENST00000519004 ZNF644Q9H582 1327 aaPredicted RBP16.88■□□□□ 0.29
PABPC1-208ENST00000519004 CCDC146Q8IYE0 955 aa16.88■□□□□ 0.29
PABPC1-208ENST00000519004 TAF3Q5VWG9 929 aa16.88■□□□□ 0.29
PABPC1-208ENST00000519004 TSC1Q92574 1164 aa16.88■□□□□ 0.29
PABPC1-208ENST00000519004 GOLGA6L22H0YM25 854 aa16.87■□□□□ 0.29
PABPC1-208ENST00000519004 ZSCAN23Q3MJ62 389 aa16.87■□□□□ 0.29
PABPC1-208ENST00000519004 CDK13Q14004 1512 aaKnown RBP16.87■□□□□ 0.29
PABPC1-208ENST00000519004 ABCA10Q8WWZ4 1543 aa16.87■□□□□ 0.29
PABPC1-208ENST00000519004 ABCC2Q92887 1545 aa16.87■□□□□ 0.29
PABPC1-208ENST00000519004 RWDD1Q9H446 243 aaPredicted RBP16.87■□□□□ 0.29
PABPC1-208ENST00000519004 TESK2Q96S53 571 aa16.86■□□□□ 0.29
PABPC1-208ENST00000519004 CCDC39Q9UFE4 941 aa16.86■□□□□ 0.29
PABPC1-208ENST00000519004 APAF1O14727 1248 aa16.86■□□□□ 0.29
PABPC1-208ENST00000519004 BAG4O95429 457 aaKnown RBP16.86■□□□□ 0.29
PABPC1-208ENST00000519004 RLBP1P12271 317 aa16.86■□□□□ 0.29
PABPC1-208ENST00000519004 GTF2F1P35269 517 aaKnown RBP eCLIP16.86■□□□□ 0.29
PABPC1-208ENST00000519004 SHROOM2Q13796 1616 aa16.86■□□□□ 0.29
PABPC1-208ENST00000519004 TNNQ9UQP3 1299 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms