RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 HOMER1Q86YM7 354 aa16.28■□□□□ 0.2
TCOF1-214ENST00000515035 AQRO60306 1485 aaKnown RBP eCLIP16.28■□□□□ 0.22e-7■■■■■ 42.7
TCOF1-214ENST00000515035 VGFO15240 615 aaPredicted RBP16.28■□□□□ 0.2
TCOF1-214ENST00000515035 LMOD3Q0VAK6 560 aa16.28■□□□□ 0.2
TCOF1-214ENST00000515035 ZNF330Q9Y3S2 320 aaPredicted RBP16.28■□□□□ 0.2
TCOF1-214ENST00000515035 NUTM2DQ5VT03 806 aaPredicted RBP16.27■□□□□ 0.2
TCOF1-214ENST00000515035 PATL2C9JE40 543 aaKnown RBP16.27■□□□□ 0.19
TCOF1-214ENST00000515035 BRPF3Q9ULD4 1205 aa16.27■□□□□ 0.19
TCOF1-214ENST00000515035 GRIN2BQ13224 1484 aa16.27■□□□□ 0.19
TCOF1-214ENST00000515035 REC8O95072 547 aa16.26■□□□□ 0.19
TCOF1-214ENST00000515035 TOMM22Q9NS69 142 aa16.25■□□□□ 0.19
TCOF1-214ENST00000515035 IL27Q8NEV9 243 aa16.25■□□□□ 0.19
TCOF1-214ENST00000515035 CCDC9Q9Y3X0 531 aaKnown RBP16.24■□□□□ 0.19
TCOF1-214ENST00000515035 NUCB2P80303 420 aa16.24■□□□□ 0.19
TCOF1-214ENST00000515035 TAF7LQ5H9L4 462 aa16.24■□□□□ 0.19
TCOF1-214ENST00000515035 DIAPH3Q9NSV4 1193 aa16.24■□□□□ 0.19
TCOF1-214ENST00000515035 IFT57Q9NWB7 429 aa16.24■□□□□ 0.19
TCOF1-214ENST00000515035 NASPP49321 788 aaPredicted RBP16.23■□□□□ 0.19
TCOF1-214ENST00000515035 ARGLU1Q9NWB6 273 aaPredicted RBP16.23■□□□□ 0.19
TCOF1-214ENST00000515035 MCTP1Q6DN14 999 aa16.23■□□□□ 0.19
TCOF1-214ENST00000515035 CHMP4CQ96CF2 233 aa16.23■□□□□ 0.19
TCOF1-214ENST00000515035 ST20-MTHFSA0A0A6YYL1 179 aa16.23■□□□□ 0.19
TCOF1-214ENST00000515035 ELL2O00472 640 aaPredicted RBP16.23■□□□□ 0.19
TCOF1-214ENST00000515035 CALRP27797 417 aaKnown RBP16.23■□□□□ 0.19
TCOF1-214ENST00000515035 MRC2Q9UBG0 1479 aa16.22■□□□□ 0.19
TCOF1-214ENST00000515035 TPM2P07951 284 aa16.22■□□□□ 0.19
TCOF1-214ENST00000515035 PANK3Q9H999 370 aa16.22■□□□□ 0.19
TCOF1-214ENST00000515035 NOM1Q5C9Z4 860 aaKnown RBP16.22■□□□□ 0.19
TCOF1-214ENST00000515035 IPO7O95373 1038 aaKnown RBP16.22■□□□□ 0.19
TCOF1-214ENST00000515035 BICD2Q8TD16 824 aa16.22■□□□□ 0.19
TCOF1-214ENST00000515035 TRAK1Q9UPV9 953 aa16.22■□□□□ 0.19
TCOF1-214ENST00000515035 MYOM3Q5VTT5 1437 aa16.21■□□□□ 0.19
TCOF1-214ENST00000515035 MNS1Q8NEH6 495 aa16.21■□□□□ 0.19
TCOF1-214ENST00000515035 CCDC39Q9UFE4 941 aa16.2■□□□□ 0.18
TCOF1-214ENST00000515035 DDX19BQ9UMR2 479 aa16.2■□□□□ 0.18
TCOF1-214ENST00000515035 CFTRP13569 1480 aa16.2■□□□□ 0.18
TCOF1-214ENST00000515035 C22orf23Q9BZE7 217 aa16.2■□□□□ 0.18
TCOF1-214ENST00000515035 AMPHP49418 695 aa16.2■□□□□ 0.18
TCOF1-214ENST00000515035 APAF1O14727 1248 aa16.19■□□□□ 0.18
TCOF1-214ENST00000515035 ZKSCAN1P17029 563 aaPredicted RBP16.18■□□□□ 0.18
TCOF1-214ENST00000515035 IFT140Q96RY7 1462 aa16.18■□□□□ 0.18
TCOF1-214ENST00000515035 TRAK2O60296 914 aa16.17■□□□□ 0.18
TCOF1-214ENST00000515035 HSP90B2PQ58FF3 399 aa16.17■□□□□ 0.18
TCOF1-214ENST00000515035 CCDC66A2RUB6 948 aa16.17■□□□□ 0.18
TCOF1-214ENST00000515035 MARCH6O60337 910 aa16.17■□□□□ 0.18
TCOF1-214ENST00000515035 SASS6Q6UVJ0 657 aa16.17■□□□□ 0.18
TCOF1-214ENST00000515035 VPS37CA5D8V6 355 aaPredicted RBP16.16■□□□□ 0.18
TCOF1-214ENST00000515035 RNF214Q8ND24 703 aa16.16■□□□□ 0.18
TCOF1-214ENST00000515035 ACBD3Q9H3P7 528 aa16.16■□□□□ 0.18
TCOF1-214ENST00000515035 FRAT2O75474 233 aaPredicted RBP16.16■□□□□ 0.18
TCOF1-214ENST00000515035 RUFY2Q8WXA3 655 aa16.16■□□□□ 0.18
TCOF1-214ENST00000515035 DZIP1LQ8IYY4 767 aaKnown RBP16.16■□□□□ 0.18
TCOF1-214ENST00000515035 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.16■□□□□ 0.18
TCOF1-214ENST00000515035 PRM3Q9NNZ6 103 aa16.15■□□□□ 0.18
TCOF1-214ENST00000515035 CC2D2AQ9P2K1 1620 aa16.15■□□□□ 0.18
TCOF1-214ENST00000515035 NUTM2FA1L443 756 aa16.15■□□□□ 0.18
TCOF1-214ENST00000515035 CPLX2Q6PUV4 134 aaKnown RBP16.15■□□□□ 0.18
TCOF1-214ENST00000515035 ANO2Q9NQ90 1003 aa16.15■□□□□ 0.18
TCOF1-214ENST00000515035 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.15■□□□□ 0.18
TCOF1-214ENST00000515035 ANKRD20A12PQ8NF67 263 aa16.14■□□□□ 0.17
TCOF1-214ENST00000515035 BCL11BQ9C0K0 894 aaPredicted RBP16.14■□□□□ 0.17
TCOF1-214ENST00000515035 EVC2Q86UK5 1308 aa16.14■□□□□ 0.17
TCOF1-214ENST00000515035 SMC3Q9UQE7 1217 aa16.14■□□□□ 0.17
TCOF1-214ENST00000515035 RBM10P98175 930 aaKnown RBP16.13■□□□□ 0.17
TCOF1-214ENST00000515035 AKAP17AQ02040 695 aaKnown RBP16.13■□□□□ 0.17
TCOF1-214ENST00000515035 RUFY1Q96T51 708 aa16.13■□□□□ 0.17
TCOF1-214ENST00000515035 HMGXB3Q12766 1538 aa16.13■□□□□ 0.17
TCOF1-214ENST00000515035 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.13■□□□□ 0.17
TCOF1-214ENST00000515035 PCMTD1Q96MG8 357 aaPredicted RBP16.13■□□□□ 0.17
TCOF1-214ENST00000515035 CUX1P39880 1505 aa16.13■□□□□ 0.17
TCOF1-214ENST00000515035 CWC15Q9P013 229 aaKnown RBP16.13■□□□□ 0.17
TCOF1-214ENST00000515035 HMGN5P82970 282 aaKnown RBP16.12■□□□□ 0.17
TCOF1-214ENST00000515035 INTS3Q68E01 1043 aaKnown RBP16.12■□□□□ 0.17
TCOF1-214ENST00000515035 AK7Q96M32 723 aa16.12■□□□□ 0.17
TCOF1-214ENST00000515035 LNPKQ9C0E8 428 aa16.12■□□□□ 0.17
TCOF1-214ENST00000515035 PRG4Q92954 1404 aaPredicted RBP16.12■□□□□ 0.17
TCOF1-214ENST00000515035 TMX4Q9H1E5 349 aaPredicted RBP16.12■□□□□ 0.17
TCOF1-214ENST00000515035 NESP48681 1621 aa16.11■□□□□ 0.17
TCOF1-214ENST00000515035 SYNJ2O15056 1496 aa16.11■□□□□ 0.17
TCOF1-214ENST00000515035 CCDC73Q6ZRK6 1079 aa16.11■□□□□ 0.17
TCOF1-214ENST00000515035 PRKCSHP14314 528 aaPredicted RBP16.11■□□□□ 0.17
TCOF1-214ENST00000515035 FBXW7Q969H0 707 aa16.11■□□□□ 0.17
TCOF1-214ENST00000515035 NGEFQ8N5V2 710 aa16.1■□□□□ 0.17
TCOF1-214ENST00000515035 STAC3Q96MF2 364 aa16.1■□□□□ 0.17
TCOF1-214ENST00000515035 CAVIN1Q6NZI2 390 aaKnown RBP16.1■□□□□ 0.17
TCOF1-214ENST00000515035 USP47Q96K76 1375 aa16.1■□□□□ 0.17
TCOF1-214ENST00000515035 CPLX1O14810 134 aa16.1■□□□□ 0.17
TCOF1-214ENST00000515035 CDR1P51861 262 aa16.1■□□□□ 0.17
TCOF1-214ENST00000515035 TRIM29Q14134 588 aa16.1■□□□□ 0.17
TCOF1-214ENST00000515035 RRP12Q5JTH9 1297 aaKnown RBP16.1■□□□□ 0.17
TCOF1-214ENST00000515035 AEBP2Q6ZN18 517 aaPredicted RBP16.1■□□□□ 0.17
TCOF1-214ENST00000515035 SYNE3Q6ZMZ3 975 aa16.1■□□□□ 0.17
TCOF1-214ENST00000515035 LTV1Q96GA3 475 aaPredicted RBP16.09■□□□□ 0.17
TCOF1-214ENST00000515035 HOOK1Q9UJC3 728 aaKnown RBP16.09■□□□□ 0.17
TCOF1-214ENST00000515035 H0YHG0 523 aa16.09■□□□□ 0.17
TCOF1-214ENST00000515035 COG3Q96JB2 828 aa16.09■□□□□ 0.17
TCOF1-214ENST00000515035 CCDC173Q0VFZ6 552 aa16.09■□□□□ 0.17
TCOF1-214ENST00000515035 VPS53Q5VIR6 699 aa16.09■□□□□ 0.17
TCOF1-214ENST00000515035 APPP05067 770 aa16.08■□□□□ 0.17
TCOF1-214ENST00000515035 API5Q9BZZ5 524 aaKnown RBP16.08■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms