RNA–Protein interactions for RNA: ENST00000508974.5

UBE2D3-228, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 4

Gene UBE2D3, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-228ENST00000508974 SCAF1Q9H7N4 1312 aaKnown RBP22.42■■□□□ 1.18
UBE2D3-228ENST00000508974 BCANQ96GW7 911 aa22.4■■□□□ 1.18
UBE2D3-228ENST00000508974 LRRC7Q96NW7 1537 aa22.4■■□□□ 1.18
UBE2D3-228ENST00000508974 PIP4K2BP78356 416 aa22.39■■□□□ 1.17
UBE2D3-228ENST00000508974 SLC26A8Q96RN1 970 aa22.38■■□□□ 1.17
UBE2D3-228ENST00000508974 XIRP1Q702N8 1843 aaKnown RBP22.37■■□□□ 1.17
UBE2D3-228ENST00000508974 RIMS2Q9UQ26 1411 aa22.37■■□□□ 1.17
UBE2D3-228ENST00000508974 PPP1R15AO75807 674 aaPredicted RBP22.36■■□□□ 1.17
UBE2D3-228ENST00000508974 ZFYVE9O95405 1425 aa22.36■■□□□ 1.17
UBE2D3-228ENST00000508974 HFM1A2PYH4 1435 aa22.35■■□□□ 1.17
UBE2D3-228ENST00000508974 NUTM2DQ5VT03 806 aaPredicted RBP22.35■■□□□ 1.17
UBE2D3-228ENST00000508974 TOM1O60784 492 aa22.33■■□□□ 1.17
UBE2D3-228ENST00000508974 TRIM52Q96A61 297 aa22.33■■□□□ 1.17
UBE2D3-228ENST00000508974 ALKQ9UM73 1620 aa22.32■■□□□ 1.16
UBE2D3-228ENST00000508974 CLTCL1P53675 1640 aa22.31■■□□□ 1.16
UBE2D3-228ENST00000508974 PLEKHG1Q9ULL1 1385 aa22.29■■□□□ 1.16
UBE2D3-228ENST00000508974 HDGFP51858 240 aaKnown RBP22.27■■□□□ 1.16
UBE2D3-228ENST00000508974 RBM33Q96EV2 1170 aaKnown RBP22.27■■□□□ 1.16
UBE2D3-228ENST00000508974 NWD1Q149M9 1564 aa22.26■■□□□ 1.15
UBE2D3-228ENST00000508974 CHD2O14647 1828 aaKnown RBP22.26■■□□□ 1.15
UBE2D3-228ENST00000508974 KIF1BO60333 1816 aa22.26■■□□□ 1.15
UBE2D3-228ENST00000508974 TRPM2O94759 1503 aa22.26■■□□□ 1.15
UBE2D3-228ENST00000508974 KCNA6P17658 529 aa22.25■■□□□ 1.15
UBE2D3-228ENST00000508974 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.25■■□□□ 1.15
UBE2D3-228ENST00000508974 HSPA1LP34931 641 aa22.24■■□□□ 1.15
UBE2D3-228ENST00000508974 ZNF326Q5BKZ1 582 aaKnown RBP22.24■■□□□ 1.15
UBE2D3-228ENST00000508974 TMEM94Q12767 1356 aa22.23■■□□□ 1.15
UBE2D3-228ENST00000508974 DISP3Q9P2K9 1392 aa22.23■■□□□ 1.15
UBE2D3-228ENST00000508974 PROSER2Q86WR7 435 aaPredicted RBP22.22■■□□□ 1.15
UBE2D3-228ENST00000508974 SLC4A1APQ9BWU0 796 aaKnown RBP22.22■■□□□ 1.15
UBE2D3-228ENST00000508974 NKTRP30414 1462 aaKnown RBP22.21■■□□□ 1.15
UBE2D3-228ENST00000508974 ADAMTS13Q76LX8 1427 aa22.2■■□□□ 1.14
UBE2D3-228ENST00000508974 DIP2AQ14689 1571 aa22.19■■□□□ 1.14
UBE2D3-228ENST00000508974 NRXN3Q9Y4C0 1643 aa22.17■■□□□ 1.14
UBE2D3-228ENST00000508974 TBX22Q9Y458 520 aa22.16■■□□□ 1.14
UBE2D3-228ENST00000508974 NEXMIFQ5QGS0 1516 aa22.16■■□□□ 1.14
UBE2D3-228ENST00000508974 SETBP1Q9Y6X0 1596 aa22.12■■□□□ 1.13
UBE2D3-228ENST00000508974 MSH6P52701 1360 aa22.11■■□□□ 1.13
UBE2D3-228ENST00000508974 ROBO1Q9Y6N7 1651 aa22.11■■□□□ 1.13
UBE2D3-228ENST00000508974 PTPRUQ92729 1446 aa22.09■■□□□ 1.13
UBE2D3-228ENST00000508974 C14orf37Q86TY3 774 aa22.09■■□□□ 1.13
UBE2D3-228ENST00000508974 SETD5Q9C0A6 1442 aa22.08■■□□□ 1.13
UBE2D3-228ENST00000508974 PPLO60437 1756 aa22.08■■□□□ 1.13
UBE2D3-228ENST00000508974 MPHOSPH9Q99550 1183 aa22.07■■□□□ 1.12
UBE2D3-228ENST00000508974 AMOTL2Q9Y2J4 779 aa22.07■■□□□ 1.12
UBE2D3-228ENST00000508974 PIK3R4Q99570 1358 aa22.07■■□□□ 1.12
UBE2D3-228ENST00000508974 MED1Q15648 1581 aaPredicted RBP22.07■■□□□ 1.12
UBE2D3-228ENST00000508974 XRN1Q8IZH2 1706 aaKnown RBP22.06■■□□□ 1.12
UBE2D3-228ENST00000508974 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.05■■□□□ 1.12
UBE2D3-228ENST00000508974 METP08581 1390 aa22.04■■□□□ 1.12
UBE2D3-228ENST00000508974 CCDC144AA2RUR9 1427 aa22.04■■□□□ 1.12
UBE2D3-228ENST00000508974 ILDR2Q71H61 639 aa22.03■■□□□ 1.12
UBE2D3-228ENST00000508974 RAB3GAP2Q9H2M9 1393 aa22.02■■□□□ 1.12
UBE2D3-228ENST00000508974 FAM135BQ49AJ0 1406 aa22.02■■□□□ 1.12
UBE2D3-228ENST00000508974 SETD1AO15047 1707 aaKnown RBP22.02■■□□□ 1.12
UBE2D3-228ENST00000508974 RGL3Q3MIN7 710 aa21.99■■□□□ 1.11
UBE2D3-228ENST00000508974 SLAIN2Q9P270 581 aa21.99■■□□□ 1.11
UBE2D3-228ENST00000508974 PHLPP1O60346 1717 aa21.99■■□□□ 1.11
UBE2D3-228ENST00000508974 IFT172Q9UG01 1749 aa21.98■■□□□ 1.11
UBE2D3-228ENST00000508974 VGFO15240 615 aaPredicted RBP21.98■■□□□ 1.11
UBE2D3-228ENST00000508974 NCOA3Q9Y6Q9 1424 aa21.97■■□□□ 1.11
UBE2D3-228ENST00000508974 RPGRIP1LQ68CZ1 1315 aa21.97■■□□□ 1.11
UBE2D3-228ENST00000508974 NALCNQ8IZF0 1738 aa21.95■■□□□ 1.1
UBE2D3-228ENST00000508974 ATF3P18847 181 aa21.95■■□□□ 1.1
UBE2D3-228ENST00000508974 C19orf44Q9H6X5 657 aa21.94■■□□□ 1.1
UBE2D3-228ENST00000508974 SPATA31E1Q6ZUB1 1445 aa21.94■■□□□ 1.1
UBE2D3-228ENST00000508974 CADPS2Q86UW7 1296 aa21.92■■□□□ 1.1
UBE2D3-228ENST00000508974 ADGRF5Q8IZF2 1346 aa21.91■■□□□ 1.1
UBE2D3-228ENST00000508974 ACIN1Q9UKV3 1341 aaKnown RBP21.9■■□□□ 1.1
UBE2D3-228ENST00000508974 COL16A1Q07092 1604 aaPredicted RBP21.88■■□□□ 1.09
UBE2D3-228ENST00000508974 DCCP43146 1447 aa21.87■■□□□ 1.09
UBE2D3-228ENST00000508974 ADGRL3Q9HAR2 1447 aa21.87■■□□□ 1.09
UBE2D3-228ENST00000508974 ROBO2Q9HCK4 1378 aa21.87■■□□□ 1.09
UBE2D3-228ENST00000508974 ANKRD30BQ9BXX2 1392 aa21.86■■□□□ 1.09
UBE2D3-228ENST00000508974 PTCH1Q13635 1447 aa21.85■■□□□ 1.09
UBE2D3-228ENST00000508974 MST1RQ04912 1400 aa21.84■■□□□ 1.09
UBE2D3-228ENST00000508974 AHDC1Q5TGY3 1603 aaPredicted RBP21.83■■□□□ 1.08
UBE2D3-228ENST00000508974 ASXL1Q8IXJ9 1541 aa21.82■■□□□ 1.08
UBE2D3-228ENST00000508974 BRINP3Q76B58 766 aa21.82■■□□□ 1.08
UBE2D3-228ENST00000508974 PIK3C2GO75747 1445 aa21.81■■□□□ 1.08
UBE2D3-228ENST00000508974 STK26Q9P289 416 aa21.81■■□□□ 1.08
UBE2D3-228ENST00000508974 TMEM132EQ6IEE7 984 aa21.79■■□□□ 1.08
UBE2D3-228ENST00000508974 NHSL1Q5SYE7 1610 aa21.79■■□□□ 1.08
UBE2D3-228ENST00000508974 JCADQ9P266 1359 aa21.78■■□□□ 1.08
UBE2D3-228ENST00000508974 KNDC1Q76NI1 1749 aa21.77■■□□□ 1.08
UBE2D3-228ENST00000508974 SOCS7O14512 581 aa21.77■■□□□ 1.08
UBE2D3-228ENST00000508974 PRAG1Q86YV5 1406 aa21.77■■□□□ 1.08
UBE2D3-228ENST00000508974 LAMC1P11047 1609 aa21.76■■□□□ 1.07
UBE2D3-228ENST00000508974 MYOM2P54296 1465 aa21.76■■□□□ 1.07
UBE2D3-228ENST00000508974 SHPRHQ149N8 1683 aa21.75■■□□□ 1.07
UBE2D3-228ENST00000508974 DDX17Q92841 729 aaKnown RBP21.75■■□□□ 1.07
UBE2D3-228ENST00000508974 C1orf167Q5SNV9 1468 aa21.74■■□□□ 1.07
UBE2D3-228ENST00000508974 HRCP23327 699 aa21.73■■□□□ 1.07
UBE2D3-228ENST00000508974 WAPLQ7Z5K2 1190 aa21.73■■□□□ 1.07
UBE2D3-228ENST00000508974 LRPPRCP42704 1394 aaKnown RBP21.73■■□□□ 1.07
UBE2D3-228ENST00000508974 NRXN1Q9ULB1 1477 aa21.72■■□□□ 1.07
UBE2D3-228ENST00000508974 CFAP70Q5T0N1 1121 aa21.72■■□□□ 1.07
UBE2D3-228ENST00000508974 RGS17Q9UGC6 210 aaPredicted RBP21.72■■□□□ 1.07
UBE2D3-228ENST00000508974 YTHDC2Q9H6S0 1430 aaKnown RBP21.72■■□□□ 1.07
UBE2D3-228ENST00000508974 CDC42BPGQ6DT37 1551 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms