RNA–Protein interactions for RNA: ENST00000504719.6

PVT1-201, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 754 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-201ENST00000504719 SLC26A8Q96RN1 970 aa38.19■■■■□ 3.7
PVT1-201ENST00000504719 PLEKHG1Q9ULL1 1385 aa38.18■■■■□ 3.7
PVT1-201ENST00000504719 PPP1R15AO75807 674 aaPredicted RBP38.15■■■■□ 3.7
PVT1-201ENST00000504719 ABCF1Q8NE71 845 aaKnown RBP eCLIP38.15■■■■□ 3.7
PVT1-201ENST00000504719 TRIM52Q96A61 297 aa38.14■■■■□ 3.7
PVT1-201ENST00000504719 BCANQ96GW7 911 aa38.14■■■■□ 3.7
PVT1-201ENST00000504719 XIRP1Q702N8 1843 aaKnown RBP38.14■■■■□ 3.7
PVT1-201ENST00000504719 ALKQ9UM73 1620 aa38.13■■■■□ 3.69
PVT1-201ENST00000504719 KCNA6P17658 529 aa38.12■■■■□ 3.69
PVT1-201ENST00000504719 PIP4K2BP78356 416 aa38.1■■■■□ 3.69
PVT1-201ENST00000504719 SENP3Q9H4L4 574 aaPredicted RBP38.08■■■■□ 3.69
PVT1-201ENST00000504719 SCAF1Q9H7N4 1312 aaKnown RBP38.08■■■■□ 3.69
PVT1-201ENST00000504719 TRPM2O94759 1503 aa38.07■■■■□ 3.69
PVT1-201ENST00000504719 NWD1Q149M9 1564 aa38.06■■■■□ 3.68
PVT1-201ENST00000504719 NUTM2DQ5VT03 806 aaPredicted RBP38.06■■■■□ 3.68
PVT1-201ENST00000504719 CLTCL1P53675 1640 aa38.05■■■■□ 3.68
PVT1-201ENST00000504719 CHD2O14647 1828 aaKnown RBP38.04■■■■□ 3.68
PVT1-201ENST00000504719 SLC4A1APQ9BWU0 796 aaKnown RBP38.02■■■■□ 3.68
PVT1-201ENST00000504719 TBX22Q9Y458 520 aa38.02■■■■□ 3.68
PVT1-201ENST00000504719 KIF1BO60333 1816 aa37.99■■■■□ 3.67
PVT1-201ENST00000504719 NKTRP30414 1462 aaKnown RBP37.99■■■■□ 3.67
PVT1-201ENST00000504719 ADAMTS13Q76LX8 1427 aa37.99■■■■□ 3.67
PVT1-201ENST00000504719 TMEM94Q12767 1356 aa37.98■■■■□ 3.67
PVT1-201ENST00000504719 PROSER2Q86WR7 435 aaPredicted RBP37.97■■■■□ 3.67
PVT1-201ENST00000504719 DIP2AQ14689 1571 aa37.97■■■■□ 3.67
PVT1-201ENST00000504719 HSPA1LP34931 641 aa37.95■■■■□ 3.67
PVT1-201ENST00000504719 ZNF326Q5BKZ1 582 aaKnown RBP37.95■■■■□ 3.67
PVT1-201ENST00000504719 RBM33Q96EV2 1170 aaKnown RBP37.89■■■■□ 3.66
PVT1-201ENST00000504719 NEXMIFQ5QGS0 1516 aa37.88■■■■□ 3.65
PVT1-201ENST00000504719 PIK3R4Q99570 1358 aa37.88■■■■□ 3.65
PVT1-201ENST00000504719 NRXN3Q9Y4C0 1643 aa37.87■■■■□ 3.65
PVT1-201ENST00000504719 SETBP1Q9Y6X0 1596 aa37.85■■■■□ 3.65
PVT1-201ENST00000504719 DISP3Q9P2K9 1392 aa37.83■■■■□ 3.65
PVT1-201ENST00000504719 FOXD1Q16676 465 aa37.83■■■■□ 3.65
PVT1-201ENST00000504719 SETD5Q9C0A6 1442 aa37.83■■■■□ 3.65
PVT1-201ENST00000504719 MPHOSPH9Q99550 1183 aa37.82■■■■□ 3.64
PVT1-201ENST00000504719 ACIN1Q9UKV3 1341 aaKnown RBP37.79■■■■□ 3.64
PVT1-201ENST00000504719 PTPRUQ92729 1446 aa37.78■■■■□ 3.64
PVT1-201ENST00000504719 MSH6P52701 1360 aa37.77■■■■□ 3.64
PVT1-201ENST00000504719 NCOA3Q9Y6Q9 1424 aa37.76■■■■□ 3.63
PVT1-201ENST00000504719 FAM135BQ49AJ0 1406 aa37.74■■■■□ 3.63
PVT1-201ENST00000504719 AMOTL2Q9Y2J4 779 aa37.74■■■■□ 3.63
PVT1-201ENST00000504719 RPGRIP1LQ68CZ1 1315 aa37.72■■■■□ 3.63
PVT1-201ENST00000504719 PPLO60437 1756 aa37.7■■■■□ 3.63
PVT1-201ENST00000504719 XRN1Q8IZH2 1706 aaKnown RBP37.7■■■■□ 3.63
PVT1-201ENST00000504719 VGFO15240 615 aaPredicted RBP37.69■■■■□ 3.62
PVT1-201ENST00000504719 CCDC144AA2RUR9 1427 aa37.69■■■■□ 3.62
PVT1-201ENST00000504719 METP08581 1390 aa37.68■■■■□ 3.62
PVT1-201ENST00000504719 RAB3GAP2Q9H2M9 1393 aa37.68■■■■□ 3.62
PVT1-201ENST00000504719 ROBO1Q9Y6N7 1651 aa37.66■■■■□ 3.62
PVT1-201ENST00000504719 SIPA1L2Q9P2F8 1722 aaPredicted RBP37.63■■■■□ 3.61
PVT1-201ENST00000504719 C14orf37Q86TY3 774 aa37.62■■■■□ 3.61
PVT1-201ENST00000504719 SLAIN2Q9P270 581 aa37.62■■■■□ 3.61
PVT1-201ENST00000504719 SETD1AO15047 1707 aaKnown RBP37.61■■■■□ 3.61
PVT1-201ENST00000504719 C19orf44Q9H6X5 657 aa37.6■■■■□ 3.61
PVT1-201ENST00000504719 MED1Q15648 1581 aaPredicted RBP37.59■■■■□ 3.61
PVT1-201ENST00000504719 SPATA31E1Q6ZUB1 1445 aa37.59■■■■□ 3.61
PVT1-201ENST00000504719 ILDR2Q71H61 639 aa37.55■■■■□ 3.6
PVT1-201ENST00000504719 IFT172Q9UG01 1749 aa37.54■■■■□ 3.6
PVT1-201ENST00000504719 CADPS2Q86UW7 1296 aa37.54■■■■□ 3.6
PVT1-201ENST00000504719 RGL3Q3MIN7 710 aa37.53■■■■□ 3.6
PVT1-201ENST00000504719 ATF3P18847 181 aa37.51■■■■□ 3.6
PVT1-201ENST00000504719 HRCP23327 699 aa37.48■■■■□ 3.59
PVT1-201ENST00000504719 DCCP43146 1447 aa37.47■■■■□ 3.59
PVT1-201ENST00000504719 ADGRF5Q8IZF2 1346 aa37.47■■■■□ 3.59
PVT1-201ENST00000504719 ANKRD30BQ9BXX2 1392 aa37.46■■■■□ 3.59
PVT1-201ENST00000504719 PHLPP1O60346 1717 aa37.44■■■■□ 3.58
PVT1-201ENST00000504719 PTCH1Q13635 1447 aa37.43■■■■□ 3.58
PVT1-201ENST00000504719 PRAG1Q86YV5 1406 aa37.41■■■■□ 3.58
PVT1-201ENST00000504719 NALCNQ8IZF0 1738 aa37.4■■■■□ 3.58
PVT1-201ENST00000504719 ADGRL3Q9HAR2 1447 aa37.4■■■■□ 3.58
PVT1-201ENST00000504719 ROBO2Q9HCK4 1378 aa37.38■■■■□ 3.57
PVT1-201ENST00000504719 PIK3C2GO75747 1445 aa37.34■■■■□ 3.57
PVT1-201ENST00000504719 MST1RQ04912 1400 aa37.34■■■■□ 3.57
PVT1-201ENST00000504719 COL16A1Q07092 1604 aaPredicted RBP37.33■■■■□ 3.57
PVT1-201ENST00000504719 AHDC1Q5TGY3 1603 aaPredicted RBP37.32■■■■□ 3.57
PVT1-201ENST00000504719 BRINP3Q76B58 766 aa37.31■■■■□ 3.56
PVT1-201ENST00000504719 PHF23Q9BUL5 403 aaPredicted RBP37.31■■■■□ 3.56
PVT1-201ENST00000504719 MYOM2P54296 1465 aa37.26■■■■□ 3.56
PVT1-201ENST00000504719 NRXN1Q9ULB1 1477 aa37.26■■■■□ 3.56
PVT1-201ENST00000504719 ASXL1Q8IXJ9 1541 aa37.26■■■■□ 3.56
PVT1-201ENST00000504719 JCADQ9P266 1359 aa37.26■■■■□ 3.55
PVT1-201ENST00000504719 TECPR2O15040 1411 aa37.23■■■■□ 3.55
PVT1-201ENST00000504719 LRPPRCP42704 1394 aaKnown RBP37.23■■■■□ 3.55
PVT1-201ENST00000504719 KNDC1Q76NI1 1749 aa37.22■■■■□ 3.55
PVT1-201ENST00000504719 TMEM132EQ6IEE7 984 aa37.22■■■■□ 3.55
PVT1-201ENST00000504719 C14orf93Q9H972 538 aaKnown RBP37.21■■■■□ 3.55
PVT1-201ENST00000504719 SOCS7O14512 581 aa37.2■■■■□ 3.55
PVT1-201ENST00000504719 STK26Q9P289 416 aa37.2■■■■□ 3.55
PVT1-201ENST00000504719 ABCC11Q96J66 1382 aa37.19■■■■□ 3.54
PVT1-201ENST00000504719 NHSL1Q5SYE7 1610 aa37.19■■■■□ 3.54
PVT1-201ENST00000504719 C1orf167Q5SNV9 1468 aa37.18■■■■□ 3.54
PVT1-201ENST00000504719 LAMC1P11047 1609 aa37.18■■■■□ 3.54
PVT1-201ENST00000504719 YTHDC2Q9H6S0 1430 aaKnown RBP37.16■■■■□ 3.54
PVT1-201ENST00000504719 CFAP70Q5T0N1 1121 aa37.15■■■■□ 3.54
PVT1-201ENST00000504719 SHPRHQ149N8 1683 aa37.14■■■■□ 3.54
PVT1-201ENST00000504719 WAPLQ7Z5K2 1190 aa37.13■■■■□ 3.53
PVT1-201ENST00000504719 RGS17Q9UGC6 210 aaPredicted RBP37.13■■■■□ 3.53
PVT1-201ENST00000504719 CDC42BPGQ6DT37 1551 aa37.11■■■■□ 3.53
PVT1-201ENST00000504719 SPATA31A6Q5VVP1 1343 aa37.09■■■■□ 3.53
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms