RNA–Protein interactions for RNA: ENST00000489535.2

SMC6-209, Transcript of structural maintenance of chromosomes 6, humanhuman

TSL 2

Gene SMC6, Length 550 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-209ENST00000489535 COPS2P61201 443 aa13.22□□□□□ -0.29
SMC6-209ENST00000489535 TMUB1Q9BVT8 246 aa13.22□□□□□ -0.29
SMC6-209ENST00000489535 CDHR5Q9HBB8 845 aa13.22□□□□□ -0.29
SMC6-209ENST00000489535 HDGFP51858 240 aaKnown RBP13.21□□□□□ -0.29
SMC6-209ENST00000489535 RBM27Q9P2N5 1060 aaKnown RBP13.21□□□□□ -0.29
SMC6-209ENST00000489535 GRXCR2A6NFK2 248 aa13.18□□□□□ -0.3
SMC6-209ENST00000489535 EMID1Q96A84 441 aaPredicted RBP13.18□□□□□ -0.3
SMC6-209ENST00000489535 SWT1Q5T5J6 900 aaKnown RBP13.17□□□□□ -0.3
SMC6-209ENST00000489535 NECTIN2Q92692 538 aa13.17□□□□□ -0.3
SMC6-209ENST00000489535 ZPR1O75312 459 aa13.16□□□□□ -0.3
SMC6-209ENST00000489535 TTC13Q8NBP0 860 aa13.16□□□□□ -0.3
SMC6-209ENST00000489535 OSBPP22059 807 aa13.15□□□□□ -0.3
SMC6-209ENST00000489535 MYT1Q01538 1121 aa13.14□□□□□ -0.31
SMC6-209ENST00000489535 SLF2Q8IX21 1173 aa13.14□□□□□ -0.31
SMC6-209ENST00000489535 ARIH1Q9Y4X5 557 aaPredicted RBP13.13□□□□□ -0.31
SMC6-209ENST00000489535 RNF223E7ERA6 249 aa13.12□□□□□ -0.31
SMC6-209ENST00000489535 SLC19A1P41440 591 aa13.12□□□□□ -0.31
SMC6-209ENST00000489535 POTECB2RU33 542 aa13.11□□□□□ -0.31
SMC6-209ENST00000489535 DGAT1O75907 488 aa13.09□□□□□ -0.31
SMC6-209ENST00000489535 PKDCCQ504Y2 493 aa13.09□□□□□ -0.31
SMC6-209ENST00000489535 PADI6Q6TGC4 694 aa13.09□□□□□ -0.31
SMC6-209ENST00000489535 SPRYD7Q5W111 196 aa13.08□□□□□ -0.32
SMC6-209ENST00000489535 NPDC1Q9NQX5 325 aaPredicted RBP13.08□□□□□ -0.32
SMC6-209ENST00000489535 PRR20EP86478 221 aa13.07□□□□□ -0.32
SMC6-209ENST00000489535 PRR20CP86479 221 aa13.07□□□□□ -0.32
SMC6-209ENST00000489535 PRR20DP86480 221 aa13.07□□□□□ -0.32
SMC6-209ENST00000489535 PRR20BP86481 221 aa13.07□□□□□ -0.32
SMC6-209ENST00000489535 PRR20AP86496 221 aa13.07□□□□□ -0.32
SMC6-209ENST00000489535 E2F4Q16254 413 aa13.07□□□□□ -0.32
SMC6-209ENST00000489535 ZNF598Q86UK7 904 aaKnown RBP13.06□□□□□ -0.32
SMC6-209ENST00000489535 PCDHB3Q9Y5E6 796 aa13.06□□□□□ -0.32
SMC6-209ENST00000489535 BLOC1S3Q6QNY0 202 aa13.05□□□□□ -0.32
SMC6-209ENST00000489535 EYA1Q99502 592 aa13.05□□□□□ -0.32
SMC6-209ENST00000489535 ABCC8Q09428 1581 aa13.03□□□□□ -0.32
SMC6-209ENST00000489535 TLL1O43897 1013 aa13.03□□□□□ -0.32
SMC6-209ENST00000489535 PRR14Q9BWN1 585 aa13.03□□□□□ -0.32
SMC6-209ENST00000489535 ANKLE1Q8NAG6 615 aa13.02□□□□□ -0.33
SMC6-209ENST00000489535 SLC4A3P48751 1232 aa13□□□□□ -0.33
SMC6-209ENST00000489535 LCE2AQ5TA79 106 aaPredicted RBP13□□□□□ -0.33
SMC6-209ENST00000489535 LIAT1Q6ZQX7 453 aa13□□□□□ -0.33
SMC6-209ENST00000489535 PPEF1O14829 653 aaPredicted RBP12.99□□□□□ -0.33
SMC6-209ENST00000489535 GDF9O60383 454 aa12.98□□□□□ -0.33
SMC6-209ENST00000489535 ZNF697Q5TEC3 545 aa12.98□□□□□ -0.33
SMC6-209ENST00000489535 FAM187AA6NFU0 413 aa12.97□□□□□ -0.33
SMC6-209ENST00000489535 CFTRP13569 1480 aa12.97□□□□□ -0.33
SMC6-209ENST00000489535 S1PR4O95977 384 aa12.96□□□□□ -0.33
SMC6-209ENST00000489535 TNFRSF10AO00220 468 aa12.95□□□□□ -0.34
SMC6-209ENST00000489535 TREML4Q6UXN2 200 aa12.95□□□□□ -0.34
SMC6-209ENST00000489535 BBXQ8WY36 941 aaPredicted RBP12.95□□□□□ -0.34
SMC6-209ENST00000489535 LAMC3Q9Y6N6 1575 aa12.94□□□□□ -0.34
SMC6-209ENST00000489535 BIVM-ERCC5R4GMW8 1640 aa12.93□□□□□ -0.34
SMC6-209ENST00000489535 ST8SIA5O15466 376 aa12.92□□□□□ -0.34
SMC6-209ENST00000489535 SYNJ1O43426 1573 aa12.92□□□□□ -0.34
SMC6-209ENST00000489535 AAASQ9NRG9 546 aa12.92□□□□□ -0.34
SMC6-209ENST00000489535 KIF21AQ7Z4S6 1674 aa12.92□□□□□ -0.34
SMC6-209ENST00000489535 CADPSQ9ULU8 1353 aa12.91□□□□□ -0.34
SMC6-209ENST00000489535 ACTN4O43707 911 aaKnown RBP12.9□□□□□ -0.34
SMC6-209ENST00000489535 NESP48681 1621 aa12.89□□□□□ -0.35
SMC6-209ENST00000489535 PLA2G2CQ5R387 149 aa12.89□□□□□ -0.35
SMC6-209ENST00000489535 DNAJB2P25686 324 aa12.88□□□□□ -0.35
SMC6-209ENST00000489535 TOP2BQ02880 1626 aa12.88□□□□□ -0.35
SMC6-209ENST00000489535 WRNQ14191 1432 aaPredicted RBP eCLIP12.88□□□□□ -0.35
SMC6-209ENST00000489535 ADH1BP00325 375 aa12.87□□□□□ -0.35
SMC6-209ENST00000489535 TMEM134Q9H6X4 195 aa12.87□□□□□ -0.35
SMC6-209ENST00000489535 WDR70Q9NW82 654 aa12.87□□□□□ -0.35
SMC6-209ENST00000489535 LOC100996750A0A140TA64 210 aa12.85□□□□□ -0.35
SMC6-209ENST00000489535 KMT5BQ4FZB7 885 aa12.85□□□□□ -0.35
SMC6-209ENST00000489535 KRTAP4-6Q9BYQ5 205 aa12.85□□□□□ -0.35
SMC6-209ENST00000489535 CFHP08603 1231 aa12.83□□□□□ -0.36
SMC6-209ENST00000489535 SPRYD3Q8NCJ5 442 aa12.83□□□□□ -0.36
SMC6-209ENST00000489535 PKD2L1Q9P0L9 805 aa12.83□□□□□ -0.36
SMC6-209ENST00000489535 FANCD2Q9BXW9 1451 aa12.82□□□□□ -0.36
SMC6-209ENST00000489535 CRIPAKQ8N1N5 446 aa12.81□□□□□ -0.36
SMC6-209ENST00000489535 SLC6A16Q9GZN6 736 aa12.81□□□□□ -0.36
SMC6-209ENST00000489535 CUX1P39880 1505 aa12.81□□□□□ -0.36
SMC6-209ENST00000489535 RBM46Q8TBY0 533 aaKnown RBP12.8□□□□□ -0.36
SMC6-209ENST00000489535 ADGRG1Q9Y653 693 aa12.8□□□□□ -0.36
SMC6-209ENST00000489535 NR1I2O75469 434 aa12.79□□□□□ -0.36
SMC6-209ENST00000489535 SLC10A3P09131 477 aa12.79□□□□□ -0.36
SMC6-209ENST00000489535 PTGDRQ13258 359 aa12.79□□□□□ -0.36
SMC6-209ENST00000489535 DACH1Q9UI36 760 aa12.79□□□□□ -0.36
SMC6-209ENST00000489535 RCCD1A6NED2 376 aa12.78□□□□□ -0.36
SMC6-209ENST00000489535 LMOD2Q6P5Q4 547 aa12.78□□□□□ -0.36
SMC6-209ENST00000489535 CEP164Q9UPV0 1460 aa12.77□□□□□ -0.37
SMC6-209ENST00000489535 DNMBPQ6XZF7 1577 aa12.77□□□□□ -0.37
SMC6-209ENST00000489535 FOXC1Q12948 553 aa12.76□□□□□ -0.37
SMC6-209ENST00000489535 AVPP01185 164 aa12.75□□□□□ -0.37
SMC6-209ENST00000489535 PDS5BQ9NTI5 1447 aa12.74□□□□□ -0.37
SMC6-209ENST00000489535 WFS1O76024 890 aa12.74□□□□□ -0.37
SMC6-209ENST00000489535 MLLT3P42568 568 aaPredicted RBP12.74□□□□□ -0.37
SMC6-209ENST00000489535 SCUBE3Q8IX30 993 aa12.74□□□□□ -0.37
SMC6-209ENST00000489535 FAM161AQ3B820 660 aa12.73□□□□□ -0.37
SMC6-209ENST00000489535 GMPR2Q9P2T1 348 aaKnown RBP12.73□□□□□ -0.37
SMC6-209ENST00000489535 TOR4AQ9NXH8 423 aa12.72□□□□□ -0.37
SMC6-209ENST00000489535 NFX1Q12986 1120 aaKnown RBP12.7□□□□□ -0.38
SMC6-209ENST00000489535 TOPBP1Q92547 1522 aa12.7□□□□□ -0.38
SMC6-209ENST00000489535 RPIAP49247 311 aa12.69□□□□□ -0.38
SMC6-209ENST00000489535 FAM9AQ8IZU1 332 aaPredicted RBP12.69□□□□□ -0.38
SMC6-209ENST00000489535 SPSB2Q99619 263 aa12.69□□□□□ -0.38
SMC6-209ENST00000489535 WDR97A6NE52 1622 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms