RNA–Protein interactions for RNA: ENST00000489535.2

SMC6-209, Transcript of structural maintenance of chromosomes 6, humanhuman

TSL 2

Gene SMC6, Length 550 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-209ENST00000489535 AEBP2Q6ZN18 517 aaPredicted RBP35.65■■■■□ 3.3
SMC6-209ENST00000489535 CHIC1Q5VXU3 224 aa33.32■■■□□ 2.92
SMC6-209ENST00000489535 SENP3Q9H4L4 574 aaPredicted RBP30.42■■■□□ 2.46
SMC6-209ENST00000489535 PHF23Q9BUL5 403 aaPredicted RBP29.97■■■□□ 2.39
SMC6-209ENST00000489535 FOXD1Q16676 465 aa28.45■■■□□ 2.14
SMC6-209ENST00000489535 POTEDQ86YR6 584 aa27.96■■■□□ 2.07
SMC6-209ENST00000489535 MSH5O43196 834 aa26.78■■□□□ 1.88
SMC6-209ENST00000489535 PIAS4Q8N2W9 510 aaPredicted RBP26.43■■□□□ 1.82
SMC6-209ENST00000489535 PLPPR3Q6T4P5 718 aa26.35■■□□□ 1.81
SMC6-209ENST00000489535 PPP6R1Q9UPN7 881 aa26.23■■□□□ 1.79
SMC6-209ENST00000489535 ADRA2BP18089 450 aa26.09■■□□□ 1.77
SMC6-209ENST00000489535 MAPK8IP2Q13387 824 aaPredicted RBP24.13■■□□□ 1.45
SMC6-209ENST00000489535 DMRT2Q9Y5R5 561 aa24.07■■□□□ 1.44
SMC6-209ENST00000489535 SCAF1Q9H7N4 1312 aaKnown RBP23.8■■□□□ 1.4
SMC6-209ENST00000489535 CACNB1Q02641 598 aaPredicted RBP23.46■■□□□ 1.35
SMC6-209ENST00000489535 PPP4R3CPQ6ZMV5 832 aa23.05■■□□□ 1.28
SMC6-209ENST00000489535 DCAF8L1A6NGE4 600 aa23.04■■□□□ 1.28
SMC6-209ENST00000489535 HOXD11P31277 338 aaPredicted RBP22.99■■□□□ 1.27
SMC6-209ENST00000489535 RNF39Q9H2S5 420 aa22.84■■□□□ 1.25
SMC6-209ENST00000489535 CNKSR2Q8WXI2 1034 aa22.72■■□□□ 1.23
SMC6-209ENST00000489535 RNF216Q9NWF9 866 aaPredicted RBP22.66■■□□□ 1.22
SMC6-209ENST00000489535 C1QBPQ07021 282 aaKnown RBP22.44■■□□□ 1.18
SMC6-209ENST00000489535 DNAJC5BQ9UF47 199 aa22.29■■□□□ 1.16
SMC6-209ENST00000489535 NCBP3Q53F19 620 aaKnown RBP21.95■■□□□ 1.1
SMC6-209ENST00000489535 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.84■■□□□ 1.09
SMC6-209ENST00000489535 NPM3O75607 178 aaKnown RBP21.71■■□□□ 1.07
SMC6-209ENST00000489535 POTEHQ6S545 545 aa21.67■■□□□ 1.06
SMC6-209ENST00000489535 U3KPZ7 1027 aaPredicted RBP21.4■■□□□ 1.02
SMC6-209ENST00000489535 SPINK5Q9NQ38 1064 aaPredicted RBP21.23■□□□□ 0.99
SMC6-209ENST00000489535 DSG3P32926 999 aa21.22■□□□□ 0.99
SMC6-209ENST00000489535 CAPN15O75808 1086 aa21.16■□□□□ 0.98
SMC6-209ENST00000489535 SLC4A2P04920 1241 aa20.89■□□□□ 0.93
SMC6-209ENST00000489535 KCNA4P22459 653 aa20.84■□□□□ 0.93
SMC6-209ENST00000489535 TRHP20396 242 aaPredicted RBP20.71■□□□□ 0.91
SMC6-209ENST00000489535 ABCB7O75027 752 aa20.65■□□□□ 0.9
SMC6-209ENST00000489535 ZNF219Q9P2Y4 722 aaPredicted RBP20.65■□□□□ 0.9
SMC6-209ENST00000489535 APLP2Q06481 763 aa20.64■□□□□ 0.89
SMC6-209ENST00000489535 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.53■□□□□ 0.88
SMC6-209ENST00000489535 HNRNPUL2Q1KMD3 747 aaKnown RBP20.53■□□□□ 0.88
SMC6-209ENST00000489535 SAMD1Q6SPF0 538 aaPredicted RBP20.41■□□□□ 0.86
SMC6-209ENST00000489535 RBM42Q9BTD8 480 aaKnown RBP20.2■□□□□ 0.82
SMC6-209ENST00000489535 MYCNP04198 464 aaPredicted RBP20.06■□□□□ 0.8
SMC6-209ENST00000489535 POLA2Q14181 598 aa20.05■□□□□ 0.8
SMC6-209ENST00000489535 CHRDL2Q6WN34 429 aa19.99■□□□□ 0.79
SMC6-209ENST00000489535 SP7Q8TDD2 431 aaPredicted RBP19.73■□□□□ 0.75
SMC6-209ENST00000489535 ATF5Q9Y2D1 282 aaPredicted RBP19.7■□□□□ 0.74
SMC6-209ENST00000489535 AKT1S1Q96B36 256 aa19.65■□□□□ 0.74
SMC6-209ENST00000489535 FOXD4L1Q9NU39 408 aa19.59■□□□□ 0.73
SMC6-209ENST00000489535 ZBTB12Q9Y330 459 aaPredicted RBP19.56■□□□□ 0.72
SMC6-209ENST00000489535 SLC4A1APQ9BWU0 796 aaKnown RBP19.53■□□□□ 0.72
SMC6-209ENST00000489535 REM2Q8IYK8 340 aaPredicted RBP19.48■□□□□ 0.71
SMC6-209ENST00000489535 OSCARQ8IYS5 282 aa19.45■□□□□ 0.7
SMC6-209ENST00000489535 PIP4P2Q8N4L2 257 aa19.42■□□□□ 0.7
SMC6-209ENST00000489535 PITPNM1O00562 1244 aa19.29■□□□□ 0.68
SMC6-209ENST00000489535 FXR2P51116 673 aaKnown RBP eCLIP19.23■□□□□ 0.67
SMC6-209ENST00000489535 ZBTB22O15209 634 aa19.19■□□□□ 0.66
SMC6-209ENST00000489535 HAX1O00165 279 aa19.16■□□□□ 0.66
SMC6-209ENST00000489535 ATXN8OSP0DMR3 200 aa19.02■□□□□ 0.64
SMC6-209ENST00000489535 EVX2Q03828 476 aa18.97■□□□□ 0.63
SMC6-209ENST00000489535 SPDYE2BA6NHP3 402 aa18.95■□□□□ 0.62
SMC6-209ENST00000489535 SPDYE6P0CI01 402 aa18.95■□□□□ 0.62
SMC6-209ENST00000489535 SPDYE2Q495Y8 402 aa18.95■□□□□ 0.62
SMC6-209ENST00000489535 FBLN2P98095 1184 aa18.87■□□□□ 0.61
SMC6-209ENST00000489535 PRKAR2AP13861 404 aaKnown RBP18.76■□□□□ 0.59
SMC6-209ENST00000489535 MKRN4PQ13434 485 aaPredicted RBP18.76■□□□□ 0.59
SMC6-209ENST00000489535 SPDYE1Q8NFV5 336 aaPredicted RBP18.74■□□□□ 0.59
SMC6-209ENST00000489535 CLEC11AQ9Y240 323 aa18.72■□□□□ 0.59
SMC6-209ENST00000489535 SSUH2Q9Y2M2 353 aa18.68■□□□□ 0.58
SMC6-209ENST00000489535 C19orf67A6NJJ6 358 aa18.64■□□□□ 0.57
SMC6-209ENST00000489535 ZNF692Q9BU19 519 aaPredicted RBP18.62■□□□□ 0.57
SMC6-209ENST00000489535 GABBR2O75899 941 aa18.48■□□□□ 0.55
SMC6-209ENST00000489535 LHX8Q68G74 356 aa18.47■□□□□ 0.55
SMC6-209ENST00000489535 CHADLQ6NUI6 762 aa18.46■□□□□ 0.55
SMC6-209ENST00000489535 PABPN1Q86U42 306 aaKnown RBP eCLIP18.36■□□□□ 0.53
SMC6-209ENST00000489535 PRR29P0C7W0 189 aa18.34■□□□□ 0.53
SMC6-209ENST00000489535 PLSCR2Q9NRY7 297 aa18.31■□□□□ 0.52
SMC6-209ENST00000489535 CD44P16070 742 aaKnown RBP18.14■□□□□ 0.49
SMC6-209ENST00000489535 POTEIP0CG38 1075 aa18.13■□□□□ 0.49
SMC6-209ENST00000489535 FARP1Q9Y4F1 1045 aaPredicted RBP18.13■□□□□ 0.49
SMC6-209ENST00000489535 CLCN6P51797 869 aa17.96■□□□□ 0.47
SMC6-209ENST00000489535 ZNF579Q8NAF0 562 aaKnown RBP17.86■□□□□ 0.45
SMC6-209ENST00000489535 CSRNP3Q8WYN3 585 aa17.82■□□□□ 0.44
SMC6-209ENST00000489535 DCBLD2Q96PD2 775 aa17.82■□□□□ 0.44
SMC6-209ENST00000489535 CREBZFQ9NS37 354 aa17.82■□□□□ 0.44
SMC6-209ENST00000489535 ZRANB1Q9UGI0 708 aa17.8■□□□□ 0.44
SMC6-209ENST00000489535 NISCHQ9Y2I1 1504 aa17.71■□□□□ 0.43
SMC6-209ENST00000489535 STAG3Q9UJ98 1225 aa17.7■□□□□ 0.42
SMC6-209ENST00000489535 GALR2O43603 387 aaPredicted RBP17.68■□□□□ 0.42
SMC6-209ENST00000489535 SPDYE4A6NLX3 237 aa17.56■□□□□ 0.4
SMC6-209ENST00000489535 PHF12Q96QT6 1004 aa17.54■□□□□ 0.4
SMC6-209ENST00000489535 OTUD5Q96G74 571 aa17.53■□□□□ 0.4
SMC6-209ENST00000489535 POTEB2H3BUK9 544 aa17.52■□□□□ 0.4
SMC6-209ENST00000489535 PAK3O75914 559 aaPredicted RBP17.49■□□□□ 0.39
SMC6-209ENST00000489535 MNX1P50219 401 aaPredicted RBP17.47■□□□□ 0.39
SMC6-209ENST00000489535 POTEMA6NI47 508 aa17.46■□□□□ 0.39
SMC6-209ENST00000489535 PELP1Q8IZL8 1130 aaKnown RBP17.41■□□□□ 0.38
SMC6-209ENST00000489535 NPM1P06748 294 aaKnown RBP eCLIP17.4■□□□□ 0.38
SMC6-209ENST00000489535 POTEGQ6S5H5 508 aa17.37■□□□□ 0.37
SMC6-209ENST00000489535 MS4A3Q96HJ5 214 aa17.29■□□□□ 0.36
SMC6-209ENST00000489535 PCDH10Q9P2E7 1040 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms