RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.3■■□□□ 1.16
TRIM54-204ENST00000488321 CPS1P31327 1500 aa22.3■■□□□ 1.16
TRIM54-204ENST00000488321 ZFYVE9O95405 1425 aa22.3■■□□□ 1.16
TRIM54-204ENST00000488321 ZNF326Q5BKZ1 582 aaKnown RBP22.29■■□□□ 1.16
TRIM54-204ENST00000488321 FOXD1Q16676 465 aa22.28■■□□□ 1.16
TRIM54-204ENST00000488321 MPHOSPH9Q99550 1183 aa22.28■■□□□ 1.16
TRIM54-204ENST00000488321 TRPM2O94759 1503 aa22.26■■□□□ 1.15
TRIM54-204ENST00000488321 SPHKAPQ2M3C7 1700 aa22.26■■□□□ 1.15
TRIM54-204ENST00000488321 UBAP1LF5GYI3 381 aa22.26■■□□□ 1.15
TRIM54-204ENST00000488321 ACIN1Q9UKV3 1341 aaKnown RBP22.26■■□□□ 1.15
TRIM54-204ENST00000488321 RAB3GAP2Q9H2M9 1393 aa22.25■■□□□ 1.15
TRIM54-204ENST00000488321 PLEKHG1Q9ULL1 1385 aa22.25■■□□□ 1.15
TRIM54-204ENST00000488321 CLTCL1P53675 1640 aa22.2■■□□□ 1.15
TRIM54-204ENST00000488321 KCNA6P17658 529 aa22.19■■□□□ 1.14
TRIM54-204ENST00000488321 LRRC7Q96NW7 1537 aa22.18■■□□□ 1.14
TRIM54-204ENST00000488321 MYO5BQ9ULV0 1848 aa22.17■■□□□ 1.14
TRIM54-204ENST00000488321 SCAF1Q9H7N4 1312 aaKnown RBP22.17■■□□□ 1.14
TRIM54-204ENST00000488321 TBX22Q9Y458 520 aa22.17■■□□□ 1.14
TRIM54-204ENST00000488321 CCDC144AA2RUR9 1427 aa22.16■■□□□ 1.14
TRIM54-204ENST00000488321 TOM1O60784 492 aa22.16■■□□□ 1.14
TRIM54-204ENST00000488321 PIP4K2BP78356 416 aa22.14■■□□□ 1.13
TRIM54-204ENST00000488321 PROSER2Q86WR7 435 aaPredicted RBP22.14■■□□□ 1.13
TRIM54-204ENST00000488321 ADAMTS13Q76LX8 1427 aa22.13■■□□□ 1.13
TRIM54-204ENST00000488321 STRCP1A6NGW2 1772 aa22.12■■□□□ 1.13
TRIM54-204ENST00000488321 RBM33Q96EV2 1170 aaKnown RBP22.12■■□□□ 1.13
TRIM54-204ENST00000488321 TMEM94Q12767 1356 aa22.11■■□□□ 1.13
TRIM54-204ENST00000488321 RGL3Q3MIN7 710 aa22.1■■□□□ 1.13
TRIM54-204ENST00000488321 VGFO15240 615 aaPredicted RBP22.09■■□□□ 1.13
TRIM54-204ENST00000488321 HRCP23327 699 aa22.09■■□□□ 1.13
TRIM54-204ENST00000488321 NEXMIFQ5QGS0 1516 aa22.09■■□□□ 1.13
TRIM54-204ENST00000488321 RPGRIP1LQ68CZ1 1315 aa22.08■■□□□ 1.13
TRIM54-204ENST00000488321 NKTRP30414 1462 aaKnown RBP22.07■■□□□ 1.12
TRIM54-204ENST00000488321 DIP2AQ14689 1571 aa22.07■■□□□ 1.12
TRIM54-204ENST00000488321 PIK3R4Q99570 1358 aa22.06■■□□□ 1.12
TRIM54-204ENST00000488321 NWD1Q149M9 1564 aa22.05■■□□□ 1.12
TRIM54-204ENST00000488321 KIF1BO60333 1816 aa22.05■■□□□ 1.12
TRIM54-204ENST00000488321 AMOTL2Q9Y2J4 779 aa22.04■■□□□ 1.12
TRIM54-204ENST00000488321 SETBP1Q9Y6X0 1596 aa22.04■■□□□ 1.12
TRIM54-204ENST00000488321 C14orf37Q86TY3 774 aa22.03■■□□□ 1.12
TRIM54-204ENST00000488321 SPATA31E1Q6ZUB1 1445 aa22.02■■□□□ 1.12
TRIM54-204ENST00000488321 METP08581 1390 aa22.01■■□□□ 1.11
TRIM54-204ENST00000488321 PTPRUQ92729 1446 aa22■■□□□ 1.11
TRIM54-204ENST00000488321 MSH6P52701 1360 aa21.99■■□□□ 1.11
TRIM54-204ENST00000488321 NRXN3Q9Y4C0 1643 aa21.98■■□□□ 1.11
TRIM54-204ENST00000488321 HSPA1LP34931 641 aa21.97■■□□□ 1.11
TRIM54-204ENST00000488321 ALKQ9UM73 1620 aa21.97■■□□□ 1.11
TRIM54-204ENST00000488321 ADGRF5Q8IZF2 1346 aa21.97■■□□□ 1.11
TRIM54-204ENST00000488321 ANKRD30BQ9BXX2 1392 aa21.97■■□□□ 1.11
TRIM54-204ENST00000488321 CHD2O14647 1828 aaKnown RBP21.94■■□□□ 1.1
TRIM54-204ENST00000488321 NCOA3Q9Y6Q9 1424 aa21.93■■□□□ 1.1
TRIM54-204ENST00000488321 XIRP1Q702N8 1843 aaKnown RBP21.91■■□□□ 1.1
TRIM54-204ENST00000488321 ATF3P18847 181 aa21.9■■□□□ 1.1
TRIM54-204ENST00000488321 C19orf44Q9H6X5 657 aa21.9■■□□□ 1.1
TRIM54-204ENST00000488321 PPLO60437 1756 aa21.89■■□□□ 1.1
TRIM54-204ENST00000488321 SLAIN2Q9P270 581 aa21.89■■□□□ 1.09
TRIM54-204ENST00000488321 XRN1Q8IZH2 1706 aaKnown RBP21.87■■□□□ 1.09
TRIM54-204ENST00000488321 CADPS2Q86UW7 1296 aa21.87■■□□□ 1.09
TRIM54-204ENST00000488321 TRIM26Q12899 539 aaPredicted RBP21.86■■□□□ 1.09
TRIM54-204ENST00000488321 PIK3C2GO75747 1445 aa21.86■■□□□ 1.09
TRIM54-204ENST00000488321 FAM135BQ49AJ0 1406 aa21.86■■□□□ 1.09
TRIM54-204ENST00000488321 STK26Q9P289 416 aa21.85■■□□□ 1.09
TRIM54-204ENST00000488321 TMEM132EQ6IEE7 984 aa21.84■■□□□ 1.09
TRIM54-204ENST00000488321 KDM2AQ9Y2K7 1162 aa21.84■■□□□ 1.09
TRIM54-204ENST00000488321 ROBO2Q9HCK4 1378 aa21.84■■□□□ 1.09
TRIM54-204ENST00000488321 DCAF11Q8TEB1 546 aa21.83■■□□□ 1.09
TRIM54-204ENST00000488321 PTCH1Q13635 1447 aa21.82■■□□□ 1.08
TRIM54-204ENST00000488321 MYOM2P54296 1465 aa21.82■■□□□ 1.08
TRIM54-204ENST00000488321 CFAP70Q5T0N1 1121 aa21.81■■□□□ 1.08
TRIM54-204ENST00000488321 C14orf93Q9H972 538 aaKnown RBP21.81■■□□□ 1.08
TRIM54-204ENST00000488321 IFT172Q9UG01 1749 aa21.8■■□□□ 1.08
TRIM54-204ENST00000488321 SETD1AO15047 1707 aaKnown RBP21.8■■□□□ 1.08
TRIM54-204ENST00000488321 ADGRL3Q9HAR2 1447 aa21.8■■□□□ 1.08
TRIM54-204ENST00000488321 DISP3Q9P2K9 1392 aa21.79■■□□□ 1.08
TRIM54-204ENST00000488321 DCCP43146 1447 aa21.79■■□□□ 1.08
TRIM54-204ENST00000488321 NRXN1Q9ULB1 1477 aa21.78■■□□□ 1.08
TRIM54-204ENST00000488321 LRPPRCP42704 1394 aaKnown RBP21.78■■□□□ 1.08
TRIM54-204ENST00000488321 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.77■■□□□ 1.08
TRIM54-204ENST00000488321 ROBO1Q9Y6N7 1651 aa21.76■■□□□ 1.07
TRIM54-204ENST00000488321 PRAG1Q86YV5 1406 aa21.76■■□□□ 1.07
TRIM54-204ENST00000488321 DHX57Q6P158 1386 aaKnown RBP21.75■■□□□ 1.07
TRIM54-204ENST00000488321 STAC3Q96MF2 364 aa21.75■■□□□ 1.07
TRIM54-204ENST00000488321 ASXL1Q8IXJ9 1541 aa21.75■■□□□ 1.07
TRIM54-204ENST00000488321 ABCC11Q96J66 1382 aa21.74■■□□□ 1.07
TRIM54-204ENST00000488321 YTHDC2Q9H6S0 1430 aaKnown RBP21.74■■□□□ 1.07
TRIM54-204ENST00000488321 WAPLQ7Z5K2 1190 aa21.74■■□□□ 1.07
TRIM54-204ENST00000488321 MST1RQ04912 1400 aa21.72■■□□□ 1.07
TRIM54-204ENST00000488321 BRINP3Q76B58 766 aa21.72■■□□□ 1.07
TRIM54-204ENST00000488321 TECPR2O15040 1411 aa21.72■■□□□ 1.07
TRIM54-204ENST00000488321 PLEKHH1Q9ULM0 1364 aa21.7■■□□□ 1.06
TRIM54-204ENST00000488321 NEUROD1Q13562 356 aa21.69■■□□□ 1.06
TRIM54-204ENST00000488321 SIN3AQ96ST3 1273 aa21.69■■□□□ 1.06
TRIM54-204ENST00000488321 NALCNQ8IZF0 1738 aa21.69■■□□□ 1.06
TRIM54-204ENST00000488321 LAMC1P11047 1609 aa21.68■■□□□ 1.06
TRIM54-204ENST00000488321 SAFB2Q14151 953 aaKnown RBP eCLIP21.66■■□□□ 1.06
TRIM54-204ENST00000488321 SIRT1Q96EB6 747 aa21.66■■□□□ 1.06
TRIM54-204ENST00000488321 PRAM1Q96QH2 718 aa21.66■■□□□ 1.06
TRIM54-204ENST00000488321 POGKQ9P215 609 aa21.66■■□□□ 1.06
TRIM54-204ENST00000488321 TRAK1Q9UPV9 953 aa21.66■■□□□ 1.06
TRIM54-204ENST00000488321 C1orf167Q5SNV9 1468 aa21.65■■□□□ 1.06
TRIM54-204ENST00000488321 MED1Q15648 1581 aaPredicted RBP21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms