RNA–Protein interactions for RNA: ENST00000483631.1

HPS4-213, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 737 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-213ENST00000483631 PIP4K2BP78356 416 aa30.18■■■□□ 2.42
HPS4-213ENST00000483631 KCNA6P17658 529 aa30.17■■■□□ 2.42
HPS4-213ENST00000483631 SCAF1Q9H7N4 1312 aaKnown RBP30.17■■■□□ 2.42
HPS4-213ENST00000483631 PLEKHG1Q9ULL1 1385 aa30.16■■■□□ 2.42
HPS4-213ENST00000483631 RIMS2Q9UQ26 1411 aa30.16■■■□□ 2.42
HPS4-213ENST00000483631 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.14■■■□□ 2.42
HPS4-213ENST00000483631 NWD1Q149M9 1564 aa30.14■■■□□ 2.42
HPS4-213ENST00000483631 NKTRP30414 1462 aaKnown RBP30.12■■■□□ 2.41
HPS4-213ENST00000483631 HSPA1LP34931 641 aa30.12■■■□□ 2.41
HPS4-213ENST00000483631 SLC26A8Q96RN1 970 aa30.12■■■□□ 2.41
HPS4-213ENST00000483631 NAIPQ13075 1403 aa30.11■■■□□ 2.41
HPS4-213ENST00000483631 SPHKAPQ2M3C7 1700 aa30.1■■■□□ 2.41
HPS4-213ENST00000483631 PPP1R15AO75807 674 aaPredicted RBP30.09■■■□□ 2.41
HPS4-213ENST00000483631 CHD2O14647 1828 aaKnown RBP30.07■■■□□ 2.4
HPS4-213ENST00000483631 BCANQ96GW7 911 aa30.06■■■□□ 2.4
HPS4-213ENST00000483631 TMEM94Q12767 1356 aa30.05■■■□□ 2.4
HPS4-213ENST00000483631 CHGAP10645 457 aaKnown RBP30.05■■■□□ 2.4
HPS4-213ENST00000483631 TBX22Q9Y458 520 aa30.05■■■□□ 2.4
HPS4-213ENST00000483631 DIP2AQ14689 1571 aa30.05■■■□□ 2.4
HPS4-213ENST00000483631 HFM1A2PYH4 1435 aa30.05■■■□□ 2.4
HPS4-213ENST00000483631 PROSER2Q86WR7 435 aaPredicted RBP30.01■■■□□ 2.39
HPS4-213ENST00000483631 PIK3R4Q99570 1358 aa30■■■□□ 2.39
HPS4-213ENST00000483631 ADAMTS13Q76LX8 1427 aa29.98■■■□□ 2.39
HPS4-213ENST00000483631 FAM135BQ49AJ0 1406 aa29.97■■■□□ 2.39
HPS4-213ENST00000483631 TRPM2O94759 1503 aa29.97■■■□□ 2.39
HPS4-213ENST00000483631 NCOA3Q9Y6Q9 1424 aa29.96■■■□□ 2.39
HPS4-213ENST00000483631 MED1Q15648 1581 aaPredicted RBP29.94■■■□□ 2.38
HPS4-213ENST00000483631 MSH6P52701 1360 aa29.92■■■□□ 2.38
HPS4-213ENST00000483631 CLTCL1P53675 1640 aa29.91■■■□□ 2.38
HPS4-213ENST00000483631 KIF1BO60333 1816 aa29.9■■■□□ 2.38
HPS4-213ENST00000483631 SETBP1Q9Y6X0 1596 aa29.9■■■□□ 2.38
HPS4-213ENST00000483631 NUTM2DQ5VT03 806 aaPredicted RBP29.88■■■□□ 2.37
HPS4-213ENST00000483631 NRXN3Q9Y4C0 1643 aa29.85■■■□□ 2.37
HPS4-213ENST00000483631 TRIM52Q96A61 297 aa29.85■■■□□ 2.37
HPS4-213ENST00000483631 SENP3Q9H4L4 574 aaPredicted RBP29.85■■■□□ 2.37
HPS4-213ENST00000483631 ROBO1Q9Y6N7 1651 aa29.85■■■□□ 2.37
HPS4-213ENST00000483631 ZNF326Q5BKZ1 582 aaKnown RBP29.84■■■□□ 2.37
HPS4-213ENST00000483631 RBM33Q96EV2 1170 aaKnown RBP29.84■■■□□ 2.37
HPS4-213ENST00000483631 NEXMIFQ5QGS0 1516 aa29.83■■■□□ 2.37
HPS4-213ENST00000483631 SLC4A1APQ9BWU0 796 aaKnown RBP29.81■■■□□ 2.36
HPS4-213ENST00000483631 SLAIN2Q9P270 581 aa29.78■■■□□ 2.36
HPS4-213ENST00000483631 XRN1Q8IZH2 1706 aaKnown RBP29.78■■■□□ 2.36
HPS4-213ENST00000483631 ACIN1Q9UKV3 1341 aaKnown RBP29.77■■■□□ 2.36
HPS4-213ENST00000483631 AMOTL2Q9Y2J4 779 aa29.77■■■□□ 2.36
HPS4-213ENST00000483631 PTPRUQ92729 1446 aa29.77■■■□□ 2.36
HPS4-213ENST00000483631 C19orf44Q9H6X5 657 aa29.75■■■□□ 2.35
HPS4-213ENST00000483631 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.75■■■□□ 2.35
HPS4-213ENST00000483631 CADPS2Q86UW7 1296 aa29.74■■■□□ 2.35
HPS4-213ENST00000483631 RPGRIP1LQ68CZ1 1315 aa29.73■■■□□ 2.35
HPS4-213ENST00000483631 VGFO15240 615 aaPredicted RBP29.71■■■□□ 2.35
HPS4-213ENST00000483631 C14orf37Q86TY3 774 aa29.71■■■□□ 2.35
HPS4-213ENST00000483631 DCCP43146 1447 aa29.71■■■□□ 2.35
HPS4-213ENST00000483631 PHF23Q9BUL5 403 aaPredicted RBP29.69■■■□□ 2.34
HPS4-213ENST00000483631 METP08581 1390 aa29.68■■■□□ 2.34
HPS4-213ENST00000483631 ATF3P18847 181 aa29.67■■■□□ 2.34
HPS4-213ENST00000483631 PHLPP1O60346 1717 aa29.67■■■□□ 2.34
HPS4-213ENST00000483631 PPLO60437 1756 aa29.66■■■□□ 2.34
HPS4-213ENST00000483631 SETD1AO15047 1707 aaKnown RBP29.64■■■□□ 2.34
HPS4-213ENST00000483631 MPHOSPH9Q99550 1183 aa29.62■■■□□ 2.33
HPS4-213ENST00000483631 CCDC144AA2RUR9 1427 aa29.62■■■□□ 2.33
HPS4-213ENST00000483631 PRAG1Q86YV5 1406 aa29.61■■■□□ 2.33
HPS4-213ENST00000483631 AHDC1Q5TGY3 1603 aaPredicted RBP29.6■■■□□ 2.33
HPS4-213ENST00000483631 COL16A1Q07092 1604 aaPredicted RBP29.6■■■□□ 2.33
HPS4-213ENST00000483631 JCADQ9P266 1359 aa29.59■■■□□ 2.33
HPS4-213ENST00000483631 PTCH1Q13635 1447 aa29.58■■■□□ 2.33
HPS4-213ENST00000483631 SETD5Q9C0A6 1442 aa29.58■■■□□ 2.33
HPS4-213ENST00000483631 ADGRL3Q9HAR2 1447 aa29.58■■■□□ 2.33
HPS4-213ENST00000483631 FOXD1Q16676 465 aa29.56■■■□□ 2.32
HPS4-213ENST00000483631 SPATA31E1Q6ZUB1 1445 aa29.55■■■□□ 2.32
HPS4-213ENST00000483631 MST1RQ04912 1400 aa29.53■■■□□ 2.32
HPS4-213ENST00000483631 NALCNQ8IZF0 1738 aa29.52■■■□□ 2.32
HPS4-213ENST00000483631 IFT172Q9UG01 1749 aa29.52■■■□□ 2.32
HPS4-213ENST00000483631 ANKRD30BQ9BXX2 1392 aa29.52■■■□□ 2.32
HPS4-213ENST00000483631 BRINP3Q76B58 766 aa29.5■■■□□ 2.31
HPS4-213ENST00000483631 RGS17Q9UGC6 210 aaPredicted RBP29.49■■■□□ 2.31
HPS4-213ENST00000483631 ASXL1Q8IXJ9 1541 aa29.48■■■□□ 2.31
HPS4-213ENST00000483631 SHPRHQ149N8 1683 aa29.47■■■□□ 2.31
HPS4-213ENST00000483631 SPATA31A6Q5VVP1 1343 aa29.46■■■□□ 2.31
HPS4-213ENST00000483631 NHSL1Q5SYE7 1610 aa29.45■■■□□ 2.31
HPS4-213ENST00000483631 ROBO2Q9HCK4 1378 aa29.45■■■□□ 2.31
HPS4-213ENST00000483631 RAB3GAP2Q9H2M9 1393 aa29.44■■■□□ 2.3
HPS4-213ENST00000483631 RGL3Q3MIN7 710 aa29.42■■■□□ 2.3
HPS4-213ENST00000483631 ADGRF5Q8IZF2 1346 aa29.42■■■□□ 2.3
HPS4-213ENST00000483631 TECPR2O15040 1411 aa29.39■■■□□ 2.3
HPS4-213ENST00000483631 PIK3C2GO75747 1445 aa29.39■■■□□ 2.3
HPS4-213ENST00000483631 C1orf167Q5SNV9 1468 aa29.37■■■□□ 2.29
HPS4-213ENST00000483631 HRCP23327 699 aa29.37■■■□□ 2.29
HPS4-213ENST00000483631 LAMC1P11047 1609 aa29.37■■■□□ 2.29
HPS4-213ENST00000483631 KNDC1Q76NI1 1749 aa29.36■■■□□ 2.29
HPS4-213ENST00000483631 LRPPRCP42704 1394 aaKnown RBP29.34■■■□□ 2.29
HPS4-213ENST00000483631 LRP6O75581 1613 aa29.34■■■□□ 2.29
HPS4-213ENST00000483631 LRRC59Q96AG4 307 aaKnown RBP29.33■■■□□ 2.29
HPS4-213ENST00000483631 ABCC11Q96J66 1382 aa29.33■■■□□ 2.29
HPS4-213ENST00000483631 MYOM2P54296 1465 aa29.33■■■□□ 2.29
HPS4-213ENST00000483631 NRXN1Q9ULB1 1477 aa29.33■■■□□ 2.29
HPS4-213ENST00000483631 CDC42BPGQ6DT37 1551 aa29.33■■■□□ 2.29
HPS4-213ENST00000483631 POTEAQ6S8J7 498 aa29.32■■■□□ 2.28
HPS4-213ENST00000483631 SIRT1Q96EB6 747 aa29.26■■■□□ 2.27
HPS4-213ENST00000483631 C14orf93Q9H972 538 aaKnown RBP29.26■■■□□ 2.27
HPS4-213ENST00000483631 MEX3CQ5U5Q3 659 aaKnown RBP29.25■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms