RNA–Protein interactions for RNA: ENST00000475482.5

CPSF3-203, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 4

Gene CPSF3, Length 871 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-203ENST00000475482 XIRP1Q702N8 1843 aaKnown RBP23.47■■□□□ 1.35
CPSF3-203ENST00000475482 TOM1O60784 492 aa23.46■■□□□ 1.35
CPSF3-203ENST00000475482 HDGFP51858 240 aaKnown RBP23.45■■□□□ 1.34
CPSF3-203ENST00000475482 PCGF6Q9BYE7 350 aa23.44■■□□□ 1.34
CPSF3-203ENST00000475482 KCNA6P17658 529 aa23.43■■□□□ 1.34
CPSF3-203ENST00000475482 SLC26A8Q96RN1 970 aa23.43■■□□□ 1.34
CPSF3-203ENST00000475482 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.42■■□□□ 1.34
CPSF3-203ENST00000475482 NWD1Q149M9 1564 aa23.42■■□□□ 1.34
CPSF3-203ENST00000475482 TRPM2O94759 1503 aa23.4■■□□□ 1.34
CPSF3-203ENST00000475482 CHD2O14647 1828 aaKnown RBP23.39■■□□□ 1.33
CPSF3-203ENST00000475482 CHGAP10645 457 aaKnown RBP23.39■■□□□ 1.33
CPSF3-203ENST00000475482 CLTCL1P53675 1640 aa23.37■■□□□ 1.33
CPSF3-203ENST00000475482 ADAMTS13Q76LX8 1427 aa23.37■■□□□ 1.33
CPSF3-203ENST00000475482 TBX22Q9Y458 520 aa23.37■■□□□ 1.33
CPSF3-203ENST00000475482 NKTRP30414 1462 aaKnown RBP23.36■■□□□ 1.33
CPSF3-203ENST00000475482 PPP1R15AO75807 674 aaPredicted RBP23.35■■□□□ 1.33
CPSF3-203ENST00000475482 PIP4K2BP78356 416 aa23.34■■□□□ 1.33
CPSF3-203ENST00000475482 TMEM94Q12767 1356 aa23.34■■□□□ 1.33
CPSF3-203ENST00000475482 DIP2AQ14689 1571 aa23.34■■□□□ 1.33
CPSF3-203ENST00000475482 TRIM52Q96A61 297 aa23.33■■□□□ 1.33
CPSF3-203ENST00000475482 BCANQ96GW7 911 aa23.32■■□□□ 1.32
CPSF3-203ENST00000475482 KIF1BO60333 1816 aa23.31■■□□□ 1.32
CPSF3-203ENST00000475482 PIK3R4Q99570 1358 aa23.31■■□□□ 1.32
CPSF3-203ENST00000475482 HSPA1LP34931 641 aa23.31■■□□□ 1.32
CPSF3-203ENST00000475482 NUTM2DQ5VT03 806 aaPredicted RBP23.31■■□□□ 1.32
CPSF3-203ENST00000475482 SLC4A1APQ9BWU0 796 aaKnown RBP23.3■■□□□ 1.32
CPSF3-203ENST00000475482 NRXN3Q9Y4C0 1643 aa23.3■■□□□ 1.32
CPSF3-203ENST00000475482 PROSER2Q86WR7 435 aaPredicted RBP23.29■■□□□ 1.32
CPSF3-203ENST00000475482 SCAF1Q9H7N4 1312 aaKnown RBP23.29■■□□□ 1.32
CPSF3-203ENST00000475482 NEXMIFQ5QGS0 1516 aa23.28■■□□□ 1.32
CPSF3-203ENST00000475482 SETBP1Q9Y6X0 1596 aa23.28■■□□□ 1.32
CPSF3-203ENST00000475482 SENP3Q9H4L4 574 aaPredicted RBP23.27■■□□□ 1.32
CPSF3-203ENST00000475482 NCOA3Q9Y6Q9 1424 aa23.25■■□□□ 1.31
CPSF3-203ENST00000475482 ZNF326Q5BKZ1 582 aaKnown RBP23.23■■□□□ 1.31
CPSF3-203ENST00000475482 RBM33Q96EV2 1170 aaKnown RBP23.23■■□□□ 1.31
CPSF3-203ENST00000475482 FAM135BQ49AJ0 1406 aa23.23■■□□□ 1.31
CPSF3-203ENST00000475482 ACIN1Q9UKV3 1341 aaKnown RBP23.22■■□□□ 1.31
CPSF3-203ENST00000475482 PTPRUQ92729 1446 aa23.22■■□□□ 1.31
CPSF3-203ENST00000475482 MPHOSPH9Q99550 1183 aa23.21■■□□□ 1.31
CPSF3-203ENST00000475482 DISP3Q9P2K9 1392 aa23.21■■□□□ 1.31
CPSF3-203ENST00000475482 SETD5Q9C0A6 1442 aa23.2■■□□□ 1.3
CPSF3-203ENST00000475482 XRN1Q8IZH2 1706 aaKnown RBP23.19■■□□□ 1.3
CPSF3-203ENST00000475482 MSH6P52701 1360 aa23.18■■□□□ 1.3
CPSF3-203ENST00000475482 RPGRIP1LQ68CZ1 1315 aa23.17■■□□□ 1.3
CPSF3-203ENST00000475482 FOXD1Q16676 465 aa23.17■■□□□ 1.3
CPSF3-203ENST00000475482 AMOTL2Q9Y2J4 779 aa23.17■■□□□ 1.3
CPSF3-203ENST00000475482 PPLO60437 1756 aa23.16■■□□□ 1.3
CPSF3-203ENST00000475482 METP08581 1390 aa23.15■■□□□ 1.3
CPSF3-203ENST00000475482 SETD1AO15047 1707 aaKnown RBP23.14■■□□□ 1.3
CPSF3-203ENST00000475482 ROBO1Q9Y6N7 1651 aa23.14■■□□□ 1.29
CPSF3-203ENST00000475482 VGFO15240 615 aaPredicted RBP23.14■■□□□ 1.29
CPSF3-203ENST00000475482 SPATA31E1Q6ZUB1 1445 aa23.13■■□□□ 1.29
CPSF3-203ENST00000475482 CCDC144AA2RUR9 1427 aa23.12■■□□□ 1.29
CPSF3-203ENST00000475482 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.12■■□□□ 1.29
CPSF3-203ENST00000475482 RAB3GAP2Q9H2M9 1393 aa23.12■■□□□ 1.29
CPSF3-203ENST00000475482 SLAIN2Q9P270 581 aa23.11■■□□□ 1.29
CPSF3-203ENST00000475482 MED1Q15648 1581 aaPredicted RBP23.1■■□□□ 1.29
CPSF3-203ENST00000475482 C19orf44Q9H6X5 657 aa23.1■■□□□ 1.29
CPSF3-203ENST00000475482 ILDR2Q71H61 639 aa23.09■■□□□ 1.29
CPSF3-203ENST00000475482 IFT172Q9UG01 1749 aa23.08■■□□□ 1.28
CPSF3-203ENST00000475482 PRAG1Q86YV5 1406 aa23.07■■□□□ 1.28
CPSF3-203ENST00000475482 DCCP43146 1447 aa23.06■■□□□ 1.28
CPSF3-203ENST00000475482 HRCP23327 699 aa23.05■■□□□ 1.28
CPSF3-203ENST00000475482 CADPS2Q86UW7 1296 aa23.05■■□□□ 1.28
CPSF3-203ENST00000475482 PTCH1Q13635 1447 aa23.02■■□□□ 1.28
CPSF3-203ENST00000475482 C14orf37Q86TY3 774 aa23.02■■□□□ 1.28
CPSF3-203ENST00000475482 ANKRD30BQ9BXX2 1392 aa23.01■■□□□ 1.27
CPSF3-203ENST00000475482 ADGRF5Q8IZF2 1346 aa23.01■■□□□ 1.27
CPSF3-203ENST00000475482 ATF3P18847 181 aa23■■□□□ 1.27
CPSF3-203ENST00000475482 ADGRL3Q9HAR2 1447 aa22.99■■□□□ 1.27
CPSF3-203ENST00000475482 RGL3Q3MIN7 710 aa22.99■■□□□ 1.27
CPSF3-203ENST00000475482 PHLPP1O60346 1717 aa22.98■■□□□ 1.27
CPSF3-203ENST00000475482 NALCNQ8IZF0 1738 aa22.98■■□□□ 1.27
CPSF3-203ENST00000475482 ROBO2Q9HCK4 1378 aa22.97■■□□□ 1.27
CPSF3-203ENST00000475482 COL16A1Q07092 1604 aaPredicted RBP22.97■■□□□ 1.27
CPSF3-203ENST00000475482 AHDC1Q5TGY3 1603 aaPredicted RBP22.97■■□□□ 1.27
CPSF3-203ENST00000475482 PIK3C2GO75747 1445 aa22.96■■□□□ 1.27
CPSF3-203ENST00000475482 MST1RQ04912 1400 aa22.96■■□□□ 1.27
CPSF3-203ENST00000475482 NRXN1Q9ULB1 1477 aa22.94■■□□□ 1.26
CPSF3-203ENST00000475482 BRINP3Q76B58 766 aa22.93■■□□□ 1.26
CPSF3-203ENST00000475482 ASXL1Q8IXJ9 1541 aa22.92■■□□□ 1.26
CPSF3-203ENST00000475482 TECPR2O15040 1411 aa22.91■■□□□ 1.26
CPSF3-203ENST00000475482 MYOM2P54296 1465 aa22.91■■□□□ 1.26
CPSF3-203ENST00000475482 JCADQ9P266 1359 aa22.89■■□□□ 1.26
CPSF3-203ENST00000475482 SOCS7O14512 581 aa22.89■■□□□ 1.25
CPSF3-203ENST00000475482 LRPPRCP42704 1394 aaKnown RBP22.89■■□□□ 1.25
CPSF3-203ENST00000475482 KNDC1Q76NI1 1749 aa22.88■■□□□ 1.25
CPSF3-203ENST00000475482 ABCC11Q96J66 1382 aa22.88■■□□□ 1.25
CPSF3-203ENST00000475482 NHSL1Q5SYE7 1610 aa22.87■■□□□ 1.25
CPSF3-203ENST00000475482 C14orf93Q9H972 538 aaKnown RBP22.87■■□□□ 1.25
CPSF3-203ENST00000475482 PHF23Q9BUL5 403 aaPredicted RBP22.85■■□□□ 1.25
CPSF3-203ENST00000475482 RGS17Q9UGC6 210 aaPredicted RBP22.85■■□□□ 1.25
CPSF3-203ENST00000475482 LAMC1P11047 1609 aa22.84■■□□□ 1.25
CPSF3-203ENST00000475482 C1orf167Q5SNV9 1468 aa22.84■■□□□ 1.25
CPSF3-203ENST00000475482 SHPRHQ149N8 1683 aa22.84■■□□□ 1.25
CPSF3-203ENST00000475482 YTHDC2Q9H6S0 1430 aaKnown RBP22.82■■□□□ 1.24
CPSF3-203ENST00000475482 TMEM132EQ6IEE7 984 aa22.82■■□□□ 1.24
CPSF3-203ENST00000475482 CDC42BPGQ6DT37 1551 aa22.81■■□□□ 1.24
CPSF3-203ENST00000475482 SIRT1Q96EB6 747 aa22.81■■□□□ 1.24
CPSF3-203ENST00000475482 SPATA31A6Q5VVP1 1343 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms