RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 SPHKAPQ2M3C7 1700 aa21.45■■□□□ 1.03
UPF3A-204ENST00000475218 NWD1Q149M9 1564 aa21.45■■□□□ 1.02
UPF3A-204ENST00000475218 PLEKHG1Q9ULL1 1385 aa21.45■■□□□ 1.02
UPF3A-204ENST00000475218 HFM1A2PYH4 1435 aa21.44■■□□□ 1.02
UPF3A-204ENST00000475218 SENP3Q9H4L4 574 aaPredicted RBP21.43■■□□□ 1.02
UPF3A-204ENST00000475218 HSPA1LP34931 641 aa21.43■■□□□ 1.02
UPF3A-204ENST00000475218 SCAF1Q9H7N4 1312 aaKnown RBP21.41■■□□□ 1.02
UPF3A-204ENST00000475218 KCNA6P17658 529 aa21.41■■□□□ 1.02
UPF3A-204ENST00000475218 CHGAP10645 457 aaKnown RBP21.41■■□□□ 1.02
UPF3A-204ENST00000475218 ADAMTS13Q76LX8 1427 aa21.4■■□□□ 1.02
UPF3A-204ENST00000475218 DISP3Q9P2K9 1392 aa21.39■■□□□ 1.02
UPF3A-204ENST00000475218 NUTM2DQ5VT03 806 aaPredicted RBP21.39■■□□□ 1.01
UPF3A-204ENST00000475218 CHD2O14647 1828 aaKnown RBP21.39■■□□□ 1.01
UPF3A-204ENST00000475218 TMEM94Q12767 1356 aa21.39■■□□□ 1.01
UPF3A-204ENST00000475218 CLTCL1P53675 1640 aa21.38■■□□□ 1.01
UPF3A-204ENST00000475218 NKTRP30414 1462 aaKnown RBP21.37■■□□□ 1.01
UPF3A-204ENST00000475218 RBM33Q96EV2 1170 aaKnown RBP21.37■■□□□ 1.01
UPF3A-204ENST00000475218 TRPM2O94759 1503 aa21.36■■□□□ 1.01
UPF3A-204ENST00000475218 PPP1R15AO75807 674 aaPredicted RBP21.35■■□□□ 1.01
UPF3A-204ENST00000475218 NRXN3Q9Y4C0 1643 aa21.34■■□□□ 1.01
UPF3A-204ENST00000475218 ILDR2Q71H61 639 aa21.34■■□□□ 1.01
UPF3A-204ENST00000475218 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.34■■□□□ 1.01
UPF3A-204ENST00000475218 TBX22Q9Y458 520 aa21.34■■□□□ 1.01
UPF3A-204ENST00000475218 BCANQ96GW7 911 aa21.33■■□□□ 1.01
UPF3A-204ENST00000475218 HDGFP51858 240 aaKnown RBP21.33■■□□□ 1
UPF3A-204ENST00000475218 DIP2AQ14689 1571 aa21.32■■□□□ 1
UPF3A-204ENST00000475218 PROSER2Q86WR7 435 aaPredicted RBP21.32■■□□□ 1
UPF3A-204ENST00000475218 NEXMIFQ5QGS0 1516 aa21.3■■□□□ 1
UPF3A-204ENST00000475218 SETBP1Q9Y6X0 1596 aa21.29■■□□□ 1
UPF3A-204ENST00000475218 PTPRUQ92729 1446 aa21.29■■□□□ 1
UPF3A-204ENST00000475218 TRIM52Q96A61 297 aa21.28■■□□□ 1
UPF3A-204ENST00000475218 MED1Q15648 1581 aaPredicted RBP21.28■■□□□ 1
UPF3A-204ENST00000475218 KIF1BO60333 1816 aa21.26■□□□□ 0.99
UPF3A-204ENST00000475218 PIK3R4Q99570 1358 aa21.25■□□□□ 0.99
UPF3A-204ENST00000475218 FAM135BQ49AJ0 1406 aa21.25■□□□□ 0.99
UPF3A-204ENST00000475218 SLC4A1APQ9BWU0 796 aaKnown RBP21.24■□□□□ 0.99
UPF3A-204ENST00000475218 ROBO1Q9Y6N7 1651 aa21.24■□□□□ 0.99
UPF3A-204ENST00000475218 XRN1Q8IZH2 1706 aaKnown RBP21.23■□□□□ 0.99
UPF3A-204ENST00000475218 FOXD1Q16676 465 aa21.22■□□□□ 0.99
UPF3A-204ENST00000475218 ZNF326Q5BKZ1 582 aaKnown RBP21.22■□□□□ 0.99
UPF3A-204ENST00000475218 METP08581 1390 aa21.21■□□□□ 0.99
UPF3A-204ENST00000475218 MSH6P52701 1360 aa21.21■□□□□ 0.99
UPF3A-204ENST00000475218 NCOA3Q9Y6Q9 1424 aa21.2■□□□□ 0.98
UPF3A-204ENST00000475218 AMOTL2Q9Y2J4 779 aa21.19■□□□□ 0.98
UPF3A-204ENST00000475218 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.18■□□□□ 0.98
UPF3A-204ENST00000475218 SETD1AO15047 1707 aaKnown RBP21.18■□□□□ 0.98
UPF3A-204ENST00000475218 PPLO60437 1756 aa21.15■□□□□ 0.98
UPF3A-204ENST00000475218 SLAIN2Q9P270 581 aa21.15■□□□□ 0.98
UPF3A-204ENST00000475218 MPHOSPH9Q99550 1183 aa21.15■□□□□ 0.98
UPF3A-204ENST00000475218 SETD5Q9C0A6 1442 aa21.12■□□□□ 0.97
UPF3A-204ENST00000475218 SPATA31E1Q6ZUB1 1445 aa21.11■□□□□ 0.97
UPF3A-204ENST00000475218 C19orf44Q9H6X5 657 aa21.11■□□□□ 0.97
UPF3A-204ENST00000475218 RPGRIP1LQ68CZ1 1315 aa21.09■□□□□ 0.97
UPF3A-204ENST00000475218 PHLPP1O60346 1717 aa21.09■□□□□ 0.97
UPF3A-204ENST00000475218 IFT172Q9UG01 1749 aa21.08■□□□□ 0.97
UPF3A-204ENST00000475218 CCDC144AA2RUR9 1427 aa21.08■□□□□ 0.97
UPF3A-204ENST00000475218 SOCS7O14512 581 aa21.08■□□□□ 0.96
UPF3A-204ENST00000475218 VGFO15240 615 aaPredicted RBP21.08■□□□□ 0.96
UPF3A-204ENST00000475218 C14orf37Q86TY3 774 aa21.08■□□□□ 0.96
UPF3A-204ENST00000475218 COL16A1Q07092 1604 aaPredicted RBP21.07■□□□□ 0.96
UPF3A-204ENST00000475218 RAB3GAP2Q9H2M9 1393 aa21.07■□□□□ 0.96
UPF3A-204ENST00000475218 NALCNQ8IZF0 1738 aa21.07■□□□□ 0.96
UPF3A-204ENST00000475218 DCCP43146 1447 aa21.06■□□□□ 0.96
UPF3A-204ENST00000475218 CADPS2Q86UW7 1296 aa21.06■□□□□ 0.96
UPF3A-204ENST00000475218 PRAG1Q86YV5 1406 aa21.05■□□□□ 0.96
UPF3A-204ENST00000475218 ADGRF5Q8IZF2 1346 aa21.04■□□□□ 0.96
UPF3A-204ENST00000475218 ATF3P18847 181 aa21.04■□□□□ 0.96
UPF3A-204ENST00000475218 ROBO2Q9HCK4 1378 aa21.03■□□□□ 0.96
UPF3A-204ENST00000475218 AHDC1Q5TGY3 1603 aaPredicted RBP21.03■□□□□ 0.96
UPF3A-204ENST00000475218 RGS17Q9UGC6 210 aaPredicted RBP21.03■□□□□ 0.96
UPF3A-204ENST00000475218 MST1RQ04912 1400 aa21.03■□□□□ 0.96
UPF3A-204ENST00000475218 ADGRL3Q9HAR2 1447 aa21.03■□□□□ 0.96
UPF3A-204ENST00000475218 PTCH1Q13635 1447 aa21.02■□□□□ 0.96
UPF3A-204ENST00000475218 RGL3Q3MIN7 710 aa21.01■□□□□ 0.95
UPF3A-204ENST00000475218 BRINP3Q76B58 766 aa21.01■□□□□ 0.95
UPF3A-204ENST00000475218 ASXL1Q8IXJ9 1541 aa21■□□□□ 0.95
UPF3A-204ENST00000475218 PHF23Q9BUL5 403 aaPredicted RBP20.97■□□□□ 0.95
UPF3A-204ENST00000475218 JCADQ9P266 1359 aa20.97■□□□□ 0.95
UPF3A-204ENST00000475218 PIK3C2GO75747 1445 aa20.96■□□□□ 0.95
UPF3A-204ENST00000475218 ACIN1Q9UKV3 1341 aaKnown RBP20.96■□□□□ 0.95
UPF3A-204ENST00000475218 ANKRD30BQ9BXX2 1392 aa20.96■□□□□ 0.95
UPF3A-204ENST00000475218 NHSL1Q5SYE7 1610 aa20.95■□□□□ 0.95
UPF3A-204ENST00000475218 LRP6O75581 1613 aa20.93■□□□□ 0.94
UPF3A-204ENST00000475218 SHPRHQ149N8 1683 aa20.93■□□□□ 0.94
UPF3A-204ENST00000475218 NRXN1Q9ULB1 1477 aa20.92■□□□□ 0.94
UPF3A-204ENST00000475218 TECPR2O15040 1411 aa20.91■□□□□ 0.94
UPF3A-204ENST00000475218 C1orf167Q5SNV9 1468 aa20.91■□□□□ 0.94
UPF3A-204ENST00000475218 DDX17Q92841 729 aaKnown RBP20.9■□□□□ 0.94
UPF3A-204ENST00000475218 KNDC1Q76NI1 1749 aa20.89■□□□□ 0.94
UPF3A-204ENST00000475218 TMEM132EQ6IEE7 984 aa20.89■□□□□ 0.93
UPF3A-204ENST00000475218 LRPPRCP42704 1394 aaKnown RBP20.89■□□□□ 0.93
UPF3A-204ENST00000475218 MYOM2P54296 1465 aa20.89■□□□□ 0.93
UPF3A-204ENST00000475218 LAMC1P11047 1609 aa20.89■□□□□ 0.93
UPF3A-204ENST00000475218 POTEAQ6S8J7 498 aa20.88■□□□□ 0.93
UPF3A-204ENST00000475218 HRCP23327 699 aa20.87■□□□□ 0.93
UPF3A-204ENST00000475218 ABCC11Q96J66 1382 aa20.87■□□□□ 0.93
UPF3A-204ENST00000475218 CDC42BPGQ6DT37 1551 aa20.86■□□□□ 0.93
UPF3A-204ENST00000475218 PLEKHH1Q9ULM0 1364 aa20.86■□□□□ 0.93
UPF3A-204ENST00000475218 STK26Q9P289 416 aa20.86■□□□□ 0.93
UPF3A-204ENST00000475218 SPATA31A6Q5VVP1 1343 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms