RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 HSPA1LP34931 641 aa28.24■■■□□ 2.11
COL7A1-209ENST00000474432 PLEKHG1Q9ULL1 1385 aa28.24■■■□□ 2.11
COL7A1-209ENST00000474432 KCNA6P17658 529 aa28.23■■■□□ 2.11
COL7A1-209ENST00000474432 SCAF1Q9H7N4 1312 aaKnown RBP28.22■■■□□ 2.11
COL7A1-209ENST00000474432 DISP3Q9P2K9 1392 aa28.22■■■□□ 2.11
COL7A1-209ENST00000474432 SPHKAPQ2M3C7 1700 aa28.21■■■□□ 2.11
COL7A1-209ENST00000474432 NWD1Q149M9 1564 aa28.21■■■□□ 2.11
COL7A1-209ENST00000474432 CHGAP10645 457 aaKnown RBP28.19■■■□□ 2.1
COL7A1-209ENST00000474432 HFM1A2PYH4 1435 aa28.18■■■□□ 2.1
COL7A1-209ENST00000474432 SENP3Q9H4L4 574 aaPredicted RBP28.18■■■□□ 2.1
COL7A1-209ENST00000474432 CHD2O14647 1828 aaKnown RBP28.17■■■□□ 2.1
COL7A1-209ENST00000474432 TMEM94Q12767 1356 aa28.16■■■□□ 2.1
COL7A1-209ENST00000474432 ADAMTS13Q76LX8 1427 aa28.15■■■□□ 2.1
COL7A1-209ENST00000474432 HDGFP51858 240 aaKnown RBP28.14■■■□□ 2.1
COL7A1-209ENST00000474432 NUTM2DQ5VT03 806 aaPredicted RBP28.14■■■□□ 2.1
COL7A1-209ENST00000474432 NKTRP30414 1462 aaKnown RBP28.14■■■□□ 2.09
COL7A1-209ENST00000474432 ILDR2Q71H61 639 aa28.13■■■□□ 2.09
COL7A1-209ENST00000474432 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.13■■■□□ 2.09
COL7A1-209ENST00000474432 PPP1R15AO75807 674 aaPredicted RBP28.12■■■□□ 2.09
COL7A1-209ENST00000474432 RBM33Q96EV2 1170 aaKnown RBP28.12■■■□□ 2.09
COL7A1-209ENST00000474432 BCANQ96GW7 911 aa28.12■■■□□ 2.09
COL7A1-209ENST00000474432 TBX22Q9Y458 520 aa28.12■■■□□ 2.09
COL7A1-209ENST00000474432 CLTCL1P53675 1640 aa28.1■■■□□ 2.09
COL7A1-209ENST00000474432 PROSER2Q86WR7 435 aaPredicted RBP28.1■■■□□ 2.09
COL7A1-209ENST00000474432 TRPM2O94759 1503 aa28.09■■■□□ 2.09
COL7A1-209ENST00000474432 DIP2AQ14689 1571 aa28.06■■■□□ 2.08
COL7A1-209ENST00000474432 NRXN3Q9Y4C0 1643 aa28.05■■■□□ 2.08
COL7A1-209ENST00000474432 FAM135BQ49AJ0 1406 aa28.01■■■□□ 2.08
COL7A1-209ENST00000474432 TRIM52Q96A61 297 aa28.01■■■□□ 2.07
COL7A1-209ENST00000474432 MED1Q15648 1581 aaPredicted RBP28.01■■■□□ 2.07
COL7A1-209ENST00000474432 PIK3R4Q99570 1358 aa28■■■□□ 2.07
COL7A1-209ENST00000474432 NEXMIFQ5QGS0 1516 aa28■■■□□ 2.07
COL7A1-209ENST00000474432 PTPRUQ92729 1446 aa28■■■□□ 2.07
COL7A1-209ENST00000474432 SETBP1Q9Y6X0 1596 aa27.99■■■□□ 2.07
COL7A1-209ENST00000474432 KIF1BO60333 1816 aa27.99■■■□□ 2.07
COL7A1-209ENST00000474432 ROBO1Q9Y6N7 1651 aa27.95■■■□□ 2.07
COL7A1-209ENST00000474432 ZNF326Q5BKZ1 582 aaKnown RBP27.95■■■□□ 2.06
COL7A1-209ENST00000474432 SLC4A1APQ9BWU0 796 aaKnown RBP27.95■■■□□ 2.06
COL7A1-209ENST00000474432 MSH6P52701 1360 aa27.94■■■□□ 2.06
COL7A1-209ENST00000474432 NCOA3Q9Y6Q9 1424 aa27.93■■■□□ 2.06
COL7A1-209ENST00000474432 XRN1Q8IZH2 1706 aaKnown RBP27.92■■■□□ 2.06
COL7A1-209ENST00000474432 AMOTL2Q9Y2J4 779 aa27.91■■■□□ 2.06
COL7A1-209ENST00000474432 METP08581 1390 aa27.89■■■□□ 2.06
COL7A1-209ENST00000474432 FOXD1Q16676 465 aa27.89■■■□□ 2.06
COL7A1-209ENST00000474432 SLAIN2Q9P270 581 aa27.88■■■□□ 2.05
COL7A1-209ENST00000474432 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.88■■■□□ 2.05
COL7A1-209ENST00000474432 SETD1AO15047 1707 aaKnown RBP27.84■■■□□ 2.05
COL7A1-209ENST00000474432 PPLO60437 1756 aa27.83■■■□□ 2.05
COL7A1-209ENST00000474432 SOCS7O14512 581 aa27.82■■■□□ 2.04
COL7A1-209ENST00000474432 MPHOSPH9Q99550 1183 aa27.82■■■□□ 2.04
COL7A1-209ENST00000474432 C19orf44Q9H6X5 657 aa27.82■■■□□ 2.04
COL7A1-209ENST00000474432 RPGRIP1LQ68CZ1 1315 aa27.79■■■□□ 2.04
COL7A1-209ENST00000474432 SETD5Q9C0A6 1442 aa27.77■■■□□ 2.04
COL7A1-209ENST00000474432 VGFO15240 615 aaPredicted RBP27.77■■■□□ 2.04
COL7A1-209ENST00000474432 C14orf37Q86TY3 774 aa27.77■■■□□ 2.04
COL7A1-209ENST00000474432 PHLPP1O60346 1717 aa27.76■■■□□ 2.03
COL7A1-209ENST00000474432 CADPS2Q86UW7 1296 aa27.76■■■□□ 2.03
COL7A1-209ENST00000474432 SPATA31E1Q6ZUB1 1445 aa27.75■■■□□ 2.03
COL7A1-209ENST00000474432 COL16A1Q07092 1604 aaPredicted RBP27.74■■■□□ 2.03
COL7A1-209ENST00000474432 CCDC144AA2RUR9 1427 aa27.73■■■□□ 2.03
COL7A1-209ENST00000474432 DCCP43146 1447 aa27.73■■■□□ 2.03
COL7A1-209ENST00000474432 ATF3P18847 181 aa27.72■■■□□ 2.03
COL7A1-209ENST00000474432 IFT172Q9UG01 1749 aa27.71■■■□□ 2.03
COL7A1-209ENST00000474432 NALCNQ8IZF0 1738 aa27.7■■■□□ 2.03
COL7A1-209ENST00000474432 RGS17Q9UGC6 210 aaPredicted RBP27.7■■■□□ 2.02
COL7A1-209ENST00000474432 AHDC1Q5TGY3 1603 aaPredicted RBP27.69■■■□□ 2.02
COL7A1-209ENST00000474432 PRAG1Q86YV5 1406 aa27.68■■■□□ 2.02
COL7A1-209ENST00000474432 ADGRL3Q9HAR2 1447 aa27.68■■■□□ 2.02
COL7A1-209ENST00000474432 PHF23Q9BUL5 403 aaPredicted RBP27.68■■■□□ 2.02
COL7A1-209ENST00000474432 RAB3GAP2Q9H2M9 1393 aa27.68■■■□□ 2.02
COL7A1-209ENST00000474432 ADGRF5Q8IZF2 1346 aa27.67■■■□□ 2.02
COL7A1-209ENST00000474432 MST1RQ04912 1400 aa27.67■■■□□ 2.02
COL7A1-209ENST00000474432 PTCH1Q13635 1447 aa27.67■■■□□ 2.02
COL7A1-209ENST00000474432 ROBO2Q9HCK4 1378 aa27.66■■■□□ 2.02
COL7A1-209ENST00000474432 BRINP3Q76B58 766 aa27.66■■■□□ 2.02
COL7A1-209ENST00000474432 ACIN1Q9UKV3 1341 aaKnown RBP27.65■■■□□ 2.02
COL7A1-209ENST00000474432 RGL3Q3MIN7 710 aa27.64■■■□□ 2.02
COL7A1-209ENST00000474432 JCADQ9P266 1359 aa27.63■■■□□ 2.01
COL7A1-209ENST00000474432 ASXL1Q8IXJ9 1541 aa27.61■■■□□ 2.01
COL7A1-209ENST00000474432 ANKRD30BQ9BXX2 1392 aa27.6■■■□□ 2.01
COL7A1-209ENST00000474432 NHSL1Q5SYE7 1610 aa27.58■■■□□ 2.01
COL7A1-209ENST00000474432 PIK3C2GO75747 1445 aa27.56■■■□□ 2
COL7A1-209ENST00000474432 SHPRHQ149N8 1683 aa27.56■■■□□ 2
COL7A1-209ENST00000474432 LRP6O75581 1613 aa27.54■■■□□ 2
COL7A1-209ENST00000474432 C1orf167Q5SNV9 1468 aa27.52■■■□□ 2
COL7A1-209ENST00000474432 NRXN1Q9ULB1 1477 aa27.51■■■□□ 2
COL7A1-209ENST00000474432 TECPR2O15040 1411 aa27.51■■□□□ 1.99
COL7A1-209ENST00000474432 POTEAQ6S8J7 498 aa27.51■■□□□ 1.99
COL7A1-209ENST00000474432 LRPPRCP42704 1394 aaKnown RBP27.49■■□□□ 1.99
COL7A1-209ENST00000474432 SPATA31A6Q5VVP1 1343 aa27.49■■□□□ 1.99
COL7A1-209ENST00000474432 DDX17Q92841 729 aaKnown RBP27.49■■□□□ 1.99
COL7A1-209ENST00000474432 LAMC1P11047 1609 aa27.49■■□□□ 1.99
COL7A1-209ENST00000474432 KNDC1Q76NI1 1749 aa27.48■■□□□ 1.99
COL7A1-209ENST00000474432 HRCP23327 699 aa27.48■■□□□ 1.99
COL7A1-209ENST00000474432 TMEM132EQ6IEE7 984 aa27.48■■□□□ 1.99
COL7A1-209ENST00000474432 MYOM2P54296 1465 aa27.47■■□□□ 1.99
COL7A1-209ENST00000474432 ABCC11Q96J66 1382 aa27.47■■□□□ 1.99
COL7A1-209ENST00000474432 ORAI2Q96SN7 254 aa27.45■■□□□ 1.98
COL7A1-209ENST00000474432 STK26Q9P289 416 aa27.45■■□□□ 1.98
COL7A1-209ENST00000474432 CDC42BPGQ6DT37 1551 aa27.44■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms