RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 TRIM52Q96A61 297 aa27■■□□□ 1.91
UPF3A-203ENST00000474056 TRPM2O94759 1503 aa26.99■■□□□ 1.91
UPF3A-203ENST00000474056 SLC26A8Q96RN1 970 aa26.98■■□□□ 1.91
UPF3A-203ENST00000474056 PLEKHG1Q9ULL1 1385 aa26.97■■□□□ 1.91
UPF3A-203ENST00000474056 SENP3Q9H4L4 574 aaPredicted RBP26.97■■□□□ 1.91
UPF3A-203ENST00000474056 KIF1BO60333 1816 aa26.97■■□□□ 1.91
UPF3A-203ENST00000474056 ALKQ9UM73 1620 aa26.96■■□□□ 1.91
UPF3A-203ENST00000474056 PPP1R15AO75807 674 aaPredicted RBP26.95■■□□□ 1.9
UPF3A-203ENST00000474056 NWD1Q149M9 1564 aa26.94■■□□□ 1.9
UPF3A-203ENST00000474056 NUTM2DQ5VT03 806 aaPredicted RBP26.94■■□□□ 1.9
UPF3A-203ENST00000474056 CHD2O14647 1828 aaKnown RBP26.94■■□□□ 1.9
UPF3A-203ENST00000474056 HDGFP51858 240 aaKnown RBP26.93■■□□□ 1.9
UPF3A-203ENST00000474056 BCANQ96GW7 911 aa26.93■■□□□ 1.9
UPF3A-203ENST00000474056 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.92■■□□□ 1.9
UPF3A-203ENST00000474056 TOM1O60784 492 aa26.9■■□□□ 1.9
UPF3A-203ENST00000474056 SLC4A1APQ9BWU0 796 aaKnown RBP26.9■■□□□ 1.9
UPF3A-203ENST00000474056 KCNA6P17658 529 aa26.89■■□□□ 1.9
UPF3A-203ENST00000474056 ADAMTS13Q76LX8 1427 aa26.87■■□□□ 1.89
UPF3A-203ENST00000474056 DIP2AQ14689 1571 aa26.87■■□□□ 1.89
UPF3A-203ENST00000474056 SCAF1Q9H7N4 1312 aaKnown RBP26.87■■□□□ 1.89
UPF3A-203ENST00000474056 PIP4K2BP78356 416 aa26.86■■□□□ 1.89
UPF3A-203ENST00000474056 NRXN3Q9Y4C0 1643 aa26.86■■□□□ 1.89
UPF3A-203ENST00000474056 NKTRP30414 1462 aaKnown RBP26.86■■□□□ 1.89
UPF3A-203ENST00000474056 NEXMIFQ5QGS0 1516 aa26.85■■□□□ 1.89
UPF3A-203ENST00000474056 ZNF326Q5BKZ1 582 aaKnown RBP26.84■■□□□ 1.89
UPF3A-203ENST00000474056 TMEM94Q12767 1356 aa26.83■■□□□ 1.88
UPF3A-203ENST00000474056 TBX22Q9Y458 520 aa26.82■■□□□ 1.88
UPF3A-203ENST00000474056 SETD5Q9C0A6 1442 aa26.82■■□□□ 1.88
UPF3A-203ENST00000474056 FOXD1Q16676 465 aa26.81■■□□□ 1.88
UPF3A-203ENST00000474056 SETBP1Q9Y6X0 1596 aa26.8■■□□□ 1.88
UPF3A-203ENST00000474056 PROSER2Q86WR7 435 aaPredicted RBP26.79■■□□□ 1.88
UPF3A-203ENST00000474056 RBM33Q96EV2 1170 aaKnown RBP26.78■■□□□ 1.88
UPF3A-203ENST00000474056 MPHOSPH9Q99550 1183 aa26.77■■□□□ 1.88
UPF3A-203ENST00000474056 PPLO60437 1756 aa26.76■■□□□ 1.87
UPF3A-203ENST00000474056 PIK3R4Q99570 1358 aa26.74■■□□□ 1.87
UPF3A-203ENST00000474056 HSPA1LP34931 641 aa26.74■■□□□ 1.87
UPF3A-203ENST00000474056 RAB3GAP2Q9H2M9 1393 aa26.73■■□□□ 1.87
UPF3A-203ENST00000474056 PTPRUQ92729 1446 aa26.73■■□□□ 1.87
UPF3A-203ENST00000474056 XRN1Q8IZH2 1706 aaKnown RBP26.71■■□□□ 1.87
UPF3A-203ENST00000474056 CCDC144AA2RUR9 1427 aa26.7■■□□□ 1.86
UPF3A-203ENST00000474056 SETD1AO15047 1707 aaKnown RBP26.69■■□□□ 1.86
UPF3A-203ENST00000474056 ACIN1Q9UKV3 1341 aaKnown RBP26.67■■□□□ 1.86
UPF3A-203ENST00000474056 IFT172Q9UG01 1749 aa26.66■■□□□ 1.86
UPF3A-203ENST00000474056 MSH6P52701 1360 aa26.66■■□□□ 1.86
UPF3A-203ENST00000474056 AMOTL2Q9Y2J4 779 aa26.65■■□□□ 1.86
UPF3A-203ENST00000474056 METP08581 1390 aa26.65■■□□□ 1.86
UPF3A-203ENST00000474056 ROBO1Q9Y6N7 1651 aa26.65■■□□□ 1.86
UPF3A-203ENST00000474056 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.64■■□□□ 1.85
UPF3A-203ENST00000474056 RPGRIP1LQ68CZ1 1315 aa26.64■■□□□ 1.85
UPF3A-203ENST00000474056 NCOA3Q9Y6Q9 1424 aa26.63■■□□□ 1.85
UPF3A-203ENST00000474056 DISP3Q9P2K9 1392 aa26.62■■□□□ 1.85
UPF3A-203ENST00000474056 SPATA31E1Q6ZUB1 1445 aa26.62■■□□□ 1.85
UPF3A-203ENST00000474056 VGFO15240 615 aaPredicted RBP26.61■■□□□ 1.85
UPF3A-203ENST00000474056 FAM135BQ49AJ0 1406 aa26.61■■□□□ 1.85
UPF3A-203ENST00000474056 RGL3Q3MIN7 710 aa26.57■■□□□ 1.84
UPF3A-203ENST00000474056 C14orf37Q86TY3 774 aa26.56■■□□□ 1.84
UPF3A-203ENST00000474056 MED1Q15648 1581 aaPredicted RBP26.54■■□□□ 1.84
UPF3A-203ENST00000474056 NALCNQ8IZF0 1738 aa26.52■■□□□ 1.84
UPF3A-203ENST00000474056 ADGRF5Q8IZF2 1346 aa26.52■■□□□ 1.84
UPF3A-203ENST00000474056 SLAIN2Q9P270 581 aa26.52■■□□□ 1.84
UPF3A-203ENST00000474056 C19orf44Q9H6X5 657 aa26.51■■□□□ 1.83
UPF3A-203ENST00000474056 PHLPP1O60346 1717 aa26.5■■□□□ 1.83
UPF3A-203ENST00000474056 ANKRD30BQ9BXX2 1392 aa26.49■■□□□ 1.83
UPF3A-203ENST00000474056 HRCP23327 699 aa26.49■■□□□ 1.83
UPF3A-203ENST00000474056 PTCH1Q13635 1447 aa26.48■■□□□ 1.83
UPF3A-203ENST00000474056 CADPS2Q86UW7 1296 aa26.47■■□□□ 1.83
UPF3A-203ENST00000474056 DCCP43146 1447 aa26.47■■□□□ 1.83
UPF3A-203ENST00000474056 ATF3P18847 181 aa26.46■■□□□ 1.83
UPF3A-203ENST00000474056 PIK3C2GO75747 1445 aa26.45■■□□□ 1.82
UPF3A-203ENST00000474056 PRAG1Q86YV5 1406 aa26.45■■□□□ 1.82
UPF3A-203ENST00000474056 ADGRL3Q9HAR2 1447 aa26.45■■□□□ 1.82
UPF3A-203ENST00000474056 ROBO2Q9HCK4 1378 aa26.44■■□□□ 1.82
UPF3A-203ENST00000474056 ASXL1Q8IXJ9 1541 aa26.44■■□□□ 1.82
UPF3A-203ENST00000474056 ILDR2Q71H61 639 aa26.41■■□□□ 1.82
UPF3A-203ENST00000474056 MYOM2P54296 1465 aa26.41■■□□□ 1.82
UPF3A-203ENST00000474056 COL16A1Q07092 1604 aaPredicted RBP26.4■■□□□ 1.82
UPF3A-203ENST00000474056 KNDC1Q76NI1 1749 aa26.4■■□□□ 1.82
UPF3A-203ENST00000474056 MST1RQ04912 1400 aa26.39■■□□□ 1.82
UPF3A-203ENST00000474056 NRXN1Q9ULB1 1477 aa26.39■■□□□ 1.82
UPF3A-203ENST00000474056 AHDC1Q5TGY3 1603 aaPredicted RBP26.39■■□□□ 1.81
UPF3A-203ENST00000474056 LAMC1P11047 1609 aa26.36■■□□□ 1.81
UPF3A-203ENST00000474056 TMEM132EQ6IEE7 984 aa26.34■■□□□ 1.81
UPF3A-203ENST00000474056 BRINP3Q76B58 766 aa26.34■■□□□ 1.81
UPF3A-203ENST00000474056 TECPR2O15040 1411 aa26.33■■□□□ 1.81
UPF3A-203ENST00000474056 NHSL1Q5SYE7 1610 aa26.33■■□□□ 1.81
UPF3A-203ENST00000474056 LRPPRCP42704 1394 aaKnown RBP26.33■■□□□ 1.8
UPF3A-203ENST00000474056 STK26Q9P289 416 aa26.31■■□□□ 1.8
UPF3A-203ENST00000474056 YTHDC2Q9H6S0 1430 aaKnown RBP26.3■■□□□ 1.8
UPF3A-203ENST00000474056 C14orf93Q9H972 538 aaKnown RBP26.29■■□□□ 1.8
UPF3A-203ENST00000474056 CFAP70Q5T0N1 1121 aa26.28■■□□□ 1.8
UPF3A-203ENST00000474056 PHF23Q9BUL5 403 aaPredicted RBP26.28■■□□□ 1.8
UPF3A-203ENST00000474056 ABCC11Q96J66 1382 aa26.28■■□□□ 1.8
UPF3A-203ENST00000474056 JCADQ9P266 1359 aa26.28■■□□□ 1.8
UPF3A-203ENST00000474056 C1orf167Q5SNV9 1468 aa26.28■■□□□ 1.8
UPF3A-203ENST00000474056 CDC42BPGQ6DT37 1551 aa26.27■■□□□ 1.8
UPF3A-203ENST00000474056 SHPRHQ149N8 1683 aa26.27■■□□□ 1.8
UPF3A-203ENST00000474056 PLEKHH1Q9ULM0 1364 aa26.25■■□□□ 1.79
UPF3A-203ENST00000474056 WAPLQ7Z5K2 1190 aa26.25■■□□□ 1.79
UPF3A-203ENST00000474056 DHX57Q6P158 1386 aaKnown RBP26.23■■□□□ 1.79
UPF3A-203ENST00000474056 DCAF11Q8TEB1 546 aa26.23■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms