RNA–Protein interactions for RNA: ENST00000472789.1

SMARCD3-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 863 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-208ENST00000472789 CCDC144AA2RUR9 1427 aa15.43■□□□□ 0.06
SMARCD3-208ENST00000472789 HSPA1LP34931 641 aa15.42■□□□□ 0.06
SMARCD3-208ENST00000472789 NUTM2DQ5VT03 806 aaPredicted RBP15.42■□□□□ 0.06
SMARCD3-208ENST00000472789 CLTCL1P53675 1640 aa15.42■□□□□ 0.06
SMARCD3-208ENST00000472789 NEURL4Q96JN8 1562 aa15.41■□□□□ 0.06
SMARCD3-208ENST00000472789 LTKP29376 864 aa15.41■□□□□ 0.06
SMARCD3-208ENST00000472789 HDGFP51858 240 aaKnown RBP15.41■□□□□ 0.06
SMARCD3-208ENST00000472789 SCAF11Q99590 1463 aaKnown RBP15.4■□□□□ 0.06
SMARCD3-208ENST00000472789 TMEM131LA2VDJ0 1609 aa15.4■□□□□ 0.06
SMARCD3-208ENST00000472789 ZEB1P37275 1124 aaPredicted RBP15.4■□□□□ 0.06
SMARCD3-208ENST00000472789 NPHP4O75161 1426 aaPredicted RBP15.4■□□□□ 0.06
SMARCD3-208ENST00000472789 RIMS2Q9UQ26 1411 aa15.4■□□□□ 0.06
SMARCD3-208ENST00000472789 MED1Q15648 1581 aaPredicted RBP15.4■□□□□ 0.06
SMARCD3-208ENST00000472789 SLIT1O75093 1534 aa15.39■□□□□ 0.05
SMARCD3-208ENST00000472789 KDM5AP29375 1690 aaKnown RBP15.39■□□□□ 0.05
SMARCD3-208ENST00000472789 MYO5BQ9ULV0 1848 aa15.39■□□□□ 0.05
SMARCD3-208ENST00000472789 PIP4K2BP78356 416 aa15.39■□□□□ 0.05
SMARCD3-208ENST00000472789 POLR1AO95602 1720 aaPredicted RBP15.39■□□□□ 0.05
SMARCD3-208ENST00000472789 ARHGAP23Q9P227 1491 aa15.39■□□□□ 0.05
SMARCD3-208ENST00000472789 RGL3Q3MIN7 710 aa15.38■□□□□ 0.05
SMARCD3-208ENST00000472789 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.38■□□□□ 0.05
SMARCD3-208ENST00000472789 SCAF1Q9H7N4 1312 aaKnown RBP15.38■□□□□ 0.05
SMARCD3-208ENST00000472789 CPS1P31327 1500 aa15.38■□□□□ 0.05
SMARCD3-208ENST00000472789 KIF1BO60333 1816 aa15.37■□□□□ 0.05
SMARCD3-208ENST00000472789 CLSPNQ9HAW4 1339 aa15.37■□□□□ 0.05
SMARCD3-208ENST00000472789 ANKRD30BQ9BXX2 1392 aa15.36■□□□□ 0.05
SMARCD3-208ENST00000472789 TOM1O60784 492 aa15.35■□□□□ 0.05
SMARCD3-208ENST00000472789 ALKQ9UM73 1620 aa15.35■□□□□ 0.05
SMARCD3-208ENST00000472789 ZFYVE9O95405 1425 aa15.34■□□□□ 0.05
SMARCD3-208ENST00000472789 MED14O60244 1454 aa15.33■□□□□ 0.05
SMARCD3-208ENST00000472789 IQGAP1P46940 1657 aa15.33■□□□□ 0.04
SMARCD3-208ENST00000472789 SLC26A8Q96RN1 970 aa15.33■□□□□ 0.04
SMARCD3-208ENST00000472789 RPGRIP1LQ68CZ1 1315 aa15.31■□□□□ 0.04
SMARCD3-208ENST00000472789 DHX57Q6P158 1386 aaKnown RBP15.31■□□□□ 0.04
SMARCD3-208ENST00000472789 PLEKHG1Q9ULL1 1385 aa15.31■□□□□ 0.04
SMARCD3-208ENST00000472789 VGFO15240 615 aaPredicted RBP15.3■□□□□ 0.04
SMARCD3-208ENST00000472789 SPATA31E1Q6ZUB1 1445 aa15.29■□□□□ 0.04
SMARCD3-208ENST00000472789 NEXMIFQ5QGS0 1516 aa15.28■□□□□ 0.04
SMARCD3-208ENST00000472789 NEUROD1Q13562 356 aa15.28■□□□□ 0.04
SMARCD3-208ENST00000472789 STRCP1A6NGW2 1772 aa15.28■□□□□ 0.04
SMARCD3-208ENST00000472789 SIN3AQ96ST3 1273 aa15.26■□□□□ 0.03
SMARCD3-208ENST00000472789 KDM2AQ9Y2K7 1162 aa15.26■□□□□ 0.03
SMARCD3-208ENST00000472789 ADGRF5Q8IZF2 1346 aa15.24■□□□□ 0.03
SMARCD3-208ENST00000472789 LRRC7Q96NW7 1537 aa15.24■□□□□ 0.03
SMARCD3-208ENST00000472789 DCAF11Q8TEB1 546 aa15.24■□□□□ 0.03
SMARCD3-208ENST00000472789 PHF23Q9BUL5 403 aaPredicted RBP15.23■□□□□ 0.03
SMARCD3-208ENST00000472789 TBX22Q9Y458 520 aa15.23■□□□□ 0.03
SMARCD3-208ENST00000472789 PPLO60437 1756 aa15.23■□□□□ 0.03
SMARCD3-208ENST00000472789 ADAMTS13Q76LX8 1427 aa15.22■□□□□ 0.03
SMARCD3-208ENST00000472789 KCNA6P17658 529 aa15.2■□□□□ 0.02
SMARCD3-208ENST00000472789 DIP2AQ14689 1571 aa15.19■□□□□ 0.02
SMARCD3-208ENST00000472789 SETBP1Q9Y6X0 1596 aa15.19■□□□□ 0.02
SMARCD3-208ENST00000472789 PROSER2Q86WR7 435 aaPredicted RBP15.18■□□□□ 0.02
SMARCD3-208ENST00000472789 NRXN3Q9Y4C0 1643 aa15.17■□□□□ 0.02
SMARCD3-208ENST00000472789 IFT172Q9UG01 1749 aa15.17■□□□□ 0.02
SMARCD3-208ENST00000472789 METP08581 1390 aa15.17■□□□□ 0.02
SMARCD3-208ENST00000472789 RGS17Q9UGC6 210 aaPredicted RBP15.17■□□□□ 0.02
SMARCD3-208ENST00000472789 TIMELESSQ9UNS1 1208 aa15.17■□□□□ 0.02
SMARCD3-208ENST00000472789 AMOTL2Q9Y2J4 779 aa15.17■□□□□ 0.02
SMARCD3-208ENST00000472789 MYOM2P54296 1465 aa15.16■□□□□ 0.02
SMARCD3-208ENST00000472789 RBM33Q96EV2 1170 aaKnown RBP15.16■□□□□ 0.02
SMARCD3-208ENST00000472789 PIK3R4Q99570 1358 aa15.15■□□□□ 0.02
SMARCD3-208ENST00000472789 C14orf37Q86TY3 774 aa15.15■□□□□ 0.02
SMARCD3-208ENST00000472789 L3MBTL2Q969R5 705 aa15.15■□□□□ 0.02
SMARCD3-208ENST00000472789 PIK3C2GO75747 1445 aa15.15■□□□□ 0.02
SMARCD3-208ENST00000472789 TONSLQ96HA7 1378 aa15.14■□□□□ 0.01
SMARCD3-208ENST00000472789 CFAP70Q5T0N1 1121 aa15.14■□□□□ 0.01
SMARCD3-208ENST00000472789 STAC3Q96MF2 364 aa15.14■□□□□ 0.01
SMARCD3-208ENST00000472789 STK26Q9P289 416 aa15.14■□□□□ 0.01
SMARCD3-208ENST00000472789 XIRP1Q702N8 1843 aaKnown RBP15.14■□□□□ 0.01
SMARCD3-208ENST00000472789 TMEM132EQ6IEE7 984 aa15.13■□□□□ 0.01
SMARCD3-208ENST00000472789 PTPRUQ92729 1446 aa15.13■□□□□ 0.01
SMARCD3-208ENST00000472789 TMEM94Q12767 1356 aa15.12■□□□□ 0.01
SMARCD3-208ENST00000472789 C14orf93Q9H972 538 aaKnown RBP15.12■□□□□ 0.01
SMARCD3-208ENST00000472789 NKTRP30414 1462 aaKnown RBP15.12■□□□□ 0.01
SMARCD3-208ENST00000472789 CHD2O14647 1828 aaKnown RBP15.12■□□□□ 0.01
SMARCD3-208ENST00000472789 NWD1Q149M9 1564 aa15.11■□□□□ 0.01
SMARCD3-208ENST00000472789 NRXN1Q9ULB1 1477 aa15.11■□□□□ 0.01
SMARCD3-208ENST00000472789 SETD1AO15047 1707 aaKnown RBP15.08■□□□□ 0
SMARCD3-208ENST00000472789 FAM135BQ49AJ0 1406 aa15.07■□□□□ 0
SMARCD3-208ENST00000472789 LAMC1P11047 1609 aa15.06■□□□□ 0
SMARCD3-208ENST00000472789 XRN1Q8IZH2 1706 aaKnown RBP15.06■□□□□ 0
SMARCD3-208ENST00000472789 LRPPRCP42704 1394 aaKnown RBP15.06■□□□□ 0
SMARCD3-208ENST00000472789 MSH6P52701 1360 aa15.06■□□□□ 0
SMARCD3-208ENST00000472789 PRAG1Q86YV5 1406 aa15.06■□□□□ 0
SMARCD3-208ENST00000472789 YTHDC2Q9H6S0 1430 aaKnown RBP15.06■□□□□ 0
SMARCD3-208ENST00000472789 POTEAQ6S8J7 498 aa15.05■□□□□ -0
SMARCD3-208ENST00000472789 ROBO2Q9HCK4 1378 aa15.05■□□□□ -0
SMARCD3-208ENST00000472789 ASXL1Q8IXJ9 1541 aa15.05■□□□□ -0
SMARCD3-208ENST00000472789 TRAK1Q9UPV9 953 aa15.04■□□□□ -0
SMARCD3-208ENST00000472789 PTCH1Q13635 1447 aa15.03■□□□□ -0
SMARCD3-208ENST00000472789 SAFB2Q14151 953 aaKnown RBP eCLIP15.03■□□□□ -0
SMARCD3-208ENST00000472789 NBPF1Q3BBV0 1214 aa15.03■□□□□ -0
SMARCD3-208ENST00000472789 WAPLQ7Z5K2 1190 aa15.03■□□□□ -0
SMARCD3-208ENST00000472789 POGKQ9P215 609 aa15.03■□□□□ -0
SMARCD3-208ENST00000472789 ABCC11Q96J66 1382 aa15.02■□□□□ -0
SMARCD3-208ENST00000472789 ATF3P18847 181 aa15.02■□□□□ -0
SMARCD3-208ENST00000472789 ROBO1Q9Y6N7 1651 aa15.01□□□□□ -0.01
SMARCD3-208ENST00000472789 PRAM1Q96QH2 718 aa15.01□□□□□ -0.01
SMARCD3-208ENST00000472789 C19orf44Q9H6X5 657 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms