RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 NBPF26B4DH59 902 aa13.46□□□□□ -0.25
USP54-208ENST00000461520 CEP164Q9UPV0 1460 aa13.46□□□□□ -0.25
USP54-208ENST00000461520 PTGDRQ13258 359 aa13.45□□□□□ -0.26
USP54-208ENST00000461520 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.45□□□□□ -0.26
USP54-208ENST00000461520 FANCD2Q9BXW9 1451 aa13.44□□□□□ -0.26
USP54-208ENST00000461520 LRCH3Q96II8 777 aa13.44□□□□□ -0.26
USP54-208ENST00000461520 WBP1LQ9NX94 342 aa13.44□□□□□ -0.26
USP54-208ENST00000461520 RBM26Q5T8P6 1007 aaKnown RBP13.42□□□□□ -0.26
USP54-208ENST00000461520 SAMD7Q7Z3H4 446 aa13.42□□□□□ -0.26
USP54-208ENST00000461520 HPS5Q9UPZ3 1129 aa13.41□□□□□ -0.26
USP54-208ENST00000461520 TSR3Q9UJK0 312 aaKnown RBP13.39□□□□□ -0.27
USP54-208ENST00000461520 SMYD5Q6GMV2 418 aa13.38□□□□□ -0.27
USP54-208ENST00000461520 FCHSD2O94868 740 aa13.36□□□□□ -0.27
USP54-208ENST00000461520 EYA1Q99502 592 aa13.36□□□□□ -0.27
USP54-208ENST00000461520 FAM161AQ3B820 660 aa13.35□□□□□ -0.27
USP54-208ENST00000461520 CCDC88BA6NC98 1476 aa13.35□□□□□ -0.27
USP54-208ENST00000461520 PPP4CP60510 307 aa13.34□□□□□ -0.27
USP54-208ENST00000461520 HDGFP51858 240 aaKnown RBP13.32□□□□□ -0.28
USP54-208ENST00000461520 URB2Q14146 1524 aaKnown RBP13.32□□□□□ -0.28
USP54-208ENST00000461520 RNF40O75150 1001 aa13.31□□□□□ -0.28
USP54-208ENST00000461520 SWT1Q5T5J6 900 aaKnown RBP13.31□□□□□ -0.28
USP54-208ENST00000461520 NYAP1Q6ZVC0 841 aa13.31□□□□□ -0.28
USP54-208ENST00000461520 ADGRG1Q9Y653 693 aa13.31□□□□□ -0.28
USP54-208ENST00000461520 PRDM2Q13029 1718 aa13.29□□□□□ -0.28
USP54-208ENST00000461520 HIC1Q14526 733 aa13.27□□□□□ -0.29
USP54-208ENST00000461520 RBM46Q8TBY0 533 aaKnown RBP13.27□□□□□ -0.29
USP54-208ENST00000461520 FECHP22830 423 aa13.26□□□□□ -0.29
USP54-208ENST00000461520 GPR37O15354 613 aa13.25□□□□□ -0.29
USP54-208ENST00000461520 ITGBL1O95965 494 aaPredicted RBP13.25□□□□□ -0.29
USP54-208ENST00000461520 IFFO2Q5TF58 517 aa13.25□□□□□ -0.29
USP54-208ENST00000461520 RIMBP3CA6NJZ7 1639 aa13.22□□□□□ -0.29
USP54-208ENST00000461520 RIMBP3BA6NNM3 1639 aa13.22□□□□□ -0.29
USP54-208ENST00000461520 RIMBP3Q9UFD9 1639 aa13.22□□□□□ -0.29
USP54-208ENST00000461520 RCCD1A6NED2 376 aa13.22□□□□□ -0.29
USP54-208ENST00000461520 GNPATO15228 680 aa13.22□□□□□ -0.29
USP54-208ENST00000461520 DNAJB2P25686 324 aa13.22□□□□□ -0.29
USP54-208ENST00000461520 GPIHBP1Q8IV16 184 aa13.21□□□□□ -0.29
USP54-208ENST00000461520 SLF2Q8IX21 1173 aa13.21□□□□□ -0.29
USP54-208ENST00000461520 ABCC8Q09428 1581 aa13.2□□□□□ -0.3
USP54-208ENST00000461520 APLP1P51693 650 aa13.2□□□□□ -0.3
USP54-208ENST00000461520 TMEM134Q9H6X4 195 aa13.2□□□□□ -0.3
USP54-208ENST00000461520 IFT140Q96RY7 1462 aa13.2□□□□□ -0.3
USP54-208ENST00000461520 TOPBP1Q92547 1522 aa13.19□□□□□ -0.3
USP54-208ENST00000461520 ZNF608Q9ULD9 1512 aaPredicted RBP13.19□□□□□ -0.3
USP54-208ENST00000461520 KCNC4Q03721 635 aa13.19□□□□□ -0.3
USP54-208ENST00000461520 A0A0G2JS52 829 aa13.18□□□□□ -0.3
USP54-208ENST00000461520 PXYLP1Q8TE99 480 aa13.18□□□□□ -0.3
USP54-208ENST00000461520 OATP04181 439 aa13.17□□□□□ -0.3
USP54-208ENST00000461520 SLC4A3P48751 1232 aa13.16□□□□□ -0.3
USP54-208ENST00000461520 TJAP1Q5JTD0 557 aa13.16□□□□□ -0.3
USP54-208ENST00000461520 DNMBPQ6XZF7 1577 aa13.15□□□□□ -0.3
USP54-208ENST00000461520 METTL3Q86U44 580 aaKnown RBP13.15□□□□□ -0.3
USP54-208ENST00000461520 MTRQ99707 1265 aa13.15□□□□□ -0.3
USP54-208ENST00000461520 ARHGEF11O15085 1522 aa13.14□□□□□ -0.31
USP54-208ENST00000461520 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.14□□□□□ -0.31
USP54-208ENST00000461520 TULP1O00294 542 aaPredicted RBP13.14□□□□□ -0.31
USP54-208ENST00000461520 EIF4G3O43432 1585 aaKnown RBP13.13□□□□□ -0.31
USP54-208ENST00000461520 NECTIN2Q92692 538 aa13.12□□□□□ -0.31
USP54-208ENST00000461520 NLRP7Q8WX94 980 aa13.11□□□□□ -0.31
USP54-208ENST00000461520 ZNF516Q92618 1163 aa13.11□□□□□ -0.31
USP54-208ENST00000461520 IL21Q9HBE4 155 aa13.1□□□□□ -0.31
USP54-208ENST00000461520 CHD1O14646 1710 aa13.09□□□□□ -0.31
USP54-208ENST00000461520 COPS2P61201 443 aa13.09□□□□□ -0.31
USP54-208ENST00000461520 SLC10A3P09131 477 aa13.08□□□□□ -0.32
USP54-208ENST00000461520 PHOX2BQ99453 314 aa13.08□□□□□ -0.32
USP54-208ENST00000461520 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.07□□□□□ -0.32
USP54-208ENST00000461520 POLA1P09884 1462 aaPredicted RBP13.07□□□□□ -0.32
USP54-208ENST00000461520 TARBP1Q13395 1621 aaKnown RBP13.06□□□□□ -0.32
USP54-208ENST00000461520 AQRO60306 1485 aaKnown RBP eCLIP13.04□□□□□ -0.322e-6■■■□□ 15.2
USP54-208ENST00000461520 CFHP08603 1231 aa13.04□□□□□ -0.32
USP54-208ENST00000461520 CYB5RLQ6IPT4 315 aa13.04□□□□□ -0.32
USP54-208ENST00000461520 NKX2-3Q8TAU0 364 aa13.04□□□□□ -0.32
USP54-208ENST00000461520 PCDHB3Q9Y5E6 796 aa13.04□□□□□ -0.32
USP54-208ENST00000461520 PRR14Q9BWN1 585 aa13.03□□□□□ -0.32
USP54-208ENST00000461520 SOGA1O94964 1423 aa13.02□□□□□ -0.33
USP54-208ENST00000461520 RGS20O76081 388 aa13.01□□□□□ -0.33
USP54-208ENST00000461520 KMT5BQ4FZB7 885 aa13.01□□□□□ -0.33
USP54-208ENST00000461520 BLOC1S3Q6QNY0 202 aa13.01□□□□□ -0.33
USP54-208ENST00000461520 DAXXQ9UER7 740 aaPredicted RBP13.01□□□□□ -0.33
USP54-208ENST00000461520 RAD54L2Q9Y4B4 1467 aa13□□□□□ -0.33
USP54-208ENST00000461520 SUPT5HO00267 1087 aaKnown RBP13□□□□□ -0.33
USP54-208ENST00000461520 ACTN4O43707 911 aaKnown RBP13□□□□□ -0.33
USP54-208ENST00000461520 MAP2K5Q13163 448 aa13□□□□□ -0.33
USP54-208ENST00000461520 LMOD2Q6P5Q4 547 aa13□□□□□ -0.33
USP54-208ENST00000461520 FGD5Q6ZNL6 1462 aa12.99□□□□□ -0.33
USP54-208ENST00000461520 ARAP1Q96P48 1450 aa12.99□□□□□ -0.33
USP54-208ENST00000461520 DDX11L8A8MPP1 907 aa12.98□□□□□ -0.33
USP54-208ENST00000461520 IRF6O14896 467 aa12.98□□□□□ -0.33
USP54-208ENST00000461520 ZPR1O75312 459 aa12.98□□□□□ -0.33
USP54-208ENST00000461520 WDR97A6NE52 1622 aa12.98□□□□□ -0.33
USP54-208ENST00000461520 CUX1P39880 1505 aa12.98□□□□□ -0.33
USP54-208ENST00000461520 TDRD9Q8NDG6 1382 aaKnown RBP12.97□□□□□ -0.33
USP54-208ENST00000461520 RSPH4AQ5TD94 716 aa12.97□□□□□ -0.33
USP54-208ENST00000461520 PPP1R18Q6NYC8 613 aa12.97□□□□□ -0.33
USP54-208ENST00000461520 RDH13Q8NBN7 331 aa12.96□□□□□ -0.33
USP54-208ENST00000461520 MINK1Q8N4C8 1332 aaPredicted RBP12.95□□□□□ -0.34
USP54-208ENST00000461520 TLL1O43897 1013 aa12.92□□□□□ -0.34
USP54-208ENST00000461520 PUS10Q3MIT2 529 aaKnown RBP12.92□□□□□ -0.34
USP54-208ENST00000461520 CCDC102AQ96A19 550 aa12.92□□□□□ -0.34
USP54-208ENST00000461520 SNAPC4Q5SXM2 1469 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms