RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 AEBP2Q6ZN18 517 aaPredicted RBP32.95■■■□□ 2.87
USP54-208ENST00000461520 CHIC1Q5VXU3 224 aa31.66■■■□□ 2.66
USP54-208ENST00000461520 SENP3Q9H4L4 574 aaPredicted RBP27.95■■■□□ 2.06
USP54-208ENST00000461520 PHF23Q9BUL5 403 aaPredicted RBP27.85■■■□□ 2.05
USP54-208ENST00000461520 FOXD1Q16676 465 aa26.06■■□□□ 1.76
USP54-208ENST00000461520 PLPPR3Q6T4P5 718 aa25.48■■□□□ 1.67
USP54-208ENST00000461520 PPP6R1Q9UPN7 881 aa24.75■■□□□ 1.55
USP54-208ENST00000461520 ADRA2BP18089 450 aa24.7■■□□□ 1.54
USP54-208ENST00000461520 PIAS4Q8N2W9 510 aaPredicted RBP24.45■■□□□ 1.5
USP54-208ENST00000461520 MSH5O43196 834 aa24.14■■□□□ 1.45
USP54-208ENST00000461520 POTEDQ86YR6 584 aa22.88■■□□□ 1.25
USP54-208ENST00000461520 MAPK8IP2Q13387 824 aaPredicted RBP22.58■■□□□ 1.21
USP54-208ENST00000461520 SCAF1Q9H7N4 1312 aaKnown RBP22.5■■□□□ 1.19
USP54-208ENST00000461520 PPP4R3CPQ6ZMV5 832 aa22.44■■□□□ 1.18
USP54-208ENST00000461520 DMRT2Q9Y5R5 561 aa22.25■■□□□ 1.15
USP54-208ENST00000461520 CNKSR2Q8WXI2 1034 aa21.87■■□□□ 1.09
USP54-208ENST00000461520 NCBP3Q53F19 620 aaKnown RBP21.66■■□□□ 1.06
USP54-208ENST00000461520 HOXD11P31277 338 aaPredicted RBP21.6■■□□□ 1.05
USP54-208ENST00000461520 RNF216Q9NWF9 866 aaPredicted RBP21.55■■□□□ 1.04
USP54-208ENST00000461520 KCNA4P22459 653 aa21.41■■□□□ 1.02
USP54-208ENST00000461520 DCAF8L1A6NGE4 600 aa21.39■■□□□ 1.01
USP54-208ENST00000461520 NPM3O75607 178 aaKnown RBP21.39■■□□□ 1.01
USP54-208ENST00000461520 DNAJC5BQ9UF47 199 aa20.72■□□□□ 0.91
USP54-208ENST00000461520 RNF39Q9H2S5 420 aa20.68■□□□□ 0.9
USP54-208ENST00000461520 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.62■□□□□ 0.89
USP54-208ENST00000461520 CACNB1Q02641 598 aaPredicted RBP20.51■□□□□ 0.87
USP54-208ENST00000461520 C1QBPQ07021 282 aaKnown RBP20.37■□□□□ 0.85
USP54-208ENST00000461520 SLC4A2P04920 1241 aa20.33■□□□□ 0.85
USP54-208ENST00000461520 SLC4A1APQ9BWU0 796 aaKnown RBP20.27■□□□□ 0.84
USP54-208ENST00000461520 U3KPZ7 1027 aaPredicted RBP20.23■□□□□ 0.83
USP54-208ENST00000461520 SPINK5Q9NQ38 1064 aaPredicted RBP19.85■□□□□ 0.77
USP54-208ENST00000461520 FOXD4L1Q9NU39 408 aa19.78■□□□□ 0.76
USP54-208ENST00000461520 CAPN15O75808 1086 aa19.77■□□□□ 0.76
USP54-208ENST00000461520 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.73■□□□□ 0.75
USP54-208ENST00000461520 MYCNP04198 464 aaPredicted RBP19.73■□□□□ 0.75
USP54-208ENST00000461520 HNRNPUL2Q1KMD3 747 aaKnown RBP19.73■□□□□ 0.75
USP54-208ENST00000461520 ZBTB22O15209 634 aa19.7■□□□□ 0.74
USP54-208ENST00000461520 SAMD1Q6SPF0 538 aaPredicted RBP19.67■□□□□ 0.74
USP54-208ENST00000461520 APLP2Q06481 763 aa19.62■□□□□ 0.73
USP54-208ENST00000461520 TRHP20396 242 aaPredicted RBP19.57■□□□□ 0.72
USP54-208ENST00000461520 DSG3P32926 999 aa19.53■□□□□ 0.72
USP54-208ENST00000461520 ZNF219Q9P2Y4 722 aaPredicted RBP19.47■□□□□ 0.71
USP54-208ENST00000461520 ABCB7O75027 752 aa19.38■□□□□ 0.69
USP54-208ENST00000461520 ATF5Q9Y2D1 282 aaPredicted RBP19.33■□□□□ 0.68
USP54-208ENST00000461520 EHMT2Q96KQ7 1210 aa19.21■□□□□ 0.67
USP54-208ENST00000461520 CSRNP3Q8WYN3 585 aa19.18■□□□□ 0.66
USP54-208ENST00000461520 POLA2Q14181 598 aa19.14■□□□□ 0.65
USP54-208ENST00000461520 ATXN8OSP0DMR3 200 aa19.09■□□□□ 0.65
USP54-208ENST00000461520 ZBTB12Q9Y330 459 aaPredicted RBP18.69■□□□□ 0.58
USP54-208ENST00000461520 RBM42Q9BTD8 480 aaKnown RBP18.56■□□□□ 0.56
USP54-208ENST00000461520 OSCARQ8IYS5 282 aa18.5■□□□□ 0.55
USP54-208ENST00000461520 FBLN2P98095 1184 aa18.47■□□□□ 0.55
USP54-208ENST00000461520 MKRN4PQ13434 485 aaPredicted RBP18.44■□□□□ 0.54
USP54-208ENST00000461520 AKT1S1Q96B36 256 aa18.26■□□□□ 0.51
USP54-208ENST00000461520 SPDYE2BA6NHP3 402 aa18.18■□□□□ 0.5
USP54-208ENST00000461520 SPDYE6P0CI01 402 aa18.18■□□□□ 0.5
USP54-208ENST00000461520 SPDYE2Q495Y8 402 aa18.18■□□□□ 0.5
USP54-208ENST00000461520 REM2Q8IYK8 340 aaPredicted RBP18.13■□□□□ 0.49
USP54-208ENST00000461520 ZNF692Q9BU19 519 aaPredicted RBP18.08■□□□□ 0.48
USP54-208ENST00000461520 CHRDL2Q6WN34 429 aa18.03■□□□□ 0.48
USP54-208ENST00000461520 POTEHQ6S545 545 aa18.01■□□□□ 0.47
USP54-208ENST00000461520 SSUH2Q9Y2M2 353 aa18■□□□□ 0.47
USP54-208ENST00000461520 NISCHQ9Y2I1 1504 aa17.96■□□□□ 0.47
USP54-208ENST00000461520 PITPNM1O00562 1244 aa17.93■□□□□ 0.46
USP54-208ENST00000461520 PABPN1Q86U42 306 aaKnown RBP eCLIP17.85■□□□□ 0.45
USP54-208ENST00000461520 SPDYE4A6NLX3 237 aa17.78■□□□□ 0.44
USP54-208ENST00000461520 CLEC11AQ9Y240 323 aa17.78■□□□□ 0.44
USP54-208ENST00000461520 SPDYE1Q8NFV5 336 aaPredicted RBP17.77■□□□□ 0.44
USP54-208ENST00000461520 PIP4P2Q8N4L2 257 aa17.72■□□□□ 0.43
USP54-208ENST00000461520 FXR2P51116 673 aaKnown RBP eCLIP17.66■□□□□ 0.42
USP54-208ENST00000461520 PRR29P0C7W0 189 aa17.52■□□□□ 0.4
USP54-208ENST00000461520 PRKAR2AP13861 404 aaKnown RBP17.47■□□□□ 0.39
USP54-208ENST00000461520 CHADLQ6NUI6 762 aa17.41■□□□□ 0.38
USP54-208ENST00000461520 FKBP8Q14318 412 aa17.38■□□□□ 0.37
USP54-208ENST00000461520 PROM2Q8N271 834 aa17.38■□□□□ 0.37
USP54-208ENST00000461520 STAG3Q9UJ98 1225 aa17.38■□□□□ 0.37
USP54-208ENST00000461520 HAX1O00165 279 aa17.29■□□□□ 0.36
USP54-208ENST00000461520 CREBZFQ9NS37 354 aa17.2■□□□□ 0.34
USP54-208ENST00000461520 EVX2Q03828 476 aa17.15■□□□□ 0.34
USP54-208ENST00000461520 FARP1Q9Y4F1 1045 aaPredicted RBP17.15■□□□□ 0.34
USP54-208ENST00000461520 C19orf67A6NJJ6 358 aa17.08■□□□□ 0.32
USP54-208ENST00000461520 SP7Q8TDD2 431 aaPredicted RBP17.07■□□□□ 0.32
USP54-208ENST00000461520 MNX1P50219 401 aaPredicted RBP16.95■□□□□ 0.3
USP54-208ENST00000461520 CD44P16070 742 aaKnown RBP16.94■□□□□ 0.3
USP54-208ENST00000461520 MIER1Q8N108 512 aa16.93■□□□□ 0.3
USP54-208ENST00000461520 NPM1P06748 294 aaKnown RBP eCLIP16.86■□□□□ 0.29
USP54-208ENST00000461520 PLCD3Q8N3E9 789 aa16.84■□□□□ 0.29
USP54-208ENST00000461520 PLEKHG5O94827 1062 aa16.81■□□□□ 0.28
USP54-208ENST00000461520 FBXO3Q9UK99 471 aa16.81■□□□□ 0.28
USP54-208ENST00000461520 ZRANB1Q9UGI0 708 aa16.78■□□□□ 0.28
USP54-208ENST00000461520 GABBR2O75899 941 aa16.74■□□□□ 0.27
USP54-208ENST00000461520 PAK3O75914 559 aaPredicted RBP16.69■□□□□ 0.26
USP54-208ENST00000461520 ZNF579Q8NAF0 562 aaKnown RBP16.66■□□□□ 0.26
USP54-208ENST00000461520 VASPP50552 380 aaPredicted RBP16.64■□□□□ 0.25
USP54-208ENST00000461520 TSPYL2Q9H2G4 693 aaPredicted RBP16.64■□□□□ 0.25
USP54-208ENST00000461520 PHF12Q96QT6 1004 aa16.61■□□□□ 0.25
USP54-208ENST00000461520 ZBTB47Q9UFB7 747 aaPredicted RBP16.6■□□□□ 0.25
USP54-208ENST00000461520 RASEFQ8IZ41 740 aa16.59■□□□□ 0.25
USP54-208ENST00000461520 NUBP1P53384 320 aa16.54■□□□□ 0.24
USP54-208ENST00000461520 CLCN6P51797 869 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms