RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 FOXD1Q16676 465 aa27.84■■■□□ 2.05
USP39-209ENST00000458268 ZNF326Q5BKZ1 582 aaKnown RBP27.83■■■□□ 2.05
USP39-209ENST00000458268 STRCP1A6NGW2 1772 aa27.82■■■□□ 2.04
USP39-209ENST00000458268 SLC26A8Q96RN1 970 aa27.82■■■□□ 2.04
USP39-209ENST00000458268 TRPM2O94759 1503 aa27.82■■■□□ 2.04
USP39-209ENST00000458268 CPS1P31327 1500 aa27.81■■■□□ 2.04
USP39-209ENST00000458268 KIF1BO60333 1816 aa27.81■■■□□ 2.04
USP39-209ENST00000458268 ZFYVE9O95405 1425 aa27.79■■■□□ 2.04
USP39-209ENST00000458268 HDGFP51858 240 aaKnown RBP27.79■■■□□ 2.04
USP39-209ENST00000458268 RAB3GAP2Q9H2M9 1393 aa27.78■■■□□ 2.04
USP39-209ENST00000458268 IQSEC2Q5JU85 1478 aa27.76■■■□□ 2.03
USP39-209ENST00000458268 UBAP1LF5GYI3 381 aa27.75■■■□□ 2.03
USP39-209ENST00000458268 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.75■■■□□ 2.03
USP39-209ENST00000458268 MPHOSPH9Q99550 1183 aa27.75■■■□□ 2.03
USP39-209ENST00000458268 PLEKHG1Q9ULL1 1385 aa27.72■■■□□ 2.03
USP39-209ENST00000458268 SCAF1Q9H7N4 1312 aaKnown RBP27.71■■■□□ 2.03
USP39-209ENST00000458268 LRRC7Q96NW7 1537 aa27.67■■■□□ 2.02
USP39-209ENST00000458268 CCDC144AA2RUR9 1427 aa27.65■■■□□ 2.02
USP39-209ENST00000458268 PIP4K2BP78356 416 aa27.64■■■□□ 2.02
USP39-209ENST00000458268 NEXMIFQ5QGS0 1516 aa27.62■■■□□ 2.01
USP39-209ENST00000458268 RBM33Q96EV2 1170 aaKnown RBP27.62■■■□□ 2.01
USP39-209ENST00000458268 ACIN1Q9UKV3 1341 aaKnown RBP27.62■■■□□ 2.01
USP39-209ENST00000458268 KCNA6P17658 529 aa27.61■■■□□ 2.01
USP39-209ENST00000458268 XIRP1Q702N8 1843 aaKnown RBP27.6■■■□□ 2.01
USP39-209ENST00000458268 PROSER2Q86WR7 435 aaPredicted RBP27.6■■■□□ 2.01
USP39-209ENST00000458268 CHD2O14647 1828 aaKnown RBP27.59■■■□□ 2.01
USP39-209ENST00000458268 ADAMTS13Q76LX8 1427 aa27.58■■■□□ 2.01
USP39-209ENST00000458268 DIP2AQ14689 1571 aa27.58■■■□□ 2.01
USP39-209ENST00000458268 RGL3Q3MIN7 710 aa27.58■■■□□ 2.01
USP39-209ENST00000458268 NWD1Q149M9 1564 aa27.57■■■□□ 2
USP39-209ENST00000458268 TOM1O60784 492 aa27.57■■■□□ 2
USP39-209ENST00000458268 TBX22Q9Y458 520 aa27.56■■■□□ 2
USP39-209ENST00000458268 NRXN3Q9Y4C0 1643 aa27.56■■■□□ 2
USP39-209ENST00000458268 TMEM94Q12767 1356 aa27.55■■■□□ 2
USP39-209ENST00000458268 PPLO60437 1756 aa27.55■■■□□ 2
USP39-209ENST00000458268 NKTRP30414 1462 aaKnown RBP27.52■■■□□ 2
USP39-209ENST00000458268 SETBP1Q9Y6X0 1596 aa27.52■■■□□ 2
USP39-209ENST00000458268 C14orf37Q86TY3 774 aa27.5■■□□□ 1.99
USP39-209ENST00000458268 VGFO15240 615 aaPredicted RBP27.49■■□□□ 1.99
USP39-209ENST00000458268 RPGRIP1LQ68CZ1 1315 aa27.47■■□□□ 1.99
USP39-209ENST00000458268 AMOTL2Q9Y2J4 779 aa27.46■■□□□ 1.99
USP39-209ENST00000458268 ALKQ9UM73 1620 aa27.45■■□□□ 1.99
USP39-209ENST00000458268 PTPRUQ92729 1446 aa27.45■■□□□ 1.98
USP39-209ENST00000458268 SPATA31E1Q6ZUB1 1445 aa27.44■■□□□ 1.98
USP39-209ENST00000458268 METP08581 1390 aa27.44■■□□□ 1.98
USP39-209ENST00000458268 IFT172Q9UG01 1749 aa27.44■■□□□ 1.98
USP39-209ENST00000458268 PIK3R4Q99570 1358 aa27.43■■□□□ 1.98
USP39-209ENST00000458268 HRCP23327 699 aa27.42■■□□□ 1.98
USP39-209ENST00000458268 MSH6P52701 1360 aa27.42■■□□□ 1.98
USP39-209ENST00000458268 ADGRF5Q8IZF2 1346 aa27.4■■□□□ 1.98
USP39-209ENST00000458268 XRN1Q8IZH2 1706 aaKnown RBP27.39■■□□□ 1.98
USP39-209ENST00000458268 SETD1AO15047 1707 aaKnown RBP27.38■■□□□ 1.97
USP39-209ENST00000458268 ANKRD30BQ9BXX2 1392 aa27.37■■□□□ 1.97
USP39-209ENST00000458268 HSPA1LP34931 641 aa27.37■■□□□ 1.97
USP39-209ENST00000458268 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.32■■□□□ 1.96
USP39-209ENST00000458268 KDM2AQ9Y2K7 1162 aa27.29■■□□□ 1.96
USP39-209ENST00000458268 ROBO1Q9Y6N7 1651 aa27.29■■□□□ 1.96
USP39-209ENST00000458268 ATF3P18847 181 aa27.28■■□□□ 1.96
USP39-209ENST00000458268 STK26Q9P289 416 aa27.28■■□□□ 1.96
USP39-209ENST00000458268 TRIM26Q12899 539 aaPredicted RBP27.26■■□□□ 1.95
USP39-209ENST00000458268 TMEM132EQ6IEE7 984 aa27.25■■□□□ 1.95
USP39-209ENST00000458268 C19orf44Q9H6X5 657 aa27.25■■□□□ 1.95
USP39-209ENST00000458268 PIK3C2GO75747 1445 aa27.24■■□□□ 1.95
USP39-209ENST00000458268 NCOA3Q9Y6Q9 1424 aa27.24■■□□□ 1.95
USP39-209ENST00000458268 NALCNQ8IZF0 1738 aa27.24■■□□□ 1.95
USP39-209ENST00000458268 DCAF11Q8TEB1 546 aa27.24■■□□□ 1.95
USP39-209ENST00000458268 SLAIN2Q9P270 581 aa27.24■■□□□ 1.95
USP39-209ENST00000458268 MYOM2P54296 1465 aa27.23■■□□□ 1.95
USP39-209ENST00000458268 ROBO2Q9HCK4 1378 aa27.22■■□□□ 1.95
USP39-209ENST00000458268 CADPS2Q86UW7 1296 aa27.21■■□□□ 1.95
USP39-209ENST00000458268 ASXL1Q8IXJ9 1541 aa27.21■■□□□ 1.95
USP39-209ENST00000458268 CFAP70Q5T0N1 1121 aa27.2■■□□□ 1.94
USP39-209ENST00000458268 PTCH1Q13635 1447 aa27.19■■□□□ 1.94
USP39-209ENST00000458268 FAM135BQ49AJ0 1406 aa27.19■■□□□ 1.94
USP39-209ENST00000458268 ADGRL3Q9HAR2 1447 aa27.18■■□□□ 1.94
USP39-209ENST00000458268 LAMC1P11047 1609 aa27.18■■□□□ 1.94
USP39-209ENST00000458268 DISP3Q9P2K9 1392 aa27.18■■□□□ 1.94
USP39-209ENST00000458268 PHLPP1O60346 1717 aa27.16■■□□□ 1.94
USP39-209ENST00000458268 NRXN1Q9ULB1 1477 aa27.15■■□□□ 1.94
USP39-209ENST00000458268 LRPPRCP42704 1394 aaKnown RBP27.13■■□□□ 1.93
USP39-209ENST00000458268 C14orf93Q9H972 538 aaKnown RBP27.13■■□□□ 1.93
USP39-209ENST00000458268 YTHDC2Q9H6S0 1430 aaKnown RBP27.13■■□□□ 1.93
USP39-209ENST00000458268 KNDC1Q76NI1 1749 aa27.13■■□□□ 1.93
USP39-209ENST00000458268 WAPLQ7Z5K2 1190 aa27.12■■□□□ 1.93
USP39-209ENST00000458268 DCCP43146 1447 aa27.12■■□□□ 1.93
USP39-209ENST00000458268 DHX57Q6P158 1386 aaKnown RBP27.11■■□□□ 1.93
USP39-209ENST00000458268 NEUROD1Q13562 356 aa27.11■■□□□ 1.93
USP39-209ENST00000458268 SIN3AQ96ST3 1273 aa27.09■■□□□ 1.93
USP39-209ENST00000458268 MST1RQ04912 1400 aa27.08■■□□□ 1.93
USP39-209ENST00000458268 PLEKHH1Q9ULM0 1364 aa27.08■■□□□ 1.93
USP39-209ENST00000458268 SAFB2Q14151 953 aaKnown RBP eCLIP27.07■■□□□ 1.92
USP39-209ENST00000458268 PRAG1Q86YV5 1406 aa27.07■■□□□ 1.92
USP39-209ENST00000458268 MED1Q15648 1581 aaPredicted RBP27.06■■□□□ 1.92
USP39-209ENST00000458268 BRINP3Q76B58 766 aa27.05■■□□□ 1.92
USP39-209ENST00000458268 ABCC11Q96J66 1382 aa27.05■■□□□ 1.92
USP39-209ENST00000458268 TECPR2O15040 1411 aa27.05■■□□□ 1.92
USP39-209ENST00000458268 NUTM2FA1L443 756 aa27.04■■□□□ 1.92
USP39-209ENST00000458268 TRAK1Q9UPV9 953 aa27.02■■□□□ 1.92
USP39-209ENST00000458268 POGKQ9P215 609 aa27.01■■□□□ 1.91
USP39-209ENST00000458268 PRAM1Q96QH2 718 aa27■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms