RNA–Protein interactions for RNA: ENST00000446225.5

MCF2-206, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-206ENST00000446225 AQRO60306 1485 aaKnown RBP eCLIP9.56□□□□□ -0.88
MCF2-206ENST00000446225 TARBP1Q13395 1621 aaKnown RBP9.55□□□□□ -0.88
MCF2-206ENST00000446225 RFX1P22670 979 aa9.55□□□□□ -0.88
MCF2-206ENST00000446225 FBXO31Q5XUX0 539 aaPredicted RBP9.55□□□□□ -0.88
MCF2-206ENST00000446225 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.55□□□□□ -0.88
MCF2-206ENST00000446225 TOP2BQ02880 1626 aa9.55□□□□□ -0.88
MCF2-206ENST00000446225 CARNS1A5YM72 827 aa9.54□□□□□ -0.88
MCF2-206ENST00000446225 RSPH4AQ5TD94 716 aa9.54□□□□□ -0.88
MCF2-206ENST00000446225 ILDR1Q86SU0 546 aaPredicted RBP9.54□□□□□ -0.88
MCF2-206ENST00000446225 PRM3Q9NNZ6 103 aa9.54□□□□□ -0.88
MCF2-206ENST00000446225 MICALL2Q8IY33 904 aa9.53□□□□□ -0.88
MCF2-206ENST00000446225 BIVM-ERCC5R4GMW8 1640 aa9.53□□□□□ -0.88
MCF2-206ENST00000446225 TBC1D2BQ9UPU7 963 aa9.52□□□□□ -0.88
MCF2-206ENST00000446225 PPP2R2DQ66LE6 453 aa9.52□□□□□ -0.89
MCF2-206ENST00000446225 C2orf72A6NCS6 295 aa9.51□□□□□ -0.89
MCF2-206ENST00000446225 TBC1D2Q9BYX2 928 aa9.51□□□□□ -0.89
MCF2-206ENST00000446225 PRKAR2AP13861 404 aaKnown RBP9.5□□□□□ -0.89
MCF2-206ENST00000446225 CDHR5Q9HBB8 845 aa9.5□□□□□ -0.89
MCF2-206ENST00000446225 NPDC1Q9NQX5 325 aaPredicted RBP9.5□□□□□ -0.89
MCF2-206ENST00000446225 UNCXA6NJT0 531 aa9.5□□□□□ -0.89
MCF2-206ENST00000446225 NLRP7Q8WX94 980 aa9.5□□□□□ -0.89
MCF2-206ENST00000446225 ABCA10Q8WWZ4 1543 aa9.5□□□□□ -0.89
MCF2-206ENST00000446225 CFAP70Q5T0N1 1121 aa9.49□□□□□ -0.89
MCF2-206ENST00000446225 HDGFL1Q5TGJ6 251 aa9.49□□□□□ -0.89
MCF2-206ENST00000446225 LIMD1Q9UGP4 676 aa9.49□□□□□ -0.89
MCF2-206ENST00000446225 SRPK2P78362 688 aaKnown RBP9.48□□□□□ -0.89
MCF2-206ENST00000446225 DIXDC1Q155Q3 683 aa9.48□□□□□ -0.89
MCF2-206ENST00000446225 EIF4G3O43432 1585 aaKnown RBP9.48□□□□□ -0.89
MCF2-206ENST00000446225 DPY19L2Q6NUT2 758 aa9.48□□□□□ -0.89
MCF2-206ENST00000446225 SOCS7O14512 581 aa9.47□□□□□ -0.89
MCF2-206ENST00000446225 KIF3CO14782 793 aa9.46□□□□□ -0.89
MCF2-206ENST00000446225 METTL3Q86U44 580 aaKnown RBP9.46□□□□□ -0.89
MCF2-206ENST00000446225 ADAMTS19Q8TE59 1207 aa9.46□□□□□ -0.89
MCF2-206ENST00000446225 GAPVD1Q14C86 1478 aa9.46□□□□□ -0.89
MCF2-206ENST00000446225 VRTNQ9H8Y1 702 aa9.46□□□□□ -0.9
MCF2-206ENST00000446225 TRPC6Q9Y210 931 aa9.46□□□□□ -0.9
MCF2-206ENST00000446225 EVI5O60447 810 aa9.45□□□□□ -0.9
MCF2-206ENST00000446225 FAM161AQ3B820 660 aa9.45□□□□□ -0.9
MCF2-206ENST00000446225 GRIN2BQ13224 1484 aa9.45□□□□□ -0.9
MCF2-206ENST00000446225 PHF12Q96QT6 1004 aa9.44□□□□□ -0.9
MCF2-206ENST00000446225 WDR97A6NE52 1622 aa9.44□□□□□ -0.9
MCF2-206ENST00000446225 PPP1R12CQ9BZL4 782 aa9.44□□□□□ -0.9
MCF2-206ENST00000446225 IGSF5Q9NSI5 407 aa9.44□□□□□ -0.9
MCF2-206ENST00000446225 RIC3Q7Z5B4 369 aa9.43□□□□□ -0.9
MCF2-206ENST00000446225 FAM177A1Q8N128 213 aaPredicted RBP9.43□□□□□ -0.9
MCF2-206ENST00000446225 SNAPC4Q5SXM2 1469 aa9.43□□□□□ -0.9
MCF2-206ENST00000446225 RBM47A0AV96 593 aaKnown RBP9.43□□□□□ -0.9
MCF2-206ENST00000446225 MAP3K7O43318 606 aa9.43□□□□□ -0.9
MCF2-206ENST00000446225 EN1Q05925 392 aaPredicted RBP9.43□□□□□ -0.9
MCF2-206ENST00000446225 CHMP7Q8WUX9 453 aaPredicted RBP9.43□□□□□ -0.9
MCF2-206ENST00000446225 ABCA5Q8WWZ7 1642 aa9.42□□□□□ -0.9
MCF2-206ENST00000446225 OATP04181 439 aa9.42□□□□□ -0.9
MCF2-206ENST00000446225 ZRANB1Q9UGI0 708 aa9.42□□□□□ -0.9
MCF2-206ENST00000446225 AP1G2O75843 785 aa9.41□□□□□ -0.9
MCF2-206ENST00000446225 KIF27Q86VH2 1401 aa9.4□□□□□ -0.9
MCF2-206ENST00000446225 IGF1RP08069 1367 aa9.4□□□□□ -0.9
MCF2-206ENST00000446225 TMEM88BA6NKF7 163 aa9.4□□□□□ -0.9
MCF2-206ENST00000446225 MAGI1Q96QZ7 1491 aaPredicted RBP9.4□□□□□ -0.91
MCF2-206ENST00000446225 LMOD1P29536 600 aaPredicted RBP9.39□□□□□ -0.91
MCF2-206ENST00000446225 CSPP1Q1MSJ5 1256 aa9.39□□□□□ -0.91
MCF2-206ENST00000446225 GNEQ9Y223 722 aaKnown RBP9.39□□□□□ -0.91
MCF2-206ENST00000446225 RUSC2Q8N2Y8 1516 aa9.39□□□□□ -0.91
MCF2-206ENST00000446225 PALM3A6NDB9 673 aaPredicted RBP9.39□□□□□ -0.91
MCF2-206ENST00000446225 WASHC4Q2M389 1173 aa9.38□□□□□ -0.91
MCF2-206ENST00000446225 ZNF710Q8N1W2 664 aa9.38□□□□□ -0.91
MCF2-206ENST00000446225 PXYLP1Q8TE99 480 aa9.38□□□□□ -0.91
MCF2-206ENST00000446225 NDUFB9Q9Y6M9 179 aa9.38□□□□□ -0.91
MCF2-206ENST00000446225 PBRM1Q86U86 1689 aa9.37□□□□□ -0.91
MCF2-206ENST00000446225 SYNJ2O15056 1496 aa9.37□□□□□ -0.91
MCF2-206ENST00000446225 USP17L8P0C7I0 530 aa9.37□□□□□ -0.91
MCF2-206ENST00000446225 TUSC1Q2TAM9 212 aa9.37□□□□□ -0.91
MCF2-206ENST00000446225 SPIRE2Q8WWL2 714 aa9.37□□□□□ -0.91
MCF2-206ENST00000446225 RBM33Q96EV2 1170 aaKnown RBP9.37□□□□□ -0.91
MCF2-206ENST00000446225 QPCTQ16769 361 aa9.37□□□□□ -0.91
MCF2-206ENST00000446225 TSR1Q2NL82 804 aaKnown RBP9.37□□□□□ -0.91
MCF2-206ENST00000446225 ERICH3Q5RHP9 1530 aa9.36□□□□□ -0.91
MCF2-206ENST00000446225 FHAD1B1AJZ9 1412 aa9.36□□□□□ -0.91
MCF2-206ENST00000446225 TTLL13PA6NNM8 815 aa9.36□□□□□ -0.91
MCF2-206ENST00000446225 ATG7O95352 703 aa9.36□□□□□ -0.91
MCF2-206ENST00000446225 MRRFQ96E11 262 aaKnown RBP9.36□□□□□ -0.91
MCF2-206ENST00000446225 MS4A3Q96HJ5 214 aa9.36□□□□□ -0.91
MCF2-206ENST00000446225 KIAA1522Q9P206 1035 aaPredicted RBP9.36□□□□□ -0.91
MCF2-206ENST00000446225 SPTLC1O15269 473 aa9.35□□□□□ -0.91
MCF2-206ENST00000446225 TMEM121BQ9BXQ6 578 aaPredicted RBP9.35□□□□□ -0.91
MCF2-206ENST00000446225 CDCA8Q53HL2 280 aa9.35□□□□□ -0.91
MCF2-206ENST00000446225 RSBN1LQ6PCB5 846 aaPredicted RBP9.35□□□□□ -0.91
MCF2-206ENST00000446225 EPAS1Q99814 870 aa9.35□□□□□ -0.91
MCF2-206ENST00000446225 CHD1O14646 1710 aa9.34□□□□□ -0.91
MCF2-206ENST00000446225 B4GALNT3Q6L9W6 998 aa9.34□□□□□ -0.91
MCF2-206ENST00000446225 GJD4Q96KN9 370 aaPredicted RBP9.34□□□□□ -0.91
MCF2-206ENST00000446225 ADGRG1Q9Y653 693 aa9.34□□□□□ -0.91
MCF2-206ENST00000446225 CARMIL1Q5VZK9 1371 aa9.34□□□□□ -0.92
MCF2-206ENST00000446225 TIE1P35590 1138 aa9.33□□□□□ -0.92
MCF2-206ENST00000446225 TXNDC2Q86VQ3 553 aa9.33□□□□□ -0.92
MCF2-206ENST00000446225 FAM9AQ8IZU1 332 aaPredicted RBP9.33□□□□□ -0.92
MCF2-206ENST00000446225 TFIP11Q9UBB9 837 aaKnown RBP9.33□□□□□ -0.92
MCF2-206ENST00000446225 BOLA1Q9Y3E2 137 aa9.33□□□□□ -0.92
MCF2-206ENST00000446225 ADAMTS12P58397 1594 aa9.33□□□□□ -0.92
MCF2-206ENST00000446225 PHF14O94880 888 aa9.33□□□□□ -0.92
MCF2-206ENST00000446225 VAC14Q08AM6 782 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms