RNA–Protein interactions for RNA: ENST00000446225.5

MCF2-206, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-206ENST00000446225 CHIC1Q5VXU3 224 aa18.29■□□□□ 0.52
MCF2-206ENST00000446225 AEBP2Q6ZN18 517 aaPredicted RBP17.66■□□□□ 0.42
MCF2-206ENST00000446225 PHF23Q9BUL5 403 aaPredicted RBP16.24■□□□□ 0.19
MCF2-206ENST00000446225 PLPPR3Q6T4P5 718 aa15.36■□□□□ 0.05
MCF2-206ENST00000446225 EHMT2Q96KQ7 1210 aa15.12■□□□□ 0.01
MCF2-206ENST00000446225 SENP3Q9H4L4 574 aaPredicted RBP14.76□□□□□ -0.05
MCF2-206ENST00000446225 KCNA4P22459 653 aa14.68□□□□□ -0.06
MCF2-206ENST00000446225 ADRA2BP18089 450 aa14.4□□□□□ -0.1
MCF2-206ENST00000446225 CSRNP3Q8WYN3 585 aa14.37□□□□□ -0.11
MCF2-206ENST00000446225 SLC24A1O60721 1099 aa14.28□□□□□ -0.12
MCF2-206ENST00000446225 SLC4A1APQ9BWU0 796 aaKnown RBP14.16□□□□□ -0.14
MCF2-206ENST00000446225 PPP6R1Q9UPN7 881 aa13.99□□□□□ -0.17
MCF2-206ENST00000446225 RTN4Q9NQC3 1192 aaKnown RBP13.8□□□□□ -0.2
MCF2-206ENST00000446225 AMER1Q5JTC6 1135 aaPredicted RBP13.72□□□□□ -0.21
MCF2-206ENST00000446225 PPP4R3CPQ6ZMV5 832 aa13.68□□□□□ -0.22
MCF2-206ENST00000446225 NCBP3Q53F19 620 aaKnown RBP13.62□□□□□ -0.23
MCF2-206ENST00000446225 FOXD1Q16676 465 aa13.59□□□□□ -0.23
MCF2-206ENST00000446225 ZBTB22O15209 634 aa13.54□□□□□ -0.24
MCF2-206ENST00000446225 NPM3O75607 178 aaKnown RBP13.47□□□□□ -0.25
MCF2-206ENST00000446225 NISCHQ9Y2I1 1504 aa13.33□□□□□ -0.27
MCF2-206ENST00000446225 FOXD4L1Q9NU39 408 aa13.15□□□□□ -0.3
MCF2-206ENST00000446225 PIAS4Q8N2W9 510 aaPredicted RBP13.11□□□□□ -0.31
MCF2-206ENST00000446225 CNKSR2Q8WXI2 1034 aa13.03□□□□□ -0.32
MCF2-206ENST00000446225 FKBP8Q14318 412 aa12.94□□□□□ -0.34
MCF2-206ENST00000446225 DNAJC5BQ9UF47 199 aa12.81□□□□□ -0.36
MCF2-206ENST00000446225 SCAF1Q9H7N4 1312 aaKnown RBP12.78□□□□□ -0.36
MCF2-206ENST00000446225 PLCB2Q00722 1185 aa12.62□□□□□ -0.39
MCF2-206ENST00000446225 PRKCSHP14314 528 aaPredicted RBP12.58□□□□□ -0.39
MCF2-206ENST00000446225 ATXN8OSP0DMR3 200 aa12.55□□□□□ -0.4
MCF2-206ENST00000446225 BCANQ96GW7 911 aa12.53□□□□□ -0.4
MCF2-206ENST00000446225 RNF216Q9NWF9 866 aaPredicted RBP12.5□□□□□ -0.41
MCF2-206ENST00000446225 HAP1P54257 671 aaPredicted RBP12.47□□□□□ -0.41
MCF2-206ENST00000446225 TAOK2Q9UL54 1235 aa12.46□□□□□ -0.42
MCF2-206ENST00000446225 SLC4A2P04920 1241 aa12.44□□□□□ -0.42
MCF2-206ENST00000446225 MAPK8IP2Q13387 824 aaPredicted RBP12.41□□□□□ -0.42
MCF2-206ENST00000446225 MYCNP04198 464 aaPredicted RBP12.39□□□□□ -0.43
MCF2-206ENST00000446225 TPRNQ4KMQ1 711 aa12.26□□□□□ -0.45
MCF2-206ENST00000446225 VSIG10Q8N0Z9 540 aa12.25□□□□□ -0.45
MCF2-206ENST00000446225 DCAF8L2P0C7V8 631 aa12.22□□□□□ -0.45
MCF2-206ENST00000446225 POTEDQ86YR6 584 aa12.2□□□□□ -0.46
MCF2-206ENST00000446225 HOXD11P31277 338 aaPredicted RBP12.14□□□□□ -0.47
MCF2-206ENST00000446225 FBXO3Q9UK99 471 aa12.12□□□□□ -0.47
MCF2-206ENST00000446225 MSH5O43196 834 aa12.05□□□□□ -0.48
MCF2-206ENST00000446225 DAXXQ9UER7 740 aaPredicted RBP12.05□□□□□ -0.48
MCF2-206ENST00000446225 ATF5Q9Y2D1 282 aaPredicted RBP12.03□□□□□ -0.48
MCF2-206ENST00000446225 KDM2AQ9Y2K7 1162 aa12.03□□□□□ -0.48
MCF2-206ENST00000446225 TIMELESSQ9UNS1 1208 aa12.01□□□□□ -0.49
MCF2-206ENST00000446225 FBLN2P98095 1184 aa11.96□□□□□ -0.49
MCF2-206ENST00000446225 DMRT2Q9Y5R5 561 aa11.96□□□□□ -0.5
MCF2-206ENST00000446225 VASPP50552 380 aaPredicted RBP11.95□□□□□ -0.5
MCF2-206ENST00000446225 TULP1O00294 542 aaPredicted RBP11.94□□□□□ -0.5
MCF2-206ENST00000446225 PKD2Q13563 968 aa11.92□□□□□ -0.5
MCF2-206ENST00000446225 ARXQ96QS3 562 aa11.92□□□□□ -0.5
MCF2-206ENST00000446225 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.92□□□□□ -0.5
MCF2-206ENST00000446225 IFNLR1Q8IU57 520 aaPredicted RBP11.89□□□□□ -0.51
MCF2-206ENST00000446225 PAXIP1Q6ZW49 1069 aaPredicted RBP11.86□□□□□ -0.51
MCF2-206ENST00000446225 BBXQ8WY36 941 aaPredicted RBP11.86□□□□□ -0.51
MCF2-206ENST00000446225 SPDYE4A6NLX3 237 aa11.83□□□□□ -0.52
MCF2-206ENST00000446225 CFAP44Q96MT7 982 aa11.83□□□□□ -0.52
MCF2-206ENST00000446225 GTF3C3Q9Y5Q9 886 aa11.8□□□□□ -0.52
MCF2-206ENST00000446225 SAMD1Q6SPF0 538 aaPredicted RBP11.77□□□□□ -0.53
MCF2-206ENST00000446225 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.75□□□□□ -0.53
MCF2-206ENST00000446225 HNRNPUL2Q1KMD3 747 aaKnown RBP11.75□□□□□ -0.53
MCF2-206ENST00000446225 PROM2Q8N271 834 aa11.75□□□□□ -0.53
MCF2-206ENST00000446225 NPM1P06748 294 aaKnown RBP eCLIP11.74□□□□□ -0.53
MCF2-206ENST00000446225 CCDC180Q9P1Z9 1646 aa11.73□□□□□ -0.53
MCF2-206ENST00000446225 ERICH6Q7L0X2 663 aa11.72□□□□□ -0.53
MCF2-206ENST00000446225 TSHZ2Q9NRE2 1034 aa11.69□□□□□ -0.54
MCF2-206ENST00000446225 NBR1Q14596 966 aa11.68□□□□□ -0.54
MCF2-206ENST00000446225 SPRYD3Q8NCJ5 442 aa11.66□□□□□ -0.54
MCF2-206ENST00000446225 ZNF219Q9P2Y4 722 aaPredicted RBP11.66□□□□□ -0.54
MCF2-206ENST00000446225 ECM2O94769 699 aaPredicted RBP11.64□□□□□ -0.55
MCF2-206ENST00000446225 HOMEZQ8IX15 550 aa11.63□□□□□ -0.55
MCF2-206ENST00000446225 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.62□□□□□ -0.55
MCF2-206ENST00000446225 TMEM132AQ24JP5 1023 aa11.56□□□□□ -0.56
MCF2-206ENST00000446225 U3KPZ7 1027 aaPredicted RBP11.55□□□□□ -0.56
MCF2-206ENST00000446225 MKRN4PQ13434 485 aaPredicted RBP11.54□□□□□ -0.56
MCF2-206ENST00000446225 ABCC9O60706 1549 aa11.53□□□□□ -0.56
MCF2-206ENST00000446225 SPOCK2Q92563 424 aa11.52□□□□□ -0.57
MCF2-206ENST00000446225 RGL2O15211 777 aa11.5□□□□□ -0.57
MCF2-206ENST00000446225 KLHL34Q8N239 644 aa11.5□□□□□ -0.57
MCF2-206ENST00000446225 DNAJC5Q9H3Z4 198 aa11.5□□□□□ -0.57
MCF2-206ENST00000446225 C14orf37Q86TY3 774 aa11.48□□□□□ -0.57
MCF2-206ENST00000446225 DCAF8L1A6NGE4 600 aa11.46□□□□□ -0.58
MCF2-206ENST00000446225 CHGAP10645 457 aaKnown RBP11.42□□□□□ -0.58
MCF2-206ENST00000446225 APLP2Q06481 763 aa11.33□□□□□ -0.6
MCF2-206ENST00000446225 PLCD3Q8N3E9 789 aa11.23□□□□□ -0.61
MCF2-206ENST00000446225 HS6ST3Q8IZP7 471 aa11.21□□□□□ -0.61
MCF2-206ENST00000446225 RANGAP1P46060 587 aaPredicted RBP11.2□□□□□ -0.62
MCF2-206ENST00000446225 PODXL2Q9NZ53 605 aa11.19□□□□□ -0.62
MCF2-206ENST00000446225 CIZ1Q9ULV3 898 aaPredicted RBP11.19□□□□□ -0.62
MCF2-206ENST00000446225 SUPT5HO00267 1087 aaKnown RBP11.16□□□□□ -0.62
MCF2-206ENST00000446225 STAG3Q9UJ98 1225 aa11.16□□□□□ -0.62
MCF2-206ENST00000446225 POLA2Q14181 598 aa11.11□□□□□ -0.63
MCF2-206ENST00000446225 MIER1Q8N108 512 aa11.1□□□□□ -0.63
MCF2-206ENST00000446225 ZCCHC6Q5VYS8 1495 aaKnown RBP11.1□□□□□ -0.63
MCF2-206ENST00000446225 NKX1-1Q15270 411 aaPredicted RBP11.07□□□□□ -0.64
MCF2-206ENST00000446225 NACADO15069 1562 aa11.07□□□□□ -0.64
MCF2-206ENST00000446225 RB1CC1Q8TDY2 1594 aa11.06□□□□□ -0.64
MCF2-206ENST00000446225 GTPBP6O43824 516 aaPredicted RBP11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms