RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 RIMS2Q9UQ26 1411 aa29.95■■■□□ 2.38
SHROOM1-204ENST00000440118 HDGFP51858 240 aaKnown RBP29.94■■■□□ 2.38
SHROOM1-204ENST00000440118 SENP3Q9H4L4 574 aaPredicted RBP29.92■■■□□ 2.38
SHROOM1-204ENST00000440118 HFM1A2PYH4 1435 aa29.91■■■□□ 2.38
SHROOM1-204ENST00000440118 ZFYVE9O95405 1425 aa29.91■■■□□ 2.38
SHROOM1-204ENST00000440118 SLC26A8Q96RN1 970 aa29.91■■■□□ 2.38
SHROOM1-204ENST00000440118 TRIM52Q96A61 297 aa29.88■■■□□ 2.37
SHROOM1-204ENST00000440118 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.86■■■□□ 2.37
SHROOM1-204ENST00000440118 XIRP1Q702N8 1843 aaKnown RBP29.86■■■□□ 2.37
SHROOM1-204ENST00000440118 PLEKHG1Q9ULL1 1385 aa29.86■■■□□ 2.37
SHROOM1-204ENST00000440118 NUTM2DQ5VT03 806 aaPredicted RBP29.82■■■□□ 2.36
SHROOM1-204ENST00000440118 NWD1Q149M9 1564 aa29.81■■■□□ 2.36
SHROOM1-204ENST00000440118 KCNA6P17658 529 aa29.81■■■□□ 2.36
SHROOM1-204ENST00000440118 TRPM2O94759 1503 aa29.81■■■□□ 2.36
SHROOM1-204ENST00000440118 KIF1BO60333 1816 aa29.8■■■□□ 2.36
SHROOM1-204ENST00000440118 DISP3Q9P2K9 1392 aa29.8■■■□□ 2.36
SHROOM1-204ENST00000440118 NKTRP30414 1462 aaKnown RBP29.8■■■□□ 2.36
SHROOM1-204ENST00000440118 CLTCL1P53675 1640 aa29.79■■■□□ 2.36
SHROOM1-204ENST00000440118 ALKQ9UM73 1620 aa29.78■■■□□ 2.36
SHROOM1-204ENST00000440118 ZNF326Q5BKZ1 582 aaKnown RBP29.78■■■□□ 2.36
SHROOM1-204ENST00000440118 DIP2AQ14689 1571 aa29.77■■■□□ 2.36
SHROOM1-204ENST00000440118 CHD2O14647 1828 aaKnown RBP29.77■■■□□ 2.36
SHROOM1-204ENST00000440118 TMEM94Q12767 1356 aa29.76■■■□□ 2.35
SHROOM1-204ENST00000440118 HSPA1LP34931 641 aa29.75■■■□□ 2.35
SHROOM1-204ENST00000440118 PROSER2Q86WR7 435 aaPredicted RBP29.75■■■□□ 2.35
SHROOM1-204ENST00000440118 SLC4A1APQ9BWU0 796 aaKnown RBP29.74■■■□□ 2.35
SHROOM1-204ENST00000440118 RBM33Q96EV2 1170 aaKnown RBP29.68■■■□□ 2.34
SHROOM1-204ENST00000440118 TBX22Q9Y458 520 aa29.68■■■□□ 2.34
SHROOM1-204ENST00000440118 ADAMTS13Q76LX8 1427 aa29.68■■■□□ 2.34
SHROOM1-204ENST00000440118 MSH6P52701 1360 aa29.65■■■□□ 2.34
SHROOM1-204ENST00000440118 ILDR2Q71H61 639 aa29.64■■■□□ 2.34
SHROOM1-204ENST00000440118 NEXMIFQ5QGS0 1516 aa29.63■■■□□ 2.33
SHROOM1-204ENST00000440118 C14orf37Q86TY3 774 aa29.63■■■□□ 2.33
SHROOM1-204ENST00000440118 PIK3R4Q99570 1358 aa29.63■■■□□ 2.33
SHROOM1-204ENST00000440118 SETBP1Q9Y6X0 1596 aa29.62■■■□□ 2.33
SHROOM1-204ENST00000440118 NRXN3Q9Y4C0 1643 aa29.62■■■□□ 2.33
SHROOM1-204ENST00000440118 ROBO1Q9Y6N7 1651 aa29.57■■■□□ 2.32
SHROOM1-204ENST00000440118 MED1Q15648 1581 aaPredicted RBP29.56■■■□□ 2.32
SHROOM1-204ENST00000440118 FOXD1Q16676 465 aa29.55■■■□□ 2.32
SHROOM1-204ENST00000440118 SETD5Q9C0A6 1442 aa29.54■■■□□ 2.32
SHROOM1-204ENST00000440118 CCDC144AA2RUR9 1427 aa29.53■■■□□ 2.32
SHROOM1-204ENST00000440118 PPLO60437 1756 aa29.52■■■□□ 2.32
SHROOM1-204ENST00000440118 ACIN1Q9UKV3 1341 aaKnown RBP29.52■■■□□ 2.32
SHROOM1-204ENST00000440118 XRN1Q8IZH2 1706 aaKnown RBP29.52■■■□□ 2.32
SHROOM1-204ENST00000440118 AMOTL2Q9Y2J4 779 aa29.52■■■□□ 2.32
SHROOM1-204ENST00000440118 FAM135BQ49AJ0 1406 aa29.52■■■□□ 2.32
SHROOM1-204ENST00000440118 MPHOSPH9Q99550 1183 aa29.51■■■□□ 2.31
SHROOM1-204ENST00000440118 NCOA3Q9Y6Q9 1424 aa29.5■■■□□ 2.31
SHROOM1-204ENST00000440118 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.49■■■□□ 2.31
SHROOM1-204ENST00000440118 PTPRUQ92729 1446 aa29.49■■■□□ 2.31
SHROOM1-204ENST00000440118 VGFO15240 615 aaPredicted RBP29.47■■■□□ 2.31
SHROOM1-204ENST00000440118 RPGRIP1LQ68CZ1 1315 aa29.45■■■□□ 2.31
SHROOM1-204ENST00000440118 METP08581 1390 aa29.45■■■□□ 2.31
SHROOM1-204ENST00000440118 SLAIN2Q9P270 581 aa29.45■■■□□ 2.31
SHROOM1-204ENST00000440118 ATF3P18847 181 aa29.44■■■□□ 2.3
SHROOM1-204ENST00000440118 PHLPP1O60346 1717 aa29.43■■■□□ 2.3
SHROOM1-204ENST00000440118 PHF23Q9BUL5 403 aaPredicted RBP29.43■■■□□ 2.3
SHROOM1-204ENST00000440118 RAB3GAP2Q9H2M9 1393 aa29.42■■■□□ 2.3
SHROOM1-204ENST00000440118 CADPS2Q86UW7 1296 aa29.42■■■□□ 2.3
SHROOM1-204ENST00000440118 SETD1AO15047 1707 aaKnown RBP29.41■■■□□ 2.3
SHROOM1-204ENST00000440118 C19orf44Q9H6X5 657 aa29.41■■■□□ 2.3
SHROOM1-204ENST00000440118 IFT172Q9UG01 1749 aa29.37■■■□□ 2.29
SHROOM1-204ENST00000440118 RGL3Q3MIN7 710 aa29.37■■■□□ 2.29
SHROOM1-204ENST00000440118 DCCP43146 1447 aa29.35■■■□□ 2.29
SHROOM1-204ENST00000440118 SOCS7O14512 581 aa29.34■■■□□ 2.29
SHROOM1-204ENST00000440118 NALCNQ8IZF0 1738 aa29.34■■■□□ 2.29
SHROOM1-204ENST00000440118 SPATA31E1Q6ZUB1 1445 aa29.33■■■□□ 2.29
SHROOM1-204ENST00000440118 ANKRD30BQ9BXX2 1392 aa29.31■■■□□ 2.28
SHROOM1-204ENST00000440118 PTCH1Q13635 1447 aa29.3■■■□□ 2.28
SHROOM1-204ENST00000440118 ADGRL3Q9HAR2 1447 aa29.3■■■□□ 2.28
SHROOM1-204ENST00000440118 COL16A1Q07092 1604 aaPredicted RBP29.27■■■□□ 2.28
SHROOM1-204ENST00000440118 ADGRF5Q8IZF2 1346 aa29.25■■■□□ 2.27
SHROOM1-204ENST00000440118 AHDC1Q5TGY3 1603 aaPredicted RBP29.25■■■□□ 2.27
SHROOM1-204ENST00000440118 JCADQ9P266 1359 aa29.23■■■□□ 2.27
SHROOM1-204ENST00000440118 MST1RQ04912 1400 aa29.22■■■□□ 2.27
SHROOM1-204ENST00000440118 ASXL1Q8IXJ9 1541 aa29.22■■■□□ 2.27
SHROOM1-204ENST00000440118 ROBO2Q9HCK4 1378 aa29.22■■■□□ 2.27
SHROOM1-204ENST00000440118 PRAG1Q86YV5 1406 aa29.2■■■□□ 2.26
SHROOM1-204ENST00000440118 BRINP3Q76B58 766 aa29.19■■■□□ 2.26
SHROOM1-204ENST00000440118 PIK3C2GO75747 1445 aa29.19■■■□□ 2.26
SHROOM1-204ENST00000440118 LAMC1P11047 1609 aa29.17■■■□□ 2.26
SHROOM1-204ENST00000440118 KNDC1Q76NI1 1749 aa29.16■■■□□ 2.26
SHROOM1-204ENST00000440118 NHSL1Q5SYE7 1610 aa29.16■■■□□ 2.26
SHROOM1-204ENST00000440118 STK26Q9P289 416 aa29.15■■■□□ 2.26
SHROOM1-204ENST00000440118 MYOM2P54296 1465 aa29.15■■■□□ 2.26
SHROOM1-204ENST00000440118 SHPRHQ149N8 1683 aa29.15■■■□□ 2.26
SHROOM1-204ENST00000440118 HRCP23327 699 aa29.11■■■□□ 2.25
SHROOM1-204ENST00000440118 LRPPRCP42704 1394 aaKnown RBP29.11■■■□□ 2.25
SHROOM1-204ENST00000440118 CDC42BPGQ6DT37 1551 aa29.09■■■□□ 2.25
SHROOM1-204ENST00000440118 TMEM132EQ6IEE7 984 aa29.09■■■□□ 2.25
SHROOM1-204ENST00000440118 C1orf167Q5SNV9 1468 aa29.09■■■□□ 2.25
SHROOM1-204ENST00000440118 MEX3CQ5U5Q3 659 aaKnown RBP29.08■■■□□ 2.25
SHROOM1-204ENST00000440118 TECPR2O15040 1411 aa29.08■■■□□ 2.25
SHROOM1-204ENST00000440118 SPATA31A6Q5VVP1 1343 aa29.07■■■□□ 2.24
SHROOM1-204ENST00000440118 YTHDC2Q9H6S0 1430 aaKnown RBP29.07■■■□□ 2.24
SHROOM1-204ENST00000440118 NRXN1Q9ULB1 1477 aa29.07■■■□□ 2.24
SHROOM1-204ENST00000440118 ABCC11Q96J66 1382 aa29.03■■■□□ 2.24
SHROOM1-204ENST00000440118 C14orf93Q9H972 538 aaKnown RBP29.02■■■□□ 2.24
SHROOM1-204ENST00000440118 DHX57Q6P158 1386 aaKnown RBP29.01■■■□□ 2.24
SHROOM1-204ENST00000440118 CFAP70Q5T0N1 1121 aa29.01■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms