RNA–Protein interactions for RNA: ENST00000430682.5

SMPD4-204, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 820 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-204ENST00000430682 RIMS2Q9UQ26 1411 aa18.99■□□□□ 0.63
SMPD4-204ENST00000430682 CHGAP10645 457 aaKnown RBP18.97■□□□□ 0.63
SMPD4-204ENST00000430682 CHD2O14647 1828 aaKnown RBP18.96■□□□□ 0.63
SMPD4-204ENST00000430682 NUTM2DQ5VT03 806 aaPredicted RBP18.96■□□□□ 0.63
SMPD4-204ENST00000430682 CLTCL1P53675 1640 aa18.96■□□□□ 0.63
SMPD4-204ENST00000430682 PIP4K2BP78356 416 aa18.93■□□□□ 0.62
SMPD4-204ENST00000430682 PLEKHG1Q9ULL1 1385 aa18.93■□□□□ 0.62
SMPD4-204ENST00000430682 NWD1Q149M9 1564 aa18.92■□□□□ 0.62
SMPD4-204ENST00000430682 RBM33Q96EV2 1170 aaKnown RBP18.91■□□□□ 0.62
SMPD4-204ENST00000430682 KIF1BO60333 1816 aa18.9■□□□□ 0.62
SMPD4-204ENST00000430682 TRPM2O94759 1503 aa18.9■□□□□ 0.62
SMPD4-204ENST00000430682 TOM1O60784 492 aa18.9■□□□□ 0.62
SMPD4-204ENST00000430682 KCNA6P17658 529 aa18.9■□□□□ 0.62
SMPD4-204ENST00000430682 ADAMTS13Q76LX8 1427 aa18.9■□□□□ 0.62
SMPD4-204ENST00000430682 TRIM52Q96A61 297 aa18.89■□□□□ 0.61
SMPD4-204ENST00000430682 SCAF1Q9H7N4 1312 aaKnown RBP18.89■□□□□ 0.61
SMPD4-204ENST00000430682 NRXN3Q9Y4C0 1643 aa18.89■□□□□ 0.61
SMPD4-204ENST00000430682 HSPA1LP34931 641 aa18.88■□□□□ 0.61
SMPD4-204ENST00000430682 BCANQ96GW7 911 aa18.88■□□□□ 0.61
SMPD4-204ENST00000430682 PPP1R15AO75807 674 aaPredicted RBP18.87■□□□□ 0.61
SMPD4-204ENST00000430682 TMEM94Q12767 1356 aa18.87■□□□□ 0.61
SMPD4-204ENST00000430682 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.85■□□□□ 0.61
SMPD4-204ENST00000430682 FOXD1Q16676 465 aa18.84■□□□□ 0.61
SMPD4-204ENST00000430682 TBX22Q9Y458 520 aa18.84■□□□□ 0.61
SMPD4-204ENST00000430682 NEXMIFQ5QGS0 1516 aa18.84■□□□□ 0.61
SMPD4-204ENST00000430682 NKTRP30414 1462 aaKnown RBP18.84■□□□□ 0.61
SMPD4-204ENST00000430682 HDGFP51858 240 aaKnown RBP18.83■□□□□ 0.6
SMPD4-204ENST00000430682 PROSER2Q86WR7 435 aaPredicted RBP18.83■□□□□ 0.6
SMPD4-204ENST00000430682 SLC4A1APQ9BWU0 796 aaKnown RBP18.83■□□□□ 0.6
SMPD4-204ENST00000430682 PTPRUQ92729 1446 aa18.82■□□□□ 0.6
SMPD4-204ENST00000430682 DIP2AQ14689 1571 aa18.81■□□□□ 0.6
SMPD4-204ENST00000430682 SETBP1Q9Y6X0 1596 aa18.81■□□□□ 0.6
SMPD4-204ENST00000430682 ZNF326Q5BKZ1 582 aaKnown RBP18.8■□□□□ 0.6
SMPD4-204ENST00000430682 DISP3Q9P2K9 1392 aa18.79■□□□□ 0.6
SMPD4-204ENST00000430682 PPLO60437 1756 aa18.78■□□□□ 0.6
SMPD4-204ENST00000430682 SETD1AO15047 1707 aaKnown RBP18.77■□□□□ 0.6
SMPD4-204ENST00000430682 XRN1Q8IZH2 1706 aaKnown RBP18.77■□□□□ 0.59
SMPD4-204ENST00000430682 MPHOSPH9Q99550 1183 aa18.76■□□□□ 0.59
SMPD4-204ENST00000430682 ROBO1Q9Y6N7 1651 aa18.76■□□□□ 0.59
SMPD4-204ENST00000430682 SETD5Q9C0A6 1442 aa18.75■□□□□ 0.59
SMPD4-204ENST00000430682 ILDR2Q71H61 639 aa18.75■□□□□ 0.59
SMPD4-204ENST00000430682 METP08581 1390 aa18.75■□□□□ 0.59
SMPD4-204ENST00000430682 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.74■□□□□ 0.59
SMPD4-204ENST00000430682 PIK3R4Q99570 1358 aa18.74■□□□□ 0.59
SMPD4-204ENST00000430682 AMOTL2Q9Y2J4 779 aa18.73■□□□□ 0.59
SMPD4-204ENST00000430682 IFT172Q9UG01 1749 aa18.72■□□□□ 0.59
SMPD4-204ENST00000430682 MED1Q15648 1581 aaPredicted RBP18.72■□□□□ 0.59
SMPD4-204ENST00000430682 RAB3GAP2Q9H2M9 1393 aa18.71■□□□□ 0.59
SMPD4-204ENST00000430682 FAM135BQ49AJ0 1406 aa18.71■□□□□ 0.59
SMPD4-204ENST00000430682 MSH6P52701 1360 aa18.69■□□□□ 0.58
SMPD4-204ENST00000430682 SPATA31E1Q6ZUB1 1445 aa18.69■□□□□ 0.58
SMPD4-204ENST00000430682 NCOA3Q9Y6Q9 1424 aa18.66■□□□□ 0.58
SMPD4-204ENST00000430682 SLAIN2Q9P270 581 aa18.66■□□□□ 0.58
SMPD4-204ENST00000430682 NALCNQ8IZF0 1738 aa18.66■□□□□ 0.58
SMPD4-204ENST00000430682 CCDC144AA2RUR9 1427 aa18.66■□□□□ 0.58
SMPD4-204ENST00000430682 RPGRIP1LQ68CZ1 1315 aa18.65■□□□□ 0.58
SMPD4-204ENST00000430682 PHLPP1O60346 1717 aa18.64■□□□□ 0.57
SMPD4-204ENST00000430682 VGFO15240 615 aaPredicted RBP18.64■□□□□ 0.57
SMPD4-204ENST00000430682 RGL3Q3MIN7 710 aa18.64■□□□□ 0.57
SMPD4-204ENST00000430682 ADGRF5Q8IZF2 1346 aa18.64■□□□□ 0.57
SMPD4-204ENST00000430682 C14orf37Q86TY3 774 aa18.63■□□□□ 0.57
SMPD4-204ENST00000430682 C19orf44Q9H6X5 657 aa18.62■□□□□ 0.57
SMPD4-204ENST00000430682 COL16A1Q07092 1604 aaPredicted RBP18.6■□□□□ 0.57
SMPD4-204ENST00000430682 ROBO2Q9HCK4 1378 aa18.59■□□□□ 0.57
SMPD4-204ENST00000430682 ASXL1Q8IXJ9 1541 aa18.59■□□□□ 0.57
SMPD4-204ENST00000430682 ATF3P18847 181 aa18.57■□□□□ 0.56
SMPD4-204ENST00000430682 MST1RQ04912 1400 aa18.57■□□□□ 0.56
SMPD4-204ENST00000430682 ADGRL3Q9HAR2 1447 aa18.57■□□□□ 0.56
SMPD4-204ENST00000430682 CADPS2Q86UW7 1296 aa18.56■□□□□ 0.56
SMPD4-204ENST00000430682 ANKRD30BQ9BXX2 1392 aa18.55■□□□□ 0.56
SMPD4-204ENST00000430682 DCCP43146 1447 aa18.55■□□□□ 0.56
SMPD4-204ENST00000430682 PTCH1Q13635 1447 aa18.55■□□□□ 0.56
SMPD4-204ENST00000430682 PRAG1Q86YV5 1406 aa18.55■□□□□ 0.56
SMPD4-204ENST00000430682 ACIN1Q9UKV3 1341 aaKnown RBP18.54■□□□□ 0.56
SMPD4-204ENST00000430682 AHDC1Q5TGY3 1603 aaPredicted RBP18.54■□□□□ 0.56
SMPD4-204ENST00000430682 PIK3C2GO75747 1445 aa18.54■□□□□ 0.56
SMPD4-204ENST00000430682 BRINP3Q76B58 766 aa18.53■□□□□ 0.56
SMPD4-204ENST00000430682 NHSL1Q5SYE7 1610 aa18.52■□□□□ 0.56
SMPD4-204ENST00000430682 TMEM132EQ6IEE7 984 aa18.52■□□□□ 0.56
SMPD4-204ENST00000430682 RGS17Q9UGC6 210 aaPredicted RBP18.52■□□□□ 0.56
SMPD4-204ENST00000430682 HRCP23327 699 aa18.51■□□□□ 0.55
SMPD4-204ENST00000430682 KNDC1Q76NI1 1749 aa18.51■□□□□ 0.55
SMPD4-204ENST00000430682 NRXN1Q9ULB1 1477 aa18.51■□□□□ 0.55
SMPD4-204ENST00000430682 DDX17Q92841 729 aaKnown RBP18.49■□□□□ 0.55
SMPD4-204ENST00000430682 STK26Q9P289 416 aa18.49■□□□□ 0.55
SMPD4-204ENST00000430682 SHPRHQ149N8 1683 aa18.47■□□□□ 0.55
SMPD4-204ENST00000430682 MYOM2P54296 1465 aa18.47■□□□□ 0.55
SMPD4-204ENST00000430682 PLEKHH1Q9ULM0 1364 aa18.47■□□□□ 0.55
SMPD4-204ENST00000430682 SOCS7O14512 581 aa18.47■□□□□ 0.55
SMPD4-204ENST00000430682 WAPLQ7Z5K2 1190 aa18.47■□□□□ 0.55
SMPD4-204ENST00000430682 TECPR2O15040 1411 aa18.47■□□□□ 0.55
SMPD4-204ENST00000430682 C1orf167Q5SNV9 1468 aa18.46■□□□□ 0.55
SMPD4-204ENST00000430682 LRPPRCP42704 1394 aaKnown RBP18.46■□□□□ 0.55
SMPD4-204ENST00000430682 JCADQ9P266 1359 aa18.46■□□□□ 0.55
SMPD4-204ENST00000430682 CFAP70Q5T0N1 1121 aa18.46■□□□□ 0.55
SMPD4-204ENST00000430682 C14orf93Q9H972 538 aaKnown RBP18.46■□□□□ 0.55
SMPD4-204ENST00000430682 LRP6O75581 1613 aa18.45■□□□□ 0.54
SMPD4-204ENST00000430682 PHF23Q9BUL5 403 aaPredicted RBP18.45■□□□□ 0.54
SMPD4-204ENST00000430682 ABCC11Q96J66 1382 aa18.44■□□□□ 0.54
SMPD4-204ENST00000430682 YTHDC2Q9H6S0 1430 aaKnown RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms