RNA–Protein interactions for RNA: ENST00000430071.6

UBE3D-204, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 5

Gene UBE3D, Length 1,352 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-204ENST00000430071 PIP4K2BP78356 416 aa25.66■■□□□ 1.7
UBE3D-204ENST00000430071 RIMS2Q9UQ26 1411 aa25.64■■□□□ 1.7
UBE3D-204ENST00000430071 NUTM2DQ5VT03 806 aaPredicted RBP25.63■■□□□ 1.69
UBE3D-204ENST00000430071 SCAF1Q9H7N4 1312 aaKnown RBP25.63■■□□□ 1.69
UBE3D-204ENST00000430071 CHD2O14647 1828 aaKnown RBP25.61■■□□□ 1.69
UBE3D-204ENST00000430071 TOM1O60784 492 aa25.59■■□□□ 1.69
UBE3D-204ENST00000430071 HFM1A2PYH4 1435 aa25.58■■□□□ 1.69
UBE3D-204ENST00000430071 RBM33Q96EV2 1170 aaKnown RBP25.57■■□□□ 1.68
UBE3D-204ENST00000430071 CLTCL1P53675 1640 aa25.57■■□□□ 1.68
UBE3D-204ENST00000430071 BCANQ96GW7 911 aa25.56■■□□□ 1.68
UBE3D-204ENST00000430071 HSPA1LP34931 641 aa25.56■■□□□ 1.68
UBE3D-204ENST00000430071 PLEKHG1Q9ULL1 1385 aa25.55■■□□□ 1.68
UBE3D-204ENST00000430071 KCNA6P17658 529 aa25.54■■□□□ 1.68
UBE3D-204ENST00000430071 NWD1Q149M9 1564 aa25.54■■□□□ 1.68
UBE3D-204ENST00000430071 PPP1R15AO75807 674 aaPredicted RBP25.53■■□□□ 1.68
UBE3D-204ENST00000430071 TRIM52Q96A61 297 aa25.53■■□□□ 1.68
UBE3D-204ENST00000430071 KIF1BO60333 1816 aa25.52■■□□□ 1.68
UBE3D-204ENST00000430071 ADAMTS13Q76LX8 1427 aa25.5■■□□□ 1.67
UBE3D-204ENST00000430071 TMEM94Q12767 1356 aa25.5■■□□□ 1.67
UBE3D-204ENST00000430071 DISP3Q9P2K9 1392 aa25.49■■□□□ 1.67
UBE3D-204ENST00000430071 TRPM2O94759 1503 aa25.48■■□□□ 1.67
UBE3D-204ENST00000430071 PROSER2Q86WR7 435 aaPredicted RBP25.48■■□□□ 1.67
UBE3D-204ENST00000430071 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.47■■□□□ 1.67
UBE3D-204ENST00000430071 NRXN3Q9Y4C0 1643 aa25.47■■□□□ 1.67
UBE3D-204ENST00000430071 HDGFP51858 240 aaKnown RBP25.46■■□□□ 1.67
UBE3D-204ENST00000430071 TBX22Q9Y458 520 aa25.44■■□□□ 1.66
UBE3D-204ENST00000430071 FOXD1Q16676 465 aa25.44■■□□□ 1.66
UBE3D-204ENST00000430071 NKTRP30414 1462 aaKnown RBP25.43■■□□□ 1.66
UBE3D-204ENST00000430071 ILDR2Q71H61 639 aa25.43■■□□□ 1.66
UBE3D-204ENST00000430071 ZNF326Q5BKZ1 582 aaKnown RBP25.42■■□□□ 1.66
UBE3D-204ENST00000430071 SLC4A1APQ9BWU0 796 aaKnown RBP25.42■■□□□ 1.66
UBE3D-204ENST00000430071 NEXMIFQ5QGS0 1516 aa25.41■■□□□ 1.66
UBE3D-204ENST00000430071 DIP2AQ14689 1571 aa25.4■■□□□ 1.66
UBE3D-204ENST00000430071 PTPRUQ92729 1446 aa25.4■■□□□ 1.66
UBE3D-204ENST00000430071 SETBP1Q9Y6X0 1596 aa25.36■■□□□ 1.65
UBE3D-204ENST00000430071 ROBO1Q9Y6N7 1651 aa25.36■■□□□ 1.65
UBE3D-204ENST00000430071 PPLO60437 1756 aa25.34■■□□□ 1.65
UBE3D-204ENST00000430071 MED1Q15648 1581 aaPredicted RBP25.33■■□□□ 1.65
UBE3D-204ENST00000430071 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.33■■□□□ 1.65
UBE3D-204ENST00000430071 XRN1Q8IZH2 1706 aaKnown RBP25.32■■□□□ 1.64
UBE3D-204ENST00000430071 AMOTL2Q9Y2J4 779 aa25.31■■□□□ 1.64
UBE3D-204ENST00000430071 SETD1AO15047 1707 aaKnown RBP25.31■■□□□ 1.64
UBE3D-204ENST00000430071 METP08581 1390 aa25.3■■□□□ 1.64
UBE3D-204ENST00000430071 FAM135BQ49AJ0 1406 aa25.3■■□□□ 1.64
UBE3D-204ENST00000430071 MSH6P52701 1360 aa25.3■■□□□ 1.64
UBE3D-204ENST00000430071 PIK3R4Q99570 1358 aa25.3■■□□□ 1.64
UBE3D-204ENST00000430071 MPHOSPH9Q99550 1183 aa25.3■■□□□ 1.64
UBE3D-204ENST00000430071 SETD5Q9C0A6 1442 aa25.27■■□□□ 1.64
UBE3D-204ENST00000430071 SLAIN2Q9P270 581 aa25.24■■□□□ 1.63
UBE3D-204ENST00000430071 IFT172Q9UG01 1749 aa25.23■■□□□ 1.63
UBE3D-204ENST00000430071 C14orf37Q86TY3 774 aa25.22■■□□□ 1.63
UBE3D-204ENST00000430071 PHLPP1O60346 1717 aa25.22■■□□□ 1.63
UBE3D-204ENST00000430071 NCOA3Q9Y6Q9 1424 aa25.21■■□□□ 1.63
UBE3D-204ENST00000430071 RAB3GAP2Q9H2M9 1393 aa25.2■■□□□ 1.62
UBE3D-204ENST00000430071 NALCNQ8IZF0 1738 aa25.18■■□□□ 1.62
UBE3D-204ENST00000430071 CCDC144AA2RUR9 1427 aa25.18■■□□□ 1.62
UBE3D-204ENST00000430071 RGL3Q3MIN7 710 aa25.18■■□□□ 1.62
UBE3D-204ENST00000430071 C19orf44Q9H6X5 657 aa25.18■■□□□ 1.62
UBE3D-204ENST00000430071 SPATA31E1Q6ZUB1 1445 aa25.17■■□□□ 1.62
UBE3D-204ENST00000430071 VGFO15240 615 aaPredicted RBP25.17■■□□□ 1.62
UBE3D-204ENST00000430071 RPGRIP1LQ68CZ1 1315 aa25.16■■□□□ 1.62
UBE3D-204ENST00000430071 ADGRF5Q8IZF2 1346 aa25.14■■□□□ 1.62
UBE3D-204ENST00000430071 COL16A1Q07092 1604 aaPredicted RBP25.12■■□□□ 1.61
UBE3D-204ENST00000430071 ATF3P18847 181 aa25.12■■□□□ 1.61
UBE3D-204ENST00000430071 TRIM26Q12899 539 aaPredicted RBP25.11■■□□□ 1.61
UBE3D-204ENST00000430071 CADPS2Q86UW7 1296 aa25.11■■□□□ 1.61
UBE3D-204ENST00000430071 ROBO2Q9HCK4 1378 aa25.09■■□□□ 1.61
UBE3D-204ENST00000430071 MST1RQ04912 1400 aa25.06■■□□□ 1.6
UBE3D-204ENST00000430071 ADGRL3Q9HAR2 1447 aa25.06■■□□□ 1.6
UBE3D-204ENST00000430071 BRINP3Q76B58 766 aa25.05■■□□□ 1.6
UBE3D-204ENST00000430071 AHDC1Q5TGY3 1603 aaPredicted RBP25.05■■□□□ 1.6
UBE3D-204ENST00000430071 ASXL1Q8IXJ9 1541 aa25.05■■□□□ 1.6
UBE3D-204ENST00000430071 DCCP43146 1447 aa25.05■■□□□ 1.6
UBE3D-204ENST00000430071 SOCS7O14512 581 aa25.05■■□□□ 1.6
UBE3D-204ENST00000430071 PHF23Q9BUL5 403 aaPredicted RBP25.05■■□□□ 1.6
UBE3D-204ENST00000430071 RGS17Q9UGC6 210 aaPredicted RBP25.05■■□□□ 1.6
UBE3D-204ENST00000430071 PTCH1Q13635 1447 aa25.03■■□□□ 1.6
UBE3D-204ENST00000430071 NHSL1Q5SYE7 1610 aa25.01■■□□□ 1.59
UBE3D-204ENST00000430071 ANKRD30BQ9BXX2 1392 aa25■■□□□ 1.59
UBE3D-204ENST00000430071 TMEM132EQ6IEE7 984 aa25■■□□□ 1.59
UBE3D-204ENST00000430071 DDX17Q92841 729 aaKnown RBP25■■□□□ 1.59
UBE3D-204ENST00000430071 ACIN1Q9UKV3 1341 aaKnown RBP24.99■■□□□ 1.59
UBE3D-204ENST00000430071 PIK3C2GO75747 1445 aa24.99■■□□□ 1.59
UBE3D-204ENST00000430071 PRAG1Q86YV5 1406 aa24.99■■□□□ 1.59
UBE3D-204ENST00000430071 STK26Q9P289 416 aa24.98■■□□□ 1.59
UBE3D-204ENST00000430071 SHPRHQ149N8 1683 aa24.97■■□□□ 1.59
UBE3D-204ENST00000430071 JCADQ9P266 1359 aa24.97■■□□□ 1.59
UBE3D-204ENST00000430071 KNDC1Q76NI1 1749 aa24.97■■□□□ 1.59
UBE3D-204ENST00000430071 WAPLQ7Z5K2 1190 aa24.94■■□□□ 1.58
UBE3D-204ENST00000430071 LRP6O75581 1613 aa24.94■■□□□ 1.58
UBE3D-204ENST00000430071 C1orf167Q5SNV9 1468 aa24.94■■□□□ 1.58
UBE3D-204ENST00000430071 NRXN1Q9ULB1 1477 aa24.93■■□□□ 1.58
UBE3D-204ENST00000430071 PLEKHH1Q9ULM0 1364 aa24.93■■□□□ 1.58
UBE3D-204ENST00000430071 LRPPRCP42704 1394 aaKnown RBP24.92■■□□□ 1.58
UBE3D-204ENST00000430071 HRCP23327 699 aa24.92■■□□□ 1.58
UBE3D-204ENST00000430071 CFAP70Q5T0N1 1121 aa24.92■■□□□ 1.58
UBE3D-204ENST00000430071 ORAI2Q96SN7 254 aa24.91■■□□□ 1.58
UBE3D-204ENST00000430071 MYOM2P54296 1465 aa24.9■■□□□ 1.58
UBE3D-204ENST00000430071 TECPR2O15040 1411 aa24.9■■□□□ 1.58
UBE3D-204ENST00000430071 RGPD8O14715 1765 aaPredicted RBP24.9■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms