RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 LAPTM4BQ86VI4 370 aa5.12□□□□□ -1.59
VPS13A-208ENST00000423463 ANKK1Q8NFD2 765 aa5.12□□□□□ -1.59
VPS13A-208ENST00000423463 LRCH3Q96II8 777 aa5.12□□□□□ -1.59
VPS13A-208ENST00000423463 TMEM134Q9H6X4 195 aa5.12□□□□□ -1.59
VPS13A-208ENST00000423463 THSD4Q6ZMP0 1018 aa5.11□□□□□ -1.59
VPS13A-208ENST00000423463 REPIN1Q9BWE0 567 aaKnown RBP5.11□□□□□ -1.59
VPS13A-208ENST00000423463 TTLL12Q14166 644 aaPredicted RBP5.11□□□□□ -1.59
VPS13A-208ENST00000423463 CDKN2AIPQ9NXV6 580 aaPredicted RBP5.11□□□□□ -1.59
VPS13A-208ENST00000423463 SOWAHBA6NEL2 793 aa5.1□□□□□ -1.59
VPS13A-208ENST00000423463 TRIM66O15016 1216 aa5.1□□□□□ -1.59
VPS13A-208ENST00000423463 AK7Q96M32 723 aa5.1□□□□□ -1.59
VPS13A-208ENST00000423463 WBP1LQ9NX94 342 aa5.1□□□□□ -1.59
VPS13A-208ENST00000423463 HPS5Q9UPZ3 1129 aa5.1□□□□□ -1.59
VPS13A-208ENST00000423463 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.09□□□□□ -1.59
VPS13A-208ENST00000423463 DDX11L8A8MPP1 907 aa5.09□□□□□ -1.6
VPS13A-208ENST00000423463 HDGFP51858 240 aaKnown RBP5.09□□□□□ -1.6
VPS13A-208ENST00000423463 PARP9Q8IXQ6 854 aa5.09□□□□□ -1.6
VPS13A-208ENST00000423463 GPBP1L1Q9HC44 474 aaPredicted RBP5.09□□□□□ -1.6
VPS13A-208ENST00000423463 SLC10A3P09131 477 aa5.08□□□□□ -1.6
VPS13A-208ENST00000423463 PDE4DQ08499 809 aa5.08□□□□□ -1.6
VPS13A-208ENST00000423463 GIGYF2Q6Y7W6 1299 aaKnown RBP5.07□□□□□ -1.6
VPS13A-208ENST00000423463 RDH13Q8NBN7 331 aa5.07□□□□□ -1.6
VPS13A-208ENST00000423463 GPCPD1Q9NPB8 672 aa5.07□□□□□ -1.6
VPS13A-208ENST00000423463 AMHR2Q16671 573 aa5.07□□□□□ -1.6
VPS13A-208ENST00000423463 DAXXQ9UER7 740 aaPredicted RBP5.07□□□□□ -1.6
VPS13A-208ENST00000423463 PPP4CP60510 307 aa5.06□□□□□ -1.6
VPS13A-208ENST00000423463 SLF2Q8IX21 1173 aa5.06□□□□□ -1.6
VPS13A-208ENST00000423463 TSR3Q9UJK0 312 aaKnown RBP5.06□□□□□ -1.6
VPS13A-208ENST00000423463 CLCN1P35523 988 aa5.06□□□□□ -1.6
VPS13A-208ENST00000423463 RBAK-RBAKDNI3L0D1 243 aa5.05□□□□□ -1.6
VPS13A-208ENST00000423463 CFHP08603 1231 aa5.05□□□□□ -1.6
VPS13A-208ENST00000423463 APLP1P51693 650 aa5.05□□□□□ -1.6
VPS13A-208ENST00000423463 FAM217BQ9NTX9 383 aaPredicted RBP5.05□□□□□ -1.6
VPS13A-208ENST00000423463 MS4A1P11836 297 aa5.04□□□□□ -1.6
VPS13A-208ENST00000423463 TMUB1Q9BVT8 246 aa5.04□□□□□ -1.6
VPS13A-208ENST00000423463 SLC4A3P48751 1232 aa5.04□□□□□ -1.6
VPS13A-208ENST00000423463 HCSTQ9UBK5 93 aa5.04□□□□□ -1.6
VPS13A-208ENST00000423463 ABCC9O60706 1549 aa5.03□□□□□ -1.6
VPS13A-208ENST00000423463 SSTR3P32745 418 aaPredicted RBP5.03□□□□□ -1.6
VPS13A-208ENST00000423463 NEUROD2Q15784 382 aa5.03□□□□□ -1.6
VPS13A-208ENST00000423463 PUS10Q3MIT2 529 aaKnown RBP5.03□□□□□ -1.6
VPS13A-208ENST00000423463 SULF1Q8IWU6 871 aa5.03□□□□□ -1.6
VPS13A-208ENST00000423463 CD46P15529 392 aa5.03□□□□□ -1.6
VPS13A-208ENST00000423463 BRPF1P55201 1214 aaPredicted RBP5.03□□□□□ -1.6
VPS13A-208ENST00000423463 FUT2Q10981 343 aa5.03□□□□□ -1.6
VPS13A-208ENST00000423463 KDM4CQ9H3R0 1056 aa5.03□□□□□ -1.6
VPS13A-208ENST00000423463 COPS2P61201 443 aa5.02□□□□□ -1.61
VPS13A-208ENST00000423463 HLA-CQ95604 372 aa5.02□□□□□ -1.61
VPS13A-208ENST00000423463 BEGAINQ9BUH8 593 aa5.02□□□□□ -1.61
VPS13A-208ENST00000423463 FAM117AQ9C073 453 aa5.01□□□□□ -1.61
VPS13A-208ENST00000423463 GCGRP47871 477 aa5□□□□□ -1.61
VPS13A-208ENST00000423463 GUCA2AQ02747 115 aa5□□□□□ -1.61
VPS13A-208ENST00000423463 BLOC1S3Q6QNY0 202 aa5□□□□□ -1.61
VPS13A-208ENST00000423463 MTRQ99707 1265 aa5□□□□□ -1.61
VPS13A-208ENST00000423463 PCDHB3Q9Y5E6 796 aa5□□□□□ -1.61
VPS13A-208ENST00000423463 KMT5BQ4FZB7 885 aa4.99□□□□□ -1.61
VPS13A-208ENST00000423463 KDM4AO75164 1064 aa4.99□□□□□ -1.61
VPS13A-208ENST00000423463 RSPH4AQ5TD94 716 aa4.99□□□□□ -1.61
VPS13A-208ENST00000423463 ZNF516Q92618 1163 aa4.99□□□□□ -1.61
VPS13A-208ENST00000423463 ACTN4O43707 911 aaKnown RBP4.98□□□□□ -1.61
VPS13A-208ENST00000423463 TLL1O43897 1013 aa4.98□□□□□ -1.61
VPS13A-208ENST00000423463 NYAP1Q6ZVC0 841 aa4.98□□□□□ -1.61
VPS13A-208ENST00000423463 NECTIN2Q92692 538 aa4.98□□□□□ -1.61
VPS13A-208ENST00000423463 TJAP1Q5JTD0 557 aa4.97□□□□□ -1.61
VPS13A-208ENST00000423463 HOXA2O43364 376 aa4.97□□□□□ -1.61
VPS13A-208ENST00000423463 NUTM1Q86Y26 1132 aa4.97□□□□□ -1.61
VPS13A-208ENST00000423463 IL27Q8NEV9 243 aa4.97□□□□□ -1.61
VPS13A-208ENST00000423463 SPIRE2Q8WWL2 714 aa4.97□□□□□ -1.61
VPS13A-208ENST00000423463 PLEKHG3A1L390 1219 aa4.96□□□□□ -1.61
VPS13A-208ENST00000423463 NDUFV2P19404 249 aa4.96□□□□□ -1.61
VPS13A-208ENST00000423463 NKX2-3Q8TAU0 364 aa4.96□□□□□ -1.61
VPS13A-208ENST00000423463 PRR14Q9BWN1 585 aa4.96□□□□□ -1.61
VPS13A-208ENST00000423463 SLC27A5Q9Y2P5 690 aa4.96□□□□□ -1.61
VPS13A-208ENST00000423463 MOXD2PA6NHM9 499 aa4.96□□□□□ -1.62
VPS13A-208ENST00000423463 ATP6V1AP38606 617 aa4.96□□□□□ -1.62
VPS13A-208ENST00000423463 TBC1D2Q9BYX2 928 aa4.96□□□□□ -1.62
VPS13A-208ENST00000423463 MORN1Q5T089 497 aa4.95□□□□□ -1.62
VPS13A-208ENST00000423463 PLA2G2EQ9NZK7 142 aa4.95□□□□□ -1.62
VPS13A-208ENST00000423463 CSPP1Q1MSJ5 1256 aa4.95□□□□□ -1.62
VPS13A-208ENST00000423463 RNF19BQ6ZMZ0 732 aa4.95□□□□□ -1.62
VPS13A-208ENST00000423463 SCUBE3Q8IX30 993 aa4.95□□□□□ -1.62
VPS13A-208ENST00000423463 SYMPKQ92797 1274 aaKnown RBP4.95□□□□□ -1.62
VPS13A-208ENST00000423463 MYSM1Q5VVJ2 828 aa4.95□□□□□ -1.62
VPS13A-208ENST00000423463 POLR3EQ9NVU0 708 aa4.95□□□□□ -1.62
VPS13A-208ENST00000423463 ZPR1O75312 459 aa4.94□□□□□ -1.62
VPS13A-208ENST00000423463 ITGBL1O95965 494 aaPredicted RBP4.94□□□□□ -1.62
VPS13A-208ENST00000423463 IL21Q9HBE4 155 aa4.94□□□□□ -1.62
VPS13A-208ENST00000423463 PCDHGC3Q9UN70 934 aa4.94□□□□□ -1.62
VPS13A-208ENST00000423463 KCNC4Q03721 635 aa4.94□□□□□ -1.62
VPS13A-208ENST00000423463 DDRGK1Q96HY6 314 aa4.93□□□□□ -1.62
VPS13A-208ENST00000423463 LIMD1Q9UGP4 676 aa4.93□□□□□ -1.62
VPS13A-208ENST00000423463 PCDHB15Q9Y5E8 787 aa4.93□□□□□ -1.62
VPS13A-208ENST00000423463 FDX1P10109 184 aa4.93□□□□□ -1.62
VPS13A-208ENST00000423463 PRDM9Q9NQV7 894 aa4.93□□□□□ -1.62
VPS13A-208ENST00000423463 NR1I2O75469 434 aa4.92□□□□□ -1.62
VPS13A-208ENST00000423463 USP46P62068 366 aa4.92□□□□□ -1.62
VPS13A-208ENST00000423463 GRIPAP1Q4V328 841 aa4.92□□□□□ -1.62
VPS13A-208ENST00000423463 RSBN1LQ6PCB5 846 aaPredicted RBP4.92□□□□□ -1.62
VPS13A-208ENST00000423463 ATP1B4Q9UN42 357 aaPredicted RBP4.92□□□□□ -1.62
VPS13A-208ENST00000423463 QPCTQ16769 361 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms