RNA–Protein interactions for RNA: ENST00000419181.5

GTF3A-202, Transcript of general transcription factor IIIA, humanhuman

TSL 1 (best)

Gene GTF3A, Length 1,191 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-202ENST00000419181 PLEKHG1Q9ULL1 1385 aa30.4■■■□□ 2.46
GTF3A-202ENST00000419181 SETD5Q9C0A6 1442 aa30.39■■■□□ 2.46
GTF3A-202ENST00000419181 UBAP1LF5GYI3 381 aa30.39■■■□□ 2.46
GTF3A-202ENST00000419181 HDGFP51858 240 aaKnown RBP30.39■■■□□ 2.46
GTF3A-202ENST00000419181 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.37■■■□□ 2.45
GTF3A-202ENST00000419181 PPP1R15AO75807 674 aaPredicted RBP30.36■■■□□ 2.45
GTF3A-202ENST00000419181 SLC26A8Q96RN1 970 aa30.36■■■□□ 2.45
GTF3A-202ENST00000419181 LRRC7Q96NW7 1537 aa30.36■■■□□ 2.45
GTF3A-202ENST00000419181 KIF1BO60333 1816 aa30.34■■■□□ 2.45
GTF3A-202ENST00000419181 ACIN1Q9UKV3 1341 aaKnown RBP30.32■■■□□ 2.44
GTF3A-202ENST00000419181 NUTM2DQ5VT03 806 aaPredicted RBP30.3■■■□□ 2.44
GTF3A-202ENST00000419181 BCANQ96GW7 911 aa30.3■■■□□ 2.44
GTF3A-202ENST00000419181 RAB3GAP2Q9H2M9 1393 aa30.29■■■□□ 2.44
GTF3A-202ENST00000419181 NWD1Q149M9 1564 aa30.29■■■□□ 2.44
GTF3A-202ENST00000419181 MPHOSPH9Q99550 1183 aa30.29■■■□□ 2.44
GTF3A-202ENST00000419181 FOXD1Q16676 465 aa30.27■■■□□ 2.44
GTF3A-202ENST00000419181 SENP3Q9H4L4 574 aaPredicted RBP30.27■■■□□ 2.44
GTF3A-202ENST00000419181 ADAMTS13Q76LX8 1427 aa30.27■■■□□ 2.44
GTF3A-202ENST00000419181 XIRP1Q702N8 1843 aaKnown RBP30.26■■■□□ 2.44
GTF3A-202ENST00000419181 KCNA6P17658 529 aa30.26■■■□□ 2.43
GTF3A-202ENST00000419181 DIP2AQ14689 1571 aa30.26■■■□□ 2.43
GTF3A-202ENST00000419181 NEXMIFQ5QGS0 1516 aa30.26■■■□□ 2.43
GTF3A-202ENST00000419181 ZNF326Q5BKZ1 582 aaKnown RBP30.25■■■□□ 2.43
GTF3A-202ENST00000419181 CHD2O14647 1828 aaKnown RBP30.24■■■□□ 2.43
GTF3A-202ENST00000419181 TBX22Q9Y458 520 aa30.23■■■□□ 2.43
GTF3A-202ENST00000419181 NKTRP30414 1462 aaKnown RBP30.23■■■□□ 2.43
GTF3A-202ENST00000419181 TOM1O60784 492 aa30.22■■■□□ 2.43
GTF3A-202ENST00000419181 ALKQ9UM73 1620 aa30.22■■■□□ 2.43
GTF3A-202ENST00000419181 NRXN3Q9Y4C0 1643 aa30.22■■■□□ 2.43
GTF3A-202ENST00000419181 SCAF1Q9H7N4 1312 aaKnown RBP30.22■■■□□ 2.43
GTF3A-202ENST00000419181 SETBP1Q9Y6X0 1596 aa30.2■■■□□ 2.43
GTF3A-202ENST00000419181 PIP4K2BP78356 416 aa30.18■■■□□ 2.42
GTF3A-202ENST00000419181 CCDC144AA2RUR9 1427 aa30.18■■■□□ 2.42
GTF3A-202ENST00000419181 TMEM94Q12767 1356 aa30.15■■■□□ 2.42
GTF3A-202ENST00000419181 PIK3R4Q99570 1358 aa30.15■■■□□ 2.42
GTF3A-202ENST00000419181 PPLO60437 1756 aa30.13■■■□□ 2.41
GTF3A-202ENST00000419181 HRCP23327 699 aa30.12■■■□□ 2.41
GTF3A-202ENST00000419181 PROSER2Q86WR7 435 aaPredicted RBP30.12■■■□□ 2.41
GTF3A-202ENST00000419181 RPGRIP1LQ68CZ1 1315 aa30.11■■■□□ 2.41
GTF3A-202ENST00000419181 SPATA31E1Q6ZUB1 1445 aa30.1■■■□□ 2.41
GTF3A-202ENST00000419181 PTPRUQ92729 1446 aa30.07■■■□□ 2.4
GTF3A-202ENST00000419181 VGFO15240 615 aaPredicted RBP30.06■■■□□ 2.4
GTF3A-202ENST00000419181 RBM33Q96EV2 1170 aaKnown RBP30.06■■■□□ 2.4
GTF3A-202ENST00000419181 XRN1Q8IZH2 1706 aaKnown RBP30.05■■■□□ 2.4
GTF3A-202ENST00000419181 IFT172Q9UG01 1749 aa30.04■■■□□ 2.4
GTF3A-202ENST00000419181 SETD1AO15047 1707 aaKnown RBP30.03■■■□□ 2.4
GTF3A-202ENST00000419181 METP08581 1390 aa30.03■■■□□ 2.4
GTF3A-202ENST00000419181 HSPA1LP34931 641 aa30.02■■■□□ 2.4
GTF3A-202ENST00000419181 DISP3Q9P2K9 1392 aa30.02■■■□□ 2.4
GTF3A-202ENST00000419181 AMOTL2Q9Y2J4 779 aa30.01■■■□□ 2.39
GTF3A-202ENST00000419181 NCOA3Q9Y6Q9 1424 aa30.01■■■□□ 2.39
GTF3A-202ENST00000419181 RGL3Q3MIN7 710 aa29.98■■■□□ 2.39
GTF3A-202ENST00000419181 MSH6P52701 1360 aa29.98■■■□□ 2.39
GTF3A-202ENST00000419181 ANKRD30BQ9BXX2 1392 aa29.98■■■□□ 2.39
GTF3A-202ENST00000419181 ADGRF5Q8IZF2 1346 aa29.92■■■□□ 2.38
GTF3A-202ENST00000419181 FAM135BQ49AJ0 1406 aa29.9■■■□□ 2.38
GTF3A-202ENST00000419181 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.9■■■□□ 2.38
GTF3A-202ENST00000419181 C14orf37Q86TY3 774 aa29.87■■■□□ 2.37
GTF3A-202ENST00000419181 ROBO1Q9Y6N7 1651 aa29.87■■■□□ 2.37
GTF3A-202ENST00000419181 PIK3C2GO75747 1445 aa29.87■■■□□ 2.37
GTF3A-202ENST00000419181 PRAG1Q86YV5 1406 aa29.87■■■□□ 2.37
GTF3A-202ENST00000419181 C19orf44Q9H6X5 657 aa29.86■■■□□ 2.37
GTF3A-202ENST00000419181 PTCH1Q13635 1447 aa29.85■■■□□ 2.37
GTF3A-202ENST00000419181 MYOM2P54296 1465 aa29.85■■■□□ 2.37
GTF3A-202ENST00000419181 NRXN1Q9ULB1 1477 aa29.84■■■□□ 2.37
GTF3A-202ENST00000419181 SLAIN2Q9P270 581 aa29.83■■■□□ 2.37
GTF3A-202ENST00000419181 DCCP43146 1447 aa29.82■■■□□ 2.36
GTF3A-202ENST00000419181 NALCNQ8IZF0 1738 aa29.8■■■□□ 2.36
GTF3A-202ENST00000419181 CADPS2Q86UW7 1296 aa29.8■■■□□ 2.36
GTF3A-202ENST00000419181 ASXL1Q8IXJ9 1541 aa29.8■■■□□ 2.36
GTF3A-202ENST00000419181 ROBO2Q9HCK4 1378 aa29.79■■■□□ 2.36
GTF3A-202ENST00000419181 ADGRL3Q9HAR2 1447 aa29.79■■■□□ 2.36
GTF3A-202ENST00000419181 ATF3P18847 181 aa29.78■■■□□ 2.36
GTF3A-202ENST00000419181 LAMC1P11047 1609 aa29.76■■■□□ 2.35
GTF3A-202ENST00000419181 TECPR2O15040 1411 aa29.73■■■□□ 2.35
GTF3A-202ENST00000419181 ILDR2Q71H61 639 aa29.73■■■□□ 2.35
GTF3A-202ENST00000419181 KNDC1Q76NI1 1749 aa29.73■■■□□ 2.35
GTF3A-202ENST00000419181 LRPPRCP42704 1394 aaKnown RBP29.72■■■□□ 2.35
GTF3A-202ENST00000419181 C14orf93Q9H972 538 aaKnown RBP29.71■■■□□ 2.35
GTF3A-202ENST00000419181 MST1RQ04912 1400 aa29.7■■■□□ 2.34
GTF3A-202ENST00000419181 TMEM132EQ6IEE7 984 aa29.69■■■□□ 2.34
GTF3A-202ENST00000419181 MED1Q15648 1581 aaPredicted RBP29.69■■■□□ 2.34
GTF3A-202ENST00000419181 ABCC11Q96J66 1382 aa29.68■■■□□ 2.34
GTF3A-202ENST00000419181 PHLPP1O60346 1717 aa29.68■■■□□ 2.34
GTF3A-202ENST00000419181 DHX57Q6P158 1386 aaKnown RBP29.67■■■□□ 2.34
GTF3A-202ENST00000419181 YTHDC2Q9H6S0 1430 aaKnown RBP29.67■■■□□ 2.34
GTF3A-202ENST00000419181 CFAP70Q5T0N1 1121 aa29.66■■■□□ 2.34
GTF3A-202ENST00000419181 DCAF11Q8TEB1 546 aa29.66■■■□□ 2.34
GTF3A-202ENST00000419181 STK26Q9P289 416 aa29.65■■■□□ 2.34
GTF3A-202ENST00000419181 STAC3Q96MF2 364 aa29.64■■■□□ 2.34
GTF3A-202ENST00000419181 AHDC1Q5TGY3 1603 aaPredicted RBP29.63■■■□□ 2.33
GTF3A-202ENST00000419181 COL16A1Q07092 1604 aaPredicted RBP29.63■■■□□ 2.33
GTF3A-202ENST00000419181 TRIM26Q12899 539 aaPredicted RBP29.62■■■□□ 2.33
GTF3A-202ENST00000419181 BRINP3Q76B58 766 aa29.62■■■□□ 2.33
GTF3A-202ENST00000419181 KDM2AQ9Y2K7 1162 aa29.62■■■□□ 2.33
GTF3A-202ENST00000419181 PHF23Q9BUL5 403 aaPredicted RBP29.61■■■□□ 2.33
GTF3A-202ENST00000419181 ADGRB1O14514 1584 aa29.6■■■□□ 2.33
GTF3A-202ENST00000419181 CDC42BPGQ6DT37 1551 aa29.6■■■□□ 2.33
GTF3A-202ENST00000419181 WAPLQ7Z5K2 1190 aa29.58■■■□□ 2.33
GTF3A-202ENST00000419181 C1orf167Q5SNV9 1468 aa29.57■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 206 ms