RNA–Protein interactions for RNA: ENST00000402434.6

RTN4-207, Transcript of reticulon 4, humanhuman

TSL 5 BASIC

Gene RTN4, Length 1,456 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-207ENST00000402434 RIMS2Q9UQ26 1411 aa28.5■■■□□ 2.15
RTN4-207ENST00000402434 CLTCL1P53675 1640 aa28.5■■■□□ 2.15
RTN4-207ENST00000402434 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.46■■■□□ 2.15
RTN4-207ENST00000402434 PLEKHG1Q9ULL1 1385 aa28.42■■■□□ 2.14
RTN4-207ENST00000402434 PPP1R15AO75807 674 aaPredicted RBP28.4■■■□□ 2.14
RTN4-207ENST00000402434 KIF1BO60333 1816 aa28.4■■■□□ 2.14
RTN4-207ENST00000402434 CCDC144AA2RUR9 1427 aa28.38■■■□□ 2.13
RTN4-207ENST00000402434 ZNF326Q5BKZ1 582 aaKnown RBP28.38■■■□□ 2.13
RTN4-207ENST00000402434 NUTM2DQ5VT03 806 aaPredicted RBP28.37■■■□□ 2.13
RTN4-207ENST00000402434 FBXO41Q8TF61 875 aa28.37■■■□□ 2.13
RTN4-207ENST00000402434 SLC26A8Q96RN1 970 aa28.37■■■□□ 2.13
RTN4-207ENST00000402434 CPS1P31327 1500 aa28.37■■■□□ 2.13
RTN4-207ENST00000402434 IQSEC2Q5JU85 1478 aa28.36■■■□□ 2.13
RTN4-207ENST00000402434 BCANQ96GW7 911 aa28.34■■■□□ 2.13
RTN4-207ENST00000402434 TRIM26Q12899 539 aaPredicted RBP28.33■■■□□ 2.13
RTN4-207ENST00000402434 NEXMIFQ5QGS0 1516 aa28.32■■■□□ 2.12
RTN4-207ENST00000402434 ILDR1Q86SU0 546 aaPredicted RBP28.32■■■□□ 2.12
RTN4-207ENST00000402434 TBX22Q9Y458 520 aa28.32■■■□□ 2.12
RTN4-207ENST00000402434 RPGRIP1LQ68CZ1 1315 aa28.31■■■□□ 2.12
RTN4-207ENST00000402434 STRCP1A6NGW2 1772 aa28.31■■■□□ 2.12
RTN4-207ENST00000402434 ANKRD30BQ9BXX2 1392 aa28.3■■■□□ 2.12
RTN4-207ENST00000402434 SPATA31E1Q6ZUB1 1445 aa28.3■■■□□ 2.12
RTN4-207ENST00000402434 ADAMTS13Q76LX8 1427 aa28.29■■■□□ 2.12
RTN4-207ENST00000402434 SENP3Q9H4L4 574 aaPredicted RBP28.28■■■□□ 2.12
RTN4-207ENST00000402434 KCNA6P17658 529 aa28.27■■■□□ 2.12
RTN4-207ENST00000402434 VGFO15240 615 aaPredicted RBP28.26■■■□□ 2.11
RTN4-207ENST00000402434 SETBP1Q9Y6X0 1596 aa28.24■■■□□ 2.11
RTN4-207ENST00000402434 LRRC7Q96NW7 1537 aa28.24■■■□□ 2.11
RTN4-207ENST00000402434 DIP2AQ14689 1571 aa28.24■■■□□ 2.11
RTN4-207ENST00000402434 RGL3Q3MIN7 710 aa28.21■■■□□ 2.11
RTN4-207ENST00000402434 NRXN3Q9Y4C0 1643 aa28.21■■■□□ 2.11
RTN4-207ENST00000402434 PIK3R4Q99570 1358 aa28.21■■■□□ 2.11
RTN4-207ENST00000402434 PPLO60437 1756 aa28.2■■■□□ 2.1
RTN4-207ENST00000402434 NWD1Q149M9 1564 aa28.19■■■□□ 2.1
RTN4-207ENST00000402434 CHD2O14647 1828 aaKnown RBP28.18■■■□□ 2.1
RTN4-207ENST00000402434 NKTRP30414 1462 aaKnown RBP28.15■■■□□ 2.1
RTN4-207ENST00000402434 PROSER2Q86WR7 435 aaPredicted RBP28.12■■■□□ 2.09
RTN4-207ENST00000402434 METP08581 1390 aa28.12■■■□□ 2.09
RTN4-207ENST00000402434 ADGRF5Q8IZF2 1346 aa28.11■■■□□ 2.09
RTN4-207ENST00000402434 IFT172Q9UG01 1749 aa28.11■■■□□ 2.09
RTN4-207ENST00000402434 UBAP1LF5GYI3 381 aa28.11■■■□□ 2.09
RTN4-207ENST00000402434 TMEM94Q12767 1356 aa28.11■■■□□ 2.09
RTN4-207ENST00000402434 PTPRUQ92729 1446 aa28.11■■■□□ 2.09
RTN4-207ENST00000402434 XIRP1Q702N8 1843 aaKnown RBP28.09■■■□□ 2.09
RTN4-207ENST00000402434 AMOTL2Q9Y2J4 779 aa28.09■■■□□ 2.09
RTN4-207ENST00000402434 TOM1O60784 492 aa28.07■■■□□ 2.08
RTN4-207ENST00000402434 ALKQ9UM73 1620 aa28.07■■■□□ 2.08
RTN4-207ENST00000402434 SETD1AO15047 1707 aaKnown RBP28.04■■■□□ 2.08
RTN4-207ENST00000402434 RBM33Q96EV2 1170 aaKnown RBP28.04■■■□□ 2.08
RTN4-207ENST00000402434 PIK3C2GO75747 1445 aa28.04■■■□□ 2.08
RTN4-207ENST00000402434 XRN1Q8IZH2 1706 aaKnown RBP28.03■■■□□ 2.08
RTN4-207ENST00000402434 NCOA3Q9Y6Q9 1424 aa28.03■■■□□ 2.08
RTN4-207ENST00000402434 MYOM2P54296 1465 aa28.03■■■□□ 2.08
RTN4-207ENST00000402434 NRXN1Q9ULB1 1477 aa28.02■■■□□ 2.08
RTN4-207ENST00000402434 DHX57Q6P158 1386 aaKnown RBP28.01■■■□□ 2.07
RTN4-207ENST00000402434 STAC3Q96MF2 364 aa28■■■□□ 2.07
RTN4-207ENST00000402434 PRAG1Q86YV5 1406 aa27.96■■■□□ 2.07
RTN4-207ENST00000402434 DCAF11Q8TEB1 546 aa27.95■■■□□ 2.07
RTN4-207ENST00000402434 C14orf93Q9H972 538 aaKnown RBP27.95■■■□□ 2.07
RTN4-207ENST00000402434 MSH6P52701 1360 aa27.94■■■□□ 2.06
RTN4-207ENST00000402434 PIP4K2BP78356 416 aa27.94■■■□□ 2.06
RTN4-207ENST00000402434 C19orf44Q9H6X5 657 aa27.92■■■□□ 2.06
RTN4-207ENST00000402434 PTCH1Q13635 1447 aa27.91■■■□□ 2.06
RTN4-207ENST00000402434 KDM2AQ9Y2K7 1162 aa27.91■■■□□ 2.06
RTN4-207ENST00000402434 CFAP70Q5T0N1 1121 aa27.89■■■□□ 2.06
RTN4-207ENST00000402434 SCAF1Q9H7N4 1312 aaKnown RBP27.89■■■□□ 2.06
RTN4-207ENST00000402434 ASXL1Q8IXJ9 1541 aa27.89■■■□□ 2.06
RTN4-207ENST00000402434 TMEM132EQ6IEE7 984 aa27.89■■■□□ 2.05
RTN4-207ENST00000402434 C14orf37Q86TY3 774 aa27.89■■■□□ 2.05
RTN4-207ENST00000402434 ROBO2Q9HCK4 1378 aa27.89■■■□□ 2.05
RTN4-207ENST00000402434 SIN3AQ96ST3 1273 aa27.88■■■□□ 2.05
RTN4-207ENST00000402434 LRPPRCP42704 1394 aaKnown RBP27.87■■■□□ 2.05
RTN4-207ENST00000402434 ABCC11Q96J66 1382 aa27.87■■■□□ 2.05
RTN4-207ENST00000402434 LAMC1P11047 1609 aa27.87■■■□□ 2.05
RTN4-207ENST00000402434 TECPR2O15040 1411 aa27.86■■■□□ 2.05
RTN4-207ENST00000402434 PCGF6Q9BYE7 350 aa27.85■■■□□ 2.05
RTN4-207ENST00000402434 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.84■■■□□ 2.05
RTN4-207ENST00000402434 CADPS2Q86UW7 1296 aa27.83■■■□□ 2.05
RTN4-207ENST00000402434 SLAIN2Q9P270 581 aa27.83■■■□□ 2.05
RTN4-207ENST00000402434 DCCP43146 1447 aa27.83■■■□□ 2.05
RTN4-207ENST00000402434 FAM135BQ49AJ0 1406 aa27.83■■■□□ 2.05
RTN4-207ENST00000402434 YTHDC2Q9H6S0 1430 aaKnown RBP27.83■■■□□ 2.05
RTN4-207ENST00000402434 STK26Q9P289 416 aa27.83■■■□□ 2.04
RTN4-207ENST00000402434 ADGRL3Q9HAR2 1447 aa27.82■■■□□ 2.04
RTN4-207ENST00000402434 ATF3P18847 181 aa27.82■■■□□ 2.04
RTN4-207ENST00000402434 NEUROD1Q13562 356 aa27.8■■■□□ 2.04
RTN4-207ENST00000402434 L3MBTL2Q969R5 705 aa27.79■■■□□ 2.04
RTN4-207ENST00000402434 HSPA1LP34931 641 aa27.78■■■□□ 2.04
RTN4-207ENST00000402434 SIRT1Q96EB6 747 aa27.78■■■□□ 2.04
RTN4-207ENST00000402434 ADGRB1O14514 1584 aa27.78■■■□□ 2.04
RTN4-207ENST00000402434 KNDC1Q76NI1 1749 aa27.77■■■□□ 2.04
RTN4-207ENST00000402434 NALCNQ8IZF0 1738 aa27.75■■■□□ 2.03
RTN4-207ENST00000402434 WAPLQ7Z5K2 1190 aa27.74■■■□□ 2.03
RTN4-207ENST00000402434 ROBO1Q9Y6N7 1651 aa27.71■■■□□ 2.03
RTN4-207ENST00000402434 PLEKHH1Q9ULM0 1364 aa27.7■■■□□ 2.03
RTN4-207ENST00000402434 MST1RQ04912 1400 aa27.7■■■□□ 2.02
RTN4-207ENST00000402434 DLC1Q96QB1 1528 aa27.69■■■□□ 2.02
RTN4-207ENST00000402434 KIAA1210Q9ULL0 1709 aa27.68■■■□□ 2.02
RTN4-207ENST00000402434 PRAM1Q96QH2 718 aa27.65■■■□□ 2.02
RTN4-207ENST00000402434 TRAK1Q9UPV9 953 aa27.65■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms