RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 ABCF1Q8NE71 845 aaKnown RBP eCLIP35.28■■■■□ 3.24
SHMT1-204ENST00000395682 CPS1P31327 1500 aa35.27■■■■□ 3.24
SHMT1-204ENST00000395682 SLC26A8Q96RN1 970 aa35.27■■■■□ 3.24
SHMT1-204ENST00000395682 SENP3Q9H4L4 574 aaPredicted RBP35.26■■■■□ 3.24
SHMT1-204ENST00000395682 ACIN1Q9UKV3 1341 aaKnown RBP35.26■■■■□ 3.23
SHMT1-204ENST00000395682 NUTM2DQ5VT03 806 aaPredicted RBP35.25■■■■□ 3.23
SHMT1-204ENST00000395682 MPHOSPH9Q99550 1183 aa35.25■■■■□ 3.23
SHMT1-204ENST00000395682 FOXD1Q16676 465 aa35.23■■■■□ 3.23
SHMT1-204ENST00000395682 TRPM2O94759 1503 aa35.22■■■■□ 3.23
SHMT1-204ENST00000395682 ZNF326Q5BKZ1 582 aaKnown RBP35.21■■■■□ 3.23
SHMT1-204ENST00000395682 PLEKHG1Q9ULL1 1385 aa35.2■■■■□ 3.23
SHMT1-204ENST00000395682 RAB3GAP2Q9H2M9 1393 aa35.19■■■■□ 3.22
SHMT1-204ENST00000395682 CLTCL1P53675 1640 aa35.17■■■■□ 3.22
SHMT1-204ENST00000395682 STRCP1A6NGW2 1772 aa35.16■■■■□ 3.22
SHMT1-204ENST00000395682 UBAP1LF5GYI3 381 aa35.16■■■■□ 3.22
SHMT1-204ENST00000395682 KCNA6P17658 529 aa35.13■■■■□ 3.21
SHMT1-204ENST00000395682 LRRC7Q96NW7 1537 aa35.11■■■■□ 3.21
SHMT1-204ENST00000395682 TBX22Q9Y458 520 aa35.1■■■■□ 3.21
SHMT1-204ENST00000395682 KIF1BO60333 1816 aa35.06■■■■□ 3.2
SHMT1-204ENST00000395682 TOM1O60784 492 aa35.04■■■■□ 3.2
SHMT1-204ENST00000395682 HRCP23327 699 aa35.04■■■■□ 3.2
SHMT1-204ENST00000395682 ADAMTS13Q76LX8 1427 aa35.03■■■■□ 3.2
SHMT1-204ENST00000395682 PROSER2Q86WR7 435 aaPredicted RBP35.01■■■■□ 3.2
SHMT1-204ENST00000395682 CCDC144AA2RUR9 1427 aa35■■■■□ 3.19
SHMT1-204ENST00000395682 RPGRIP1LQ68CZ1 1315 aa34.98■■■■□ 3.19
SHMT1-204ENST00000395682 NEXMIFQ5QGS0 1516 aa34.96■■■■□ 3.19
SHMT1-204ENST00000395682 PIP4K2BP78356 416 aa34.96■■■■□ 3.19
SHMT1-204ENST00000395682 VGFO15240 615 aaPredicted RBP34.95■■■■□ 3.19
SHMT1-204ENST00000395682 RBM33Q96EV2 1170 aaKnown RBP34.94■■■■□ 3.18
SHMT1-204ENST00000395682 SCAF1Q9H7N4 1312 aaKnown RBP34.94■■■■□ 3.18
SHMT1-204ENST00000395682 TMEM94Q12767 1356 aa34.94■■■■□ 3.18
SHMT1-204ENST00000395682 DIP2AQ14689 1571 aa34.92■■■■□ 3.18
SHMT1-204ENST00000395682 RGL3Q3MIN7 710 aa34.92■■■■□ 3.18
SHMT1-204ENST00000395682 NWD1Q149M9 1564 aa34.91■■■■□ 3.18
SHMT1-204ENST00000395682 PIK3R4Q99570 1358 aa34.91■■■■□ 3.18
SHMT1-204ENST00000395682 CHD2O14647 1828 aaKnown RBP34.91■■■■□ 3.18
SHMT1-204ENST00000395682 NKTRP30414 1462 aaKnown RBP34.9■■■■□ 3.18
SHMT1-204ENST00000395682 SETBP1Q9Y6X0 1596 aa34.89■■■■□ 3.18
SHMT1-204ENST00000395682 AMOTL2Q9Y2J4 779 aa34.87■■■■□ 3.17
SHMT1-204ENST00000395682 XIRP1Q702N8 1843 aaKnown RBP34.87■■■■□ 3.17
SHMT1-204ENST00000395682 NRXN3Q9Y4C0 1643 aa34.86■■■■□ 3.17
SHMT1-204ENST00000395682 SPATA31E1Q6ZUB1 1445 aa34.86■■■■□ 3.17
SHMT1-204ENST00000395682 ALKQ9UM73 1620 aa34.83■■■■□ 3.17
SHMT1-204ENST00000395682 PTPRUQ92729 1446 aa34.82■■■■□ 3.17
SHMT1-204ENST00000395682 METP08581 1390 aa34.82■■■■□ 3.16
SHMT1-204ENST00000395682 ANKRD30BQ9BXX2 1392 aa34.8■■■■□ 3.16
SHMT1-204ENST00000395682 PPLO60437 1756 aa34.78■■■■□ 3.16
SHMT1-204ENST00000395682 ADGRF5Q8IZF2 1346 aa34.76■■■■□ 3.15
SHMT1-204ENST00000395682 MSH6P52701 1360 aa34.75■■■■□ 3.15
SHMT1-204ENST00000395682 C14orf37Q86TY3 774 aa34.75■■■■□ 3.15
SHMT1-204ENST00000395682 HSPA1LP34931 641 aa34.74■■■■□ 3.15
SHMT1-204ENST00000395682 NCOA3Q9Y6Q9 1424 aa34.72■■■■□ 3.15
SHMT1-204ENST00000395682 C19orf44Q9H6X5 657 aa34.67■■■■□ 3.14
SHMT1-204ENST00000395682 XRN1Q8IZH2 1706 aaKnown RBP34.66■■■■□ 3.14
SHMT1-204ENST00000395682 SLAIN2Q9P270 581 aa34.64■■■■□ 3.14
SHMT1-204ENST00000395682 IFT172Q9UG01 1749 aa34.63■■■■□ 3.13
SHMT1-204ENST00000395682 ATF3P18847 181 aa34.61■■■■□ 3.13
SHMT1-204ENST00000395682 FAM135BQ49AJ0 1406 aa34.61■■■■□ 3.13
SHMT1-204ENST00000395682 SETD1AO15047 1707 aaKnown RBP34.61■■■■□ 3.13
SHMT1-204ENST00000395682 CADPS2Q86UW7 1296 aa34.59■■■■□ 3.13
SHMT1-204ENST00000395682 TRIM26Q12899 539 aaPredicted RBP34.58■■■■□ 3.13
SHMT1-204ENST00000395682 PIK3C2GO75747 1445 aa34.56■■■■□ 3.12
SHMT1-204ENST00000395682 TMEM132EQ6IEE7 984 aa34.54■■■■□ 3.12
SHMT1-204ENST00000395682 SIPA1L2Q9P2F8 1722 aaPredicted RBP34.54■■■■□ 3.12
SHMT1-204ENST00000395682 ROBO2Q9HCK4 1378 aa34.53■■■■□ 3.12
SHMT1-204ENST00000395682 DCAF11Q8TEB1 546 aa34.53■■■■□ 3.12
SHMT1-204ENST00000395682 C14orf93Q9H972 538 aaKnown RBP34.53■■■■□ 3.12
SHMT1-204ENST00000395682 KDM2AQ9Y2K7 1162 aa34.53■■■■□ 3.12
SHMT1-204ENST00000395682 STK26Q9P289 416 aa34.52■■■■□ 3.12
SHMT1-204ENST00000395682 MYOM2P54296 1465 aa34.52■■■■□ 3.12
SHMT1-204ENST00000395682 PTCH1Q13635 1447 aa34.51■■■■□ 3.12
SHMT1-204ENST00000395682 NRXN1Q9ULB1 1477 aa34.5■■■■□ 3.11
SHMT1-204ENST00000395682 CFAP70Q5T0N1 1121 aa34.49■■■■□ 3.11
SHMT1-204ENST00000395682 ROBO1Q9Y6N7 1651 aa34.47■■■■□ 3.11
SHMT1-204ENST00000395682 PRAG1Q86YV5 1406 aa34.47■■■■□ 3.11
SHMT1-204ENST00000395682 STAC3Q96MF2 364 aa34.46■■■■□ 3.11
SHMT1-204ENST00000395682 LRPPRCP42704 1394 aaKnown RBP34.46■■■■□ 3.11
SHMT1-204ENST00000395682 DCCP43146 1447 aa34.46■■■■□ 3.11
SHMT1-204ENST00000395682 ADGRL3Q9HAR2 1447 aa34.46■■■■□ 3.11
SHMT1-204ENST00000395682 DHX57Q6P158 1386 aaKnown RBP34.44■■■■□ 3.1
SHMT1-204ENST00000395682 ABCC11Q96J66 1382 aa34.43■■■■□ 3.1
SHMT1-204ENST00000395682 ASXL1Q8IXJ9 1541 aa34.41■■■■□ 3.1
SHMT1-204ENST00000395682 WAPLQ7Z5K2 1190 aa34.4■■■■□ 3.1
SHMT1-204ENST00000395682 YTHDC2Q9H6S0 1430 aaKnown RBP34.39■■■■□ 3.1
SHMT1-204ENST00000395682 DISP3Q9P2K9 1392 aa34.39■■■■□ 3.1
SHMT1-204ENST00000395682 TECPR2O15040 1411 aa34.38■■■■□ 3.09
SHMT1-204ENST00000395682 NALCNQ8IZF0 1738 aa34.37■■■■□ 3.09
SHMT1-204ENST00000395682 MST1RQ04912 1400 aa34.36■■■■□ 3.09
SHMT1-204ENST00000395682 BRINP3Q76B58 766 aa34.35■■■■□ 3.09
SHMT1-204ENST00000395682 LAMC1P11047 1609 aa34.33■■■■□ 3.09
SHMT1-204ENST00000395682 SIRT1Q96EB6 747 aa34.33■■■■□ 3.09
SHMT1-204ENST00000395682 SIN3AQ96ST3 1273 aa34.32■■■■□ 3.08
SHMT1-204ENST00000395682 PLEKHH1Q9ULM0 1364 aa34.31■■■■□ 3.08
SHMT1-204ENST00000395682 KNDC1Q76NI1 1749 aa34.27■■■■□ 3.08
SHMT1-204ENST00000395682 NEUROD1Q13562 356 aa34.27■■■■□ 3.08
SHMT1-204ENST00000395682 PHLPP1O60346 1717 aa34.26■■■■□ 3.07
SHMT1-204ENST00000395682 C1orf167Q5SNV9 1468 aa34.25■■■■□ 3.07
SHMT1-204ENST00000395682 PRAM1Q96QH2 718 aa34.23■■■■□ 3.07
SHMT1-204ENST00000395682 TRAK1Q9UPV9 953 aa34.23■■■■□ 3.07
SHMT1-204ENST00000395682 ADGRB1O14514 1584 aa34.23■■■■□ 3.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms