RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 ERLIN1O75477 346 aa16.19■□□□□ 0.18
USP49-203ENST00000394253 HDGFP51858 240 aaKnown RBP16.19■□□□□ 0.18
USP49-203ENST00000394253 CFAP57Q96MR6 1250 aa16.19■□□□□ 0.18
USP49-203ENST00000394253 NUCB2P80303 420 aa16.18■□□□□ 0.18
USP49-203ENST00000394253 BCCIPQ9P287 314 aaKnown RBP eCLIP16.18■□□□□ 0.18
USP49-203ENST00000394253 KIF7Q2M1P5 1343 aa16.18■□□□□ 0.18
USP49-203ENST00000394253 CCDC73Q6ZRK6 1079 aa16.18■□□□□ 0.18
USP49-203ENST00000394253 CPLX1O14810 134 aa16.18■□□□□ 0.18
USP49-203ENST00000394253 LMOD3Q0VAK6 560 aa16.17■□□□□ 0.18
USP49-203ENST00000394253 RNF20Q5VTR2 975 aa16.16■□□□□ 0.18
USP49-203ENST00000394253 SRPK2P78362 688 aaKnown RBP16.16■□□□□ 0.18
USP49-203ENST00000394253 TRIM34Q9BYJ4 488 aa16.16■□□□□ 0.18
USP49-203ENST00000394253 SAFBQ15424 915 aaKnown RBP eCLIP16.15■□□□□ 0.18
USP49-203ENST00000394253 FAM107BQ9H098 131 aa16.15■□□□□ 0.18
USP49-203ENST00000394253 CHMP5Q9NZZ3 219 aa16.15■□□□□ 0.18
USP49-203ENST00000394253 GOLGA3Q08378 1498 aa16.15■□□□□ 0.18
USP49-203ENST00000394253 MRE11P49959 708 aa16.15■□□□□ 0.18
USP49-203ENST00000394253 ANKRD62A6NC57 917 aa16.15■□□□□ 0.18
USP49-203ENST00000394253 NOL10Q9BSC4 688 aaKnown RBP16.15■□□□□ 0.18
USP49-203ENST00000394253 CENPJQ9HC77 1338 aaPredicted RBP16.15■□□□□ 0.18
USP49-203ENST00000394253 KIF3BO15066 747 aa16.14■□□□□ 0.18
USP49-203ENST00000394253 CCDC91Q7Z6B0 441 aa16.14■□□□□ 0.17
USP49-203ENST00000394253 CTDP1Q9Y5B0 961 aaPredicted RBP16.14■□□□□ 0.17
USP49-203ENST00000394253 TSHZ2Q9NRE2 1034 aa16.13■□□□□ 0.17
USP49-203ENST00000394253 FOXD4L6Q3SYB3 417 aaPredicted RBP16.13■□□□□ 0.17
USP49-203ENST00000394253 FOXD4L3Q6VB84 417 aaPredicted RBP16.13■□□□□ 0.17
USP49-203ENST00000394253 LRRCC1Q9C099 1032 aa16.13■□□□□ 0.17
USP49-203ENST00000394253 SYCP1Q15431 976 aa16.13■□□□□ 0.17
USP49-203ENST00000394253 CEP63Q96MT8 703 aa16.13■□□□□ 0.17
USP49-203ENST00000394253 GOLGA6L10A0A0M3HER8 536 aa16.13■□□□□ 0.17
USP49-203ENST00000394253 HDGFL2Q7Z4V5 671 aaPredicted RBP16.13■□□□□ 0.17
USP49-203ENST00000394253 BRMS1Q9HCU9 246 aa16.13■□□□□ 0.17
USP49-203ENST00000394253 STAMBPO95630 424 aa16.12■□□□□ 0.17
USP49-203ENST00000394253 TRDNQ13061 729 aa16.12■□□□□ 0.17
USP49-203ENST00000394253 PDILTQ8N807 584 aa16.12■□□□□ 0.17
USP49-203ENST00000394253 PDE3BQ13370 1112 aa16.12■□□□□ 0.17
USP49-203ENST00000394253 ZNF330Q9Y3S2 320 aaPredicted RBP16.12■□□□□ 0.17
USP49-203ENST00000394253 FANCIQ9NVI1 1328 aa16.12■□□□□ 0.17
USP49-203ENST00000394253 CCDC146Q8IYE0 955 aa16.12■□□□□ 0.17
USP49-203ENST00000394253 CENPHQ9H3R5 247 aa16.11■□□□□ 0.17
USP49-203ENST00000394253 RSPH4AQ5TD94 716 aa16.11■□□□□ 0.17
USP49-203ENST00000394253 PIP4K2AP48426 406 aaPredicted RBP16.11■□□□□ 0.17
USP49-203ENST00000394253 ROCK1Q13464 1354 aa16.11■□□□□ 0.17
USP49-203ENST00000394253 ZNHIT6Q9NWK9 470 aaKnown RBP16.1■□□□□ 0.17
USP49-203ENST00000394253 RILPL2Q969X0 211 aa16.1■□□□□ 0.17
USP49-203ENST00000394253 ERICH2A1L162 156 aa16.1■□□□□ 0.17
USP49-203ENST00000394253 PAF1Q8N7H5 531 aa16.1■□□□□ 0.17
USP49-203ENST00000394253 RBM33Q96EV2 1170 aaKnown RBP16.1■□□□□ 0.17
USP49-203ENST00000394253 FILIP1LQ4L180 1135 aa16.1■□□□□ 0.17
USP49-203ENST00000394253 U2AF1L5P0DN76 240 aaPredicted RBP16.09■□□□□ 0.17
USP49-203ENST00000394253 U2AF1Q01081 240 aaKnown RBP eCLIP16.09■□□□□ 0.17
USP49-203ENST00000394253 SCRIBQ14160 1630 aa16.08■□□□□ 0.17
USP49-203ENST00000394253 SKIDA1Q1XH10 827 aa16.08■□□□□ 0.16
USP49-203ENST00000394253 TRIM5Q9C035 493 aa16.08■□□□□ 0.16
USP49-203ENST00000394253 PDCL2Q8N4E4 241 aa16.08■□□□□ 0.16
USP49-203ENST00000394253 PLEKHD1A6NEE1 506 aa16.07■□□□□ 0.16
USP49-203ENST00000394253 XBP1P17861 261 aa16.07■□□□□ 0.16
USP49-203ENST00000394253 MAGEC2Q9UBF1 373 aaPredicted RBP16.07■□□□□ 0.16
USP49-203ENST00000394253 SLC4A10Q6U841 1118 aa16.07■□□□□ 0.16
USP49-203ENST00000394253 KINO60870 393 aaKnown RBP16.06■□□□□ 0.16
USP49-203ENST00000394253 CCDC181Q5TID7 509 aa16.06■□□□□ 0.16
USP49-203ENST00000394253 WWC2Q6AWC2 1192 aa16.06■□□□□ 0.16
USP49-203ENST00000394253 LUZP1Q86V48 1076 aa16.06■□□□□ 0.16
USP49-203ENST00000394253 TAX1BP1Q86VP1 789 aa16.06■□□□□ 0.16
USP49-203ENST00000394253 SHTN1A0MZ66 631 aa16.06■□□□□ 0.16
USP49-203ENST00000394253 CFDP1Q9UEE9 299 aaPredicted RBP16.06■□□□□ 0.16
USP49-203ENST00000394253 TTLL5Q6EMB2 1281 aa16.06■□□□□ 0.16
USP49-203ENST00000394253 TXLNAP40222 546 aa16.05■□□□□ 0.16
USP49-203ENST00000394253 MBD3O95983 291 aa16.05■□□□□ 0.16
USP49-203ENST00000394253 CALCOCO1Q9P1Z2 691 aa16.05■□□□□ 0.16
USP49-203ENST00000394253 SMC3Q9UQE7 1217 aa16.05■□□□□ 0.16
USP49-203ENST00000394253 CCDC175P0C221 793 aa16.05■□□□□ 0.16
USP49-203ENST00000394253 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.05■□□□□ 0.16
USP49-203ENST00000394253 CCDC112Q8NEF3 446 aa16.04■□□□□ 0.16
USP49-203ENST00000394253 ROCK2O75116 1388 aaKnown RBP16.04■□□□□ 0.16
USP49-203ENST00000394253 SDF4Q9BRK5 362 aa16.04■□□□□ 0.16
USP49-203ENST00000394253 DESP17661 470 aa16.03■□□□□ 0.16
USP49-203ENST00000394253 CEP162Q5TB80 1403 aa16.03■□□□□ 0.16
USP49-203ENST00000394253 MCM3P25205 808 aa16.03■□□□□ 0.16
USP49-203ENST00000394253 SOX12O15370 315 aa16.03■□□□□ 0.16
USP49-203ENST00000394253 PDE4AP27815 886 aa16.03■□□□□ 0.16
USP49-203ENST00000394253 SMC2O95347 1197 aa16.03■□□□□ 0.16
USP49-203ENST00000394253 ANO2Q9NQ90 1003 aa16.03■□□□□ 0.16
USP49-203ENST00000394253 MAP9Q49MG5 647 aa16.02■□□□□ 0.16
USP49-203ENST00000394253 MICALCLQ6ZW33 695 aa16.02■□□□□ 0.16
USP49-203ENST00000394253 MAP2K1Q02750 393 aaPredicted RBP16.02■□□□□ 0.15
USP49-203ENST00000394253 ANKRD45Q5TZF3 282 aa16.02■□□□□ 0.15
USP49-203ENST00000394253 NFXL1Q6ZNB6 911 aa16.02■□□□□ 0.15
USP49-203ENST00000394253 DDX23Q9BUQ8 820 aaKnown RBP16.02■□□□□ 0.15
USP49-203ENST00000394253 PDCP20941 246 aa16.02■□□□□ 0.15
USP49-203ENST00000394253 DCAF11Q8TEB1 546 aa16.02■□□□□ 0.15
USP49-203ENST00000394253 GTF2E1P29083 439 aaPredicted RBP16.01■□□□□ 0.15
USP49-203ENST00000394253 VPS37CA5D8V6 355 aaPredicted RBP16.01■□□□□ 0.15
USP49-203ENST00000394253 SEPT6Q14141 434 aa16.01■□□□□ 0.15
USP49-203ENST00000394253 PABPN1Q86U42 306 aaKnown RBP eCLIP16.01■□□□□ 0.15
USP49-203ENST00000394253 POLR3GO15318 223 aaPredicted RBP16.01■□□□□ 0.15
USP49-203ENST00000394253 TMCO3Q6UWJ1 677 aa16■□□□□ 0.15
USP49-203ENST00000394253 DHX16O60231 1041 aaKnown RBP16■□□□□ 0.15
USP49-203ENST00000394253 CHMP7Q8WUX9 453 aaPredicted RBP16■□□□□ 0.15
USP49-203ENST00000394253 FBXW7Q969H0 707 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms