RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 UBAP1LF5GYI3 381 aa25.25■■□□□ 1.63
HMGN4-201ENST00000377575 TRIM52Q96A61 297 aa25.25■■□□□ 1.63
HMGN4-201ENST00000377575 KIF1BO60333 1816 aa25.24■■□□□ 1.63
HMGN4-201ENST00000377575 CLTCL1P53675 1640 aa25.24■■□□□ 1.63
HMGN4-201ENST00000377575 LRRC7Q96NW7 1537 aa25.24■■□□□ 1.63
HMGN4-201ENST00000377575 PLEKHG1Q9ULL1 1385 aa25.24■■□□□ 1.63
HMGN4-201ENST00000377575 PPP1R15AO75807 674 aaPredicted RBP25.24■■□□□ 1.63
HMGN4-201ENST00000377575 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.22■■□□□ 1.63
HMGN4-201ENST00000377575 NWD1Q149M9 1564 aa25.2■■□□□ 1.62
HMGN4-201ENST00000377575 BCANQ96GW7 911 aa25.2■■□□□ 1.62
HMGN4-201ENST00000377575 DIP2AQ14689 1571 aa25.19■■□□□ 1.62
HMGN4-201ENST00000377575 XIRP1Q702N8 1843 aaKnown RBP25.19■■□□□ 1.62
HMGN4-201ENST00000377575 SLC4A1APQ9BWU0 796 aaKnown RBP25.18■■□□□ 1.62
HMGN4-201ENST00000377575 SLC26A8Q96RN1 970 aa25.17■■□□□ 1.62
HMGN4-201ENST00000377575 TOM1O60784 492 aa25.16■■□□□ 1.62
HMGN4-201ENST00000377575 CHD2O14647 1828 aaKnown RBP25.16■■□□□ 1.62
HMGN4-201ENST00000377575 NKTRP30414 1462 aaKnown RBP25.15■■□□□ 1.62
HMGN4-201ENST00000377575 ACIN1Q9UKV3 1341 aaKnown RBP25.13■■□□□ 1.61
HMGN4-201ENST00000377575 KCNA6P17658 529 aa25.13■■□□□ 1.61
HMGN4-201ENST00000377575 SETD5Q9C0A6 1442 aa25.12■■□□□ 1.61
HMGN4-201ENST00000377575 ALKQ9UM73 1620 aa25.11■■□□□ 1.61
HMGN4-201ENST00000377575 ZNF326Q5BKZ1 582 aaKnown RBP25.1■■□□□ 1.61
HMGN4-201ENST00000377575 NUTM2DQ5VT03 806 aaPredicted RBP25.1■■□□□ 1.61
HMGN4-201ENST00000377575 NEXMIFQ5QGS0 1516 aa25.1■■□□□ 1.61
HMGN4-201ENST00000377575 SCAF1Q9H7N4 1312 aaKnown RBP25.1■■□□□ 1.61
HMGN4-201ENST00000377575 ADAMTS13Q76LX8 1427 aa25.09■■□□□ 1.61
HMGN4-201ENST00000377575 SETBP1Q9Y6X0 1596 aa25.09■■□□□ 1.61
HMGN4-201ENST00000377575 NRXN3Q9Y4C0 1643 aa25.08■■□□□ 1.6
HMGN4-201ENST00000377575 PIP4K2BP78356 416 aa25.07■■□□□ 1.6
HMGN4-201ENST00000377575 TBX22Q9Y458 520 aa25.07■■□□□ 1.6
HMGN4-201ENST00000377575 TMEM94Q12767 1356 aa25.05■■□□□ 1.6
HMGN4-201ENST00000377575 PIK3R4Q99570 1358 aa25.05■■□□□ 1.6
HMGN4-201ENST00000377575 PPLO60437 1756 aa25.03■■□□□ 1.6
HMGN4-201ENST00000377575 PROSER2Q86WR7 435 aaPredicted RBP25.02■■□□□ 1.6
HMGN4-201ENST00000377575 MPHOSPH9Q99550 1183 aa25.02■■□□□ 1.6
HMGN4-201ENST00000377575 CCDC144AA2RUR9 1427 aa25.02■■□□□ 1.6
HMGN4-201ENST00000377575 RAB3GAP2Q9H2M9 1393 aa25.01■■□□□ 1.59
HMGN4-201ENST00000377575 FOXD1Q16676 465 aa25■■□□□ 1.59
HMGN4-201ENST00000377575 XRN1Q8IZH2 1706 aaKnown RBP24.98■■□□□ 1.59
HMGN4-201ENST00000377575 MSH6P52701 1360 aa24.96■■□□□ 1.59
HMGN4-201ENST00000377575 RPGRIP1LQ68CZ1 1315 aa24.96■■□□□ 1.59
HMGN4-201ENST00000377575 NCOA3Q9Y6Q9 1424 aa24.95■■□□□ 1.58
HMGN4-201ENST00000377575 IFT172Q9UG01 1749 aa24.94■■□□□ 1.58
HMGN4-201ENST00000377575 SETD1AO15047 1707 aaKnown RBP24.93■■□□□ 1.58
HMGN4-201ENST00000377575 VGFO15240 615 aaPredicted RBP24.93■■□□□ 1.58
HMGN4-201ENST00000377575 HSPA1LP34931 641 aa24.93■■□□□ 1.58
HMGN4-201ENST00000377575 RBM33Q96EV2 1170 aaKnown RBP24.92■■□□□ 1.58
HMGN4-201ENST00000377575 PTPRUQ92729 1446 aa24.92■■□□□ 1.58
HMGN4-201ENST00000377575 SPATA31E1Q6ZUB1 1445 aa24.89■■□□□ 1.58
HMGN4-201ENST00000377575 ROBO1Q9Y6N7 1651 aa24.89■■□□□ 1.58
HMGN4-201ENST00000377575 AMOTL2Q9Y2J4 779 aa24.89■■□□□ 1.58
HMGN4-201ENST00000377575 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.88■■□□□ 1.57
HMGN4-201ENST00000377575 METP08581 1390 aa24.88■■□□□ 1.57
HMGN4-201ENST00000377575 FAM135BQ49AJ0 1406 aa24.86■■□□□ 1.57
HMGN4-201ENST00000377575 C14orf37Q86TY3 774 aa24.86■■□□□ 1.57
HMGN4-201ENST00000377575 ANKRD30BQ9BXX2 1392 aa24.84■■□□□ 1.57
HMGN4-201ENST00000377575 DISP3Q9P2K9 1392 aa24.84■■□□□ 1.57
HMGN4-201ENST00000377575 HRCP23327 699 aa24.84■■□□□ 1.57
HMGN4-201ENST00000377575 RGL3Q3MIN7 710 aa24.81■■□□□ 1.56
HMGN4-201ENST00000377575 DCCP43146 1447 aa24.8■■□□□ 1.56
HMGN4-201ENST00000377575 PTCH1Q13635 1447 aa24.79■■□□□ 1.56
HMGN4-201ENST00000377575 NALCNQ8IZF0 1738 aa24.79■■□□□ 1.56
HMGN4-201ENST00000377575 C19orf44Q9H6X5 657 aa24.79■■□□□ 1.56
HMGN4-201ENST00000377575 MED1Q15648 1581 aaPredicted RBP24.79■■□□□ 1.56
HMGN4-201ENST00000377575 CADPS2Q86UW7 1296 aa24.78■■□□□ 1.56
HMGN4-201ENST00000377575 PRAG1Q86YV5 1406 aa24.78■■□□□ 1.56
HMGN4-201ENST00000377575 ATF3P18847 181 aa24.77■■□□□ 1.56
HMGN4-201ENST00000377575 SLAIN2Q9P270 581 aa24.77■■□□□ 1.56
HMGN4-201ENST00000377575 PHLPP1O60346 1717 aa24.76■■□□□ 1.55
HMGN4-201ENST00000377575 ADGRF5Q8IZF2 1346 aa24.75■■□□□ 1.55
HMGN4-201ENST00000377575 PIK3C2GO75747 1445 aa24.75■■□□□ 1.55
HMGN4-201ENST00000377575 ADGRL3Q9HAR2 1447 aa24.75■■□□□ 1.55
HMGN4-201ENST00000377575 LAMC1P11047 1609 aa24.75■■□□□ 1.55
HMGN4-201ENST00000377575 MYOM2P54296 1465 aa24.74■■□□□ 1.55
HMGN4-201ENST00000377575 KNDC1Q76NI1 1749 aa24.72■■□□□ 1.55
HMGN4-201ENST00000377575 NRXN1Q9ULB1 1477 aa24.7■■□□□ 1.54
HMGN4-201ENST00000377575 ROBO2Q9HCK4 1378 aa24.68■■□□□ 1.54
HMGN4-201ENST00000377575 ASXL1Q8IXJ9 1541 aa24.68■■□□□ 1.54
HMGN4-201ENST00000377575 AHDC1Q5TGY3 1603 aaPredicted RBP24.68■■□□□ 1.54
HMGN4-201ENST00000377575 COL16A1Q07092 1604 aaPredicted RBP24.67■■□□□ 1.54
HMGN4-201ENST00000377575 MST1RQ04912 1400 aa24.66■■□□□ 1.54
HMGN4-201ENST00000377575 TECPR2O15040 1411 aa24.65■■□□□ 1.54
HMGN4-201ENST00000377575 LRPPRCP42704 1394 aaKnown RBP24.63■■□□□ 1.53
HMGN4-201ENST00000377575 NHSL1Q5SYE7 1610 aa24.62■■□□□ 1.53
HMGN4-201ENST00000377575 CDC42BPGQ6DT37 1551 aa24.61■■□□□ 1.53
HMGN4-201ENST00000377575 YTHDC2Q9H6S0 1430 aaKnown RBP24.6■■□□□ 1.53
HMGN4-201ENST00000377575 BRINP3Q76B58 766 aa24.59■■□□□ 1.53
HMGN4-201ENST00000377575 ABCC11Q96J66 1382 aa24.58■■□□□ 1.53
HMGN4-201ENST00000377575 C14orf93Q9H972 538 aaKnown RBP24.58■■□□□ 1.53
HMGN4-201ENST00000377575 JCADQ9P266 1359 aa24.57■■□□□ 1.52
HMGN4-201ENST00000377575 SHPRHQ149N8 1683 aa24.57■■□□□ 1.52
HMGN4-201ENST00000377575 STK26Q9P289 416 aa24.57■■□□□ 1.52
HMGN4-201ENST00000377575 TMEM132EQ6IEE7 984 aa24.56■■□□□ 1.52
HMGN4-201ENST00000377575 STAC3Q96MF2 364 aa24.55■■□□□ 1.52
HMGN4-201ENST00000377575 C1orf167Q5SNV9 1468 aa24.55■■□□□ 1.52
HMGN4-201ENST00000377575 DHX57Q6P158 1386 aaKnown RBP24.54■■□□□ 1.52
HMGN4-201ENST00000377575 CFAP70Q5T0N1 1121 aa24.53■■□□□ 1.52
HMGN4-201ENST00000377575 ILDR2Q71H61 639 aa24.53■■□□□ 1.52
HMGN4-201ENST00000377575 DCAF11Q8TEB1 546 aa24.53■■□□□ 1.52
HMGN4-201ENST00000377575 DLC1Q96QB1 1528 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms