RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 CLTCL1P53675 1640 aa24.57■■□□□ 1.52
LSM1-201ENST00000311351 TRPM2O94759 1503 aa24.56■■□□□ 1.52
LSM1-201ENST00000311351 TRIM52Q96A61 297 aa24.56■■□□□ 1.52
LSM1-201ENST00000311351 XIRP1Q702N8 1843 aaKnown RBP24.55■■□□□ 1.52
LSM1-201ENST00000311351 SLC26A8Q96RN1 970 aa24.54■■□□□ 1.52
LSM1-201ENST00000311351 ALKQ9UM73 1620 aa24.53■■□□□ 1.52
LSM1-201ENST00000311351 PLEKHG1Q9ULL1 1385 aa24.53■■□□□ 1.52
LSM1-201ENST00000311351 PPP1R15AO75807 674 aaPredicted RBP24.52■■□□□ 1.52
LSM1-201ENST00000311351 NWD1Q149M9 1564 aa24.51■■□□□ 1.51
LSM1-201ENST00000311351 NUTM2DQ5VT03 806 aaPredicted RBP24.51■■□□□ 1.51
LSM1-201ENST00000311351 BCANQ96GW7 911 aa24.5■■□□□ 1.51
LSM1-201ENST00000311351 KIF1BO60333 1816 aa24.48■■□□□ 1.51
LSM1-201ENST00000311351 FOXD1Q16676 465 aa24.48■■□□□ 1.51
LSM1-201ENST00000311351 SLC4A1APQ9BWU0 796 aaKnown RBP24.47■■□□□ 1.51
LSM1-201ENST00000311351 CHD2O14647 1828 aaKnown RBP24.45■■□□□ 1.5
LSM1-201ENST00000311351 SCAF1Q9H7N4 1312 aaKnown RBP24.45■■□□□ 1.5
LSM1-201ENST00000311351 HDGFP51858 240 aaKnown RBP24.45■■□□□ 1.5
LSM1-201ENST00000311351 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.45■■□□□ 1.5
LSM1-201ENST00000311351 ADAMTS13Q76LX8 1427 aa24.44■■□□□ 1.5
LSM1-201ENST00000311351 PIP4K2BP78356 416 aa24.44■■□□□ 1.5
LSM1-201ENST00000311351 DIP2AQ14689 1571 aa24.43■■□□□ 1.5
LSM1-201ENST00000311351 TOM1O60784 492 aa24.43■■□□□ 1.5
LSM1-201ENST00000311351 KCNA6P17658 529 aa24.43■■□□□ 1.5
LSM1-201ENST00000311351 NKTRP30414 1462 aaKnown RBP24.43■■□□□ 1.5
LSM1-201ENST00000311351 NRXN3Q9Y4C0 1643 aa24.43■■□□□ 1.5
LSM1-201ENST00000311351 NEXMIFQ5QGS0 1516 aa24.42■■□□□ 1.5
LSM1-201ENST00000311351 ZNF326Q5BKZ1 582 aaKnown RBP24.41■■□□□ 1.5
LSM1-201ENST00000311351 TMEM94Q12767 1356 aa24.41■■□□□ 1.5
LSM1-201ENST00000311351 SETD5Q9C0A6 1442 aa24.39■■□□□ 1.5
LSM1-201ENST00000311351 SETBP1Q9Y6X0 1596 aa24.38■■□□□ 1.49
LSM1-201ENST00000311351 RBM33Q96EV2 1170 aaKnown RBP24.37■■□□□ 1.49
LSM1-201ENST00000311351 TBX22Q9Y458 520 aa24.36■■□□□ 1.49
LSM1-201ENST00000311351 PROSER2Q86WR7 435 aaPredicted RBP24.35■■□□□ 1.49
LSM1-201ENST00000311351 RAB3GAP2Q9H2M9 1393 aa24.33■■□□□ 1.49
LSM1-201ENST00000311351 MPHOSPH9Q99550 1183 aa24.33■■□□□ 1.49
LSM1-201ENST00000311351 PPLO60437 1756 aa24.32■■□□□ 1.48
LSM1-201ENST00000311351 HSPA1LP34931 641 aa24.32■■□□□ 1.48
LSM1-201ENST00000311351 PTPRUQ92729 1446 aa24.31■■□□□ 1.48
LSM1-201ENST00000311351 PIK3R4Q99570 1358 aa24.3■■□□□ 1.48
LSM1-201ENST00000311351 XRN1Q8IZH2 1706 aaKnown RBP24.3■■□□□ 1.48
LSM1-201ENST00000311351 CCDC144AA2RUR9 1427 aa24.28■■□□□ 1.48
LSM1-201ENST00000311351 SETD1AO15047 1707 aaKnown RBP24.27■■□□□ 1.48
LSM1-201ENST00000311351 MSH6P52701 1360 aa24.25■■□□□ 1.47
LSM1-201ENST00000311351 METP08581 1390 aa24.24■■□□□ 1.47
LSM1-201ENST00000311351 IFT172Q9UG01 1749 aa24.24■■□□□ 1.47
LSM1-201ENST00000311351 ROBO1Q9Y6N7 1651 aa24.23■■□□□ 1.47
LSM1-201ENST00000311351 SPATA31E1Q6ZUB1 1445 aa24.22■■□□□ 1.47
LSM1-201ENST00000311351 DISP3Q9P2K9 1392 aa24.22■■□□□ 1.47
LSM1-201ENST00000311351 AMOTL2Q9Y2J4 779 aa24.22■■□□□ 1.47
LSM1-201ENST00000311351 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.21■■□□□ 1.47
LSM1-201ENST00000311351 ACIN1Q9UKV3 1341 aaKnown RBP24.2■■□□□ 1.46
LSM1-201ENST00000311351 RPGRIP1LQ68CZ1 1315 aa24.19■■□□□ 1.46
LSM1-201ENST00000311351 NCOA3Q9Y6Q9 1424 aa24.18■■□□□ 1.46
LSM1-201ENST00000311351 FAM135BQ49AJ0 1406 aa24.18■■□□□ 1.46
LSM1-201ENST00000311351 VGFO15240 615 aaPredicted RBP24.17■■□□□ 1.46
LSM1-201ENST00000311351 C14orf37Q86TY3 774 aa24.17■■□□□ 1.46
LSM1-201ENST00000311351 RGL3Q3MIN7 710 aa24.16■■□□□ 1.46
LSM1-201ENST00000311351 MED1Q15648 1581 aaPredicted RBP24.16■■□□□ 1.46
LSM1-201ENST00000311351 NALCNQ8IZF0 1738 aa24.13■■□□□ 1.45
LSM1-201ENST00000311351 ADGRF5Q8IZF2 1346 aa24.12■■□□□ 1.45
LSM1-201ENST00000311351 SLAIN2Q9P270 581 aa24.1■■□□□ 1.45
LSM1-201ENST00000311351 ANKRD30BQ9BXX2 1392 aa24.09■■□□□ 1.45
LSM1-201ENST00000311351 PHLPP1O60346 1717 aa24.08■■□□□ 1.45
LSM1-201ENST00000311351 C19orf44Q9H6X5 657 aa24.08■■□□□ 1.45
LSM1-201ENST00000311351 PTCH1Q13635 1447 aa24.08■■□□□ 1.44
LSM1-201ENST00000311351 ASXL1Q8IXJ9 1541 aa24.07■■□□□ 1.44
LSM1-201ENST00000311351 DCCP43146 1447 aa24.07■■□□□ 1.44
LSM1-201ENST00000311351 ADGRL3Q9HAR2 1447 aa24.07■■□□□ 1.44
LSM1-201ENST00000311351 PIK3C2GO75747 1445 aa24.06■■□□□ 1.44
LSM1-201ENST00000311351 ROBO2Q9HCK4 1378 aa24.05■■□□□ 1.44
LSM1-201ENST00000311351 PRAG1Q86YV5 1406 aa24.05■■□□□ 1.44
LSM1-201ENST00000311351 ATF3P18847 181 aa24.05■■□□□ 1.44
LSM1-201ENST00000311351 CADPS2Q86UW7 1296 aa24.05■■□□□ 1.44
LSM1-201ENST00000311351 HRCP23327 699 aa24.04■■□□□ 1.44
LSM1-201ENST00000311351 MYOM2P54296 1465 aa24.03■■□□□ 1.44
LSM1-201ENST00000311351 ILDR2Q71H61 639 aa24.02■■□□□ 1.44
LSM1-201ENST00000311351 COL16A1Q07092 1604 aaPredicted RBP24.02■■□□□ 1.44
LSM1-201ENST00000311351 MST1RQ04912 1400 aa24.01■■□□□ 1.43
LSM1-201ENST00000311351 NRXN1Q9ULB1 1477 aa24■■□□□ 1.43
LSM1-201ENST00000311351 KNDC1Q76NI1 1749 aa24■■□□□ 1.43
LSM1-201ENST00000311351 AHDC1Q5TGY3 1603 aaPredicted RBP23.99■■□□□ 1.43
LSM1-201ENST00000311351 LAMC1P11047 1609 aa23.99■■□□□ 1.43
LSM1-201ENST00000311351 TECPR2O15040 1411 aa23.95■■□□□ 1.42
LSM1-201ENST00000311351 TMEM132EQ6IEE7 984 aa23.95■■□□□ 1.42
LSM1-201ENST00000311351 BRINP3Q76B58 766 aa23.95■■□□□ 1.42
LSM1-201ENST00000311351 LRPPRCP42704 1394 aaKnown RBP23.94■■□□□ 1.42
LSM1-201ENST00000311351 STK26Q9P289 416 aa23.94■■□□□ 1.42
LSM1-201ENST00000311351 NHSL1Q5SYE7 1610 aa23.94■■□□□ 1.42
LSM1-201ENST00000311351 YTHDC2Q9H6S0 1430 aaKnown RBP23.92■■□□□ 1.42
LSM1-201ENST00000311351 CDC42BPGQ6DT37 1551 aa23.91■■□□□ 1.42
LSM1-201ENST00000311351 C1orf167Q5SNV9 1468 aa23.9■■□□□ 1.42
LSM1-201ENST00000311351 CFAP70Q5T0N1 1121 aa23.9■■□□□ 1.42
LSM1-201ENST00000311351 C14orf93Q9H972 538 aaKnown RBP23.89■■□□□ 1.41
LSM1-201ENST00000311351 ABCC11Q96J66 1382 aa23.89■■□□□ 1.41
LSM1-201ENST00000311351 JCADQ9P266 1359 aa23.89■■□□□ 1.41
LSM1-201ENST00000311351 PLEKHH1Q9ULM0 1364 aa23.89■■□□□ 1.41
LSM1-201ENST00000311351 SHPRHQ149N8 1683 aa23.88■■□□□ 1.41
LSM1-201ENST00000311351 WAPLQ7Z5K2 1190 aa23.87■■□□□ 1.41
LSM1-201ENST00000311351 DHX57Q6P158 1386 aaKnown RBP23.86■■□□□ 1.41
LSM1-201ENST00000311351 ADGRB1O14514 1584 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms