RNA–Protein interactions for RNA: ENST00000288723.8

RAB28-201, Transcript of RAB28, member RAS oncogene family, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RAB28, Length 1,810 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB28-201ENST00000288723 FOXD1Q16676 465 aa30.57■■■□□ 2.48
RAB28-201ENST00000288723 PPP1R15AO75807 674 aaPredicted RBP30.57■■■□□ 2.48
RAB28-201ENST00000288723 IQSEC2Q5JU85 1478 aa30.55■■■□□ 2.48
RAB28-201ENST00000288723 CPS1P31327 1500 aa30.54■■■□□ 2.48
RAB28-201ENST00000288723 HDGFP51858 240 aaKnown RBP30.54■■■□□ 2.48
RAB28-201ENST00000288723 TRPM2O94759 1503 aa30.53■■■□□ 2.48
RAB28-201ENST00000288723 MPHOSPH9Q99550 1183 aa30.52■■■□□ 2.48
RAB28-201ENST00000288723 STRCP1A6NGW2 1772 aa30.52■■■□□ 2.48
RAB28-201ENST00000288723 CLTCL1P53675 1640 aa30.52■■■□□ 2.48
RAB28-201ENST00000288723 ZNF326Q5BKZ1 582 aaKnown RBP30.5■■■□□ 2.47
RAB28-201ENST00000288723 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.5■■■□□ 2.47
RAB28-201ENST00000288723 RAB3GAP2Q9H2M9 1393 aa30.5■■■□□ 2.47
RAB28-201ENST00000288723 PLEKHG1Q9ULL1 1385 aa30.49■■■□□ 2.47
RAB28-201ENST00000288723 UBAP1LF5GYI3 381 aa30.47■■■□□ 2.47
RAB28-201ENST00000288723 LRRC7Q96NW7 1537 aa30.43■■■□□ 2.46
RAB28-201ENST00000288723 KCNA6P17658 529 aa30.4■■■□□ 2.46
RAB28-201ENST00000288723 ACIN1Q9UKV3 1341 aaKnown RBP30.38■■■□□ 2.45
RAB28-201ENST00000288723 KIF1BO60333 1816 aa30.38■■■□□ 2.45
RAB28-201ENST00000288723 ADAMTS13Q76LX8 1427 aa30.37■■■□□ 2.45
RAB28-201ENST00000288723 TBX22Q9Y458 520 aa30.36■■■□□ 2.45
RAB28-201ENST00000288723 RBM33Q96EV2 1170 aaKnown RBP30.35■■■□□ 2.45
RAB28-201ENST00000288723 NEXMIFQ5QGS0 1516 aa30.33■■■□□ 2.45
RAB28-201ENST00000288723 CCDC144AA2RUR9 1427 aa30.32■■■□□ 2.44
RAB28-201ENST00000288723 TOM1O60784 492 aa30.32■■■□□ 2.44
RAB28-201ENST00000288723 PIP4K2BP78356 416 aa30.31■■■□□ 2.44
RAB28-201ENST00000288723 PROSER2Q86WR7 435 aaPredicted RBP30.31■■■□□ 2.44
RAB28-201ENST00000288723 SCAF1Q9H7N4 1312 aaKnown RBP30.31■■■□□ 2.44
RAB28-201ENST00000288723 TMEM94Q12767 1356 aa30.29■■■□□ 2.44
RAB28-201ENST00000288723 RGL3Q3MIN7 710 aa30.27■■■□□ 2.44
RAB28-201ENST00000288723 NWD1Q149M9 1564 aa30.27■■■□□ 2.44
RAB28-201ENST00000288723 XIRP1Q702N8 1843 aaKnown RBP30.26■■■□□ 2.43
RAB28-201ENST00000288723 HRCP23327 699 aa30.26■■■□□ 2.43
RAB28-201ENST00000288723 NRXN3Q9Y4C0 1643 aa30.25■■■□□ 2.43
RAB28-201ENST00000288723 CHD2O14647 1828 aaKnown RBP30.25■■■□□ 2.43
RAB28-201ENST00000288723 ALKQ9UM73 1620 aa30.25■■■□□ 2.43
RAB28-201ENST00000288723 DIP2AQ14689 1571 aa30.25■■■□□ 2.43
RAB28-201ENST00000288723 SETBP1Q9Y6X0 1596 aa30.23■■■□□ 2.43
RAB28-201ENST00000288723 RPGRIP1LQ68CZ1 1315 aa30.23■■■□□ 2.43
RAB28-201ENST00000288723 NKTRP30414 1462 aaKnown RBP30.23■■■□□ 2.43
RAB28-201ENST00000288723 VGFO15240 615 aaPredicted RBP30.23■■■□□ 2.43
RAB28-201ENST00000288723 SPATA31E1Q6ZUB1 1445 aa30.2■■■□□ 2.43
RAB28-201ENST00000288723 PTPRUQ92729 1446 aa30.2■■■□□ 2.43
RAB28-201ENST00000288723 AMOTL2Q9Y2J4 779 aa30.2■■■□□ 2.43
RAB28-201ENST00000288723 PIK3R4Q99570 1358 aa30.2■■■□□ 2.43
RAB28-201ENST00000288723 METP08581 1390 aa30.19■■■□□ 2.42
RAB28-201ENST00000288723 PPLO60437 1756 aa30.16■■■□□ 2.42
RAB28-201ENST00000288723 ANKRD30BQ9BXX2 1392 aa30.14■■■□□ 2.41
RAB28-201ENST00000288723 ADGRF5Q8IZF2 1346 aa30.13■■■□□ 2.41
RAB28-201ENST00000288723 HSPA1LP34931 641 aa30.12■■■□□ 2.41
RAB28-201ENST00000288723 MSH6P52701 1360 aa30.1■■■□□ 2.41
RAB28-201ENST00000288723 C14orf37Q86TY3 774 aa30.1■■■□□ 2.41
RAB28-201ENST00000288723 XRN1Q8IZH2 1706 aaKnown RBP30.05■■■□□ 2.4
RAB28-201ENST00000288723 IFT172Q9UG01 1749 aa30.04■■■□□ 2.4
RAB28-201ENST00000288723 SETD1AO15047 1707 aaKnown RBP30.03■■■□□ 2.4
RAB28-201ENST00000288723 NCOA3Q9Y6Q9 1424 aa30.02■■■□□ 2.4
RAB28-201ENST00000288723 C19orf44Q9H6X5 657 aa30■■■□□ 2.39
RAB28-201ENST00000288723 SLAIN2Q9P270 581 aa29.99■■■□□ 2.39
RAB28-201ENST00000288723 PIK3C2GO75747 1445 aa29.96■■■□□ 2.39
RAB28-201ENST00000288723 FAM135BQ49AJ0 1406 aa29.96■■■□□ 2.39
RAB28-201ENST00000288723 ATF3P18847 181 aa29.95■■■□□ 2.39
RAB28-201ENST00000288723 TMEM132EQ6IEE7 984 aa29.95■■■□□ 2.39
RAB28-201ENST00000288723 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.95■■■□□ 2.39
RAB28-201ENST00000288723 ROBO2Q9HCK4 1378 aa29.94■■■□□ 2.38
RAB28-201ENST00000288723 CADPS2Q86UW7 1296 aa29.93■■■□□ 2.38
RAB28-201ENST00000288723 TRIM26Q12899 539 aaPredicted RBP29.92■■■□□ 2.38
RAB28-201ENST00000288723 STK26Q9P289 416 aa29.92■■■□□ 2.38
RAB28-201ENST00000288723 KDM2AQ9Y2K7 1162 aa29.92■■■□□ 2.38
RAB28-201ENST00000288723 DCAF11Q8TEB1 546 aa29.92■■■□□ 2.38
RAB28-201ENST00000288723 ROBO1Q9Y6N7 1651 aa29.91■■■□□ 2.38
RAB28-201ENST00000288723 MYOM2P54296 1465 aa29.91■■■□□ 2.38
RAB28-201ENST00000288723 CFAP70Q5T0N1 1121 aa29.9■■■□□ 2.38
RAB28-201ENST00000288723 PTCH1Q13635 1447 aa29.89■■■□□ 2.38
RAB28-201ENST00000288723 C14orf93Q9H972 538 aaKnown RBP29.89■■■□□ 2.38
RAB28-201ENST00000288723 NRXN1Q9ULB1 1477 aa29.89■■■□□ 2.37
RAB28-201ENST00000288723 ASXL1Q8IXJ9 1541 aa29.87■■■□□ 2.37
RAB28-201ENST00000288723 ADGRL3Q9HAR2 1447 aa29.85■■■□□ 2.37
RAB28-201ENST00000288723 DHX57Q6P158 1386 aaKnown RBP29.85■■■□□ 2.37
RAB28-201ENST00000288723 PRAG1Q86YV5 1406 aa29.84■■■□□ 2.37
RAB28-201ENST00000288723 LRPPRCP42704 1394 aaKnown RBP29.83■■■□□ 2.37
RAB28-201ENST00000288723 NALCNQ8IZF0 1738 aa29.83■■■□□ 2.37
RAB28-201ENST00000288723 DCCP43146 1447 aa29.83■■■□□ 2.37
RAB28-201ENST00000288723 WAPLQ7Z5K2 1190 aa29.82■■■□□ 2.36
RAB28-201ENST00000288723 DISP3Q9P2K9 1392 aa29.82■■■□□ 2.36
RAB28-201ENST00000288723 YTHDC2Q9H6S0 1430 aaKnown RBP29.8■■■□□ 2.36
RAB28-201ENST00000288723 ABCC11Q96J66 1382 aa29.79■■■□□ 2.36
RAB28-201ENST00000288723 MST1RQ04912 1400 aa29.78■■■□□ 2.36
RAB28-201ENST00000288723 TECPR2O15040 1411 aa29.77■■■□□ 2.36
RAB28-201ENST00000288723 BRINP3Q76B58 766 aa29.77■■■□□ 2.36
RAB28-201ENST00000288723 SIN3AQ96ST3 1273 aa29.76■■■□□ 2.35
RAB28-201ENST00000288723 PLEKHH1Q9ULM0 1364 aa29.76■■■□□ 2.35
RAB28-201ENST00000288723 LAMC1P11047 1609 aa29.74■■■□□ 2.35
RAB28-201ENST00000288723 STAC3Q96MF2 364 aa29.74■■■□□ 2.35
RAB28-201ENST00000288723 PHLPP1O60346 1717 aa29.71■■■□□ 2.35
RAB28-201ENST00000288723 KNDC1Q76NI1 1749 aa29.71■■■□□ 2.35
RAB28-201ENST00000288723 NEUROD1Q13562 356 aa29.71■■■□□ 2.35
RAB28-201ENST00000288723 MED1Q15648 1581 aaPredicted RBP29.69■■■□□ 2.34
RAB28-201ENST00000288723 C1orf167Q5SNV9 1468 aa29.68■■■□□ 2.34
RAB28-201ENST00000288723 ADGRB1O14514 1584 aa29.68■■■□□ 2.34
RAB28-201ENST00000288723 SAFB2Q14151 953 aaKnown RBP eCLIP29.67■■■□□ 2.342e-6■■■□□ 16.4
RAB28-201ENST00000288723 TRAK1Q9UPV9 953 aa29.67■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms