RNA–Protein interactions for RNA: ENST00000270061.11

SSBP4-201, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP4, Length 1,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-201ENST00000270061 CPS1P31327 1500 aa36.11■■■■□ 3.37
SSBP4-201ENST00000270061 TRIM52Q96A61 297 aa36.1■■■■□ 3.37
SSBP4-201ENST00000270061 CHGAP10645 457 aaKnown RBP36.07■■■■□ 3.36
SSBP4-201ENST00000270061 STRCP1A6NGW2 1772 aa36.03■■■■□ 3.36
SSBP4-201ENST00000270061 ZFYVE9O95405 1425 aa36.01■■■■□ 3.36
SSBP4-201ENST00000270061 RIMS2Q9UQ26 1411 aa36■■■■□ 3.35
SSBP4-201ENST00000270061 HDGFP51858 240 aaKnown RBP35.99■■■■□ 3.35
SSBP4-201ENST00000270061 SLC4A1APQ9BWU0 796 aaKnown RBP35.97■■■■□ 3.35
SSBP4-201ENST00000270061 TRPM2O94759 1503 aa35.95■■■■□ 3.35
SSBP4-201ENST00000270061 PPP1R15AO75807 674 aaPredicted RBP35.94■■■■□ 3.34
SSBP4-201ENST00000270061 BCANQ96GW7 911 aa35.93■■■■□ 3.34
SSBP4-201ENST00000270061 ABCF1Q8NE71 845 aaKnown RBP eCLIP35.92■■■■□ 3.34
SSBP4-201ENST00000270061 CLTCL1P53675 1640 aa35.91■■■■□ 3.34
SSBP4-201ENST00000270061 SLC26A8Q96RN1 970 aa35.91■■■■□ 3.34
SSBP4-201ENST00000270061 UBAP1LF5GYI3 381 aa35.9■■■■□ 3.34
SSBP4-201ENST00000270061 PLEKHG1Q9ULL1 1385 aa35.9■■■■□ 3.34
SSBP4-201ENST00000270061 KIF1BO60333 1816 aa35.9■■■■□ 3.34
SSBP4-201ENST00000270061 LRRC7Q96NW7 1537 aa35.87■■■■□ 3.33
SSBP4-201ENST00000270061 SENP3Q9H4L4 574 aaPredicted RBP35.86■■■■□ 3.33
SSBP4-201ENST00000270061 NUTM2DQ5VT03 806 aaPredicted RBP35.85■■■■□ 3.33
SSBP4-201ENST00000270061 ACIN1Q9UKV3 1341 aaKnown RBP35.83■■■■□ 3.33
SSBP4-201ENST00000270061 ZNF326Q5BKZ1 582 aaKnown RBP35.81■■■■□ 3.32
SSBP4-201ENST00000270061 KCNA6P17658 529 aa35.79■■■■□ 3.32
SSBP4-201ENST00000270061 MPHOSPH9Q99550 1183 aa35.79■■■■□ 3.32
SSBP4-201ENST00000270061 TOM1O60784 492 aa35.78■■■■□ 3.32
SSBP4-201ENST00000270061 XIRP1Q702N8 1843 aaKnown RBP35.77■■■■□ 3.32
SSBP4-201ENST00000270061 FOXD1Q16676 465 aa35.76■■■■□ 3.32
SSBP4-201ENST00000270061 CHD2O14647 1828 aaKnown RBP35.76■■■■□ 3.32
SSBP4-201ENST00000270061 NWD1Q149M9 1564 aa35.74■■■■□ 3.31
SSBP4-201ENST00000270061 TBX22Q9Y458 520 aa35.74■■■■□ 3.31
SSBP4-201ENST00000270061 DIP2AQ14689 1571 aa35.73■■■■□ 3.31
SSBP4-201ENST00000270061 ADAMTS13Q76LX8 1427 aa35.72■■■■□ 3.31
SSBP4-201ENST00000270061 NEXMIFQ5QGS0 1516 aa35.7■■■■□ 3.31
SSBP4-201ENST00000270061 NKTRP30414 1462 aaKnown RBP35.7■■■■□ 3.3
SSBP4-201ENST00000270061 SCAF1Q9H7N4 1312 aaKnown RBP35.68■■■■□ 3.3
SSBP4-201ENST00000270061 PIP4K2BP78356 416 aa35.67■■■■□ 3.3
SSBP4-201ENST00000270061 PROSER2Q86WR7 435 aaPredicted RBP35.66■■■■□ 3.3
SSBP4-201ENST00000270061 ALKQ9UM73 1620 aa35.65■■■■□ 3.3
SSBP4-201ENST00000270061 SETBP1Q9Y6X0 1596 aa35.65■■■■□ 3.3
SSBP4-201ENST00000270061 CCDC144AA2RUR9 1427 aa35.65■■■■□ 3.3
SSBP4-201ENST00000270061 TMEM94Q12767 1356 aa35.65■■■■□ 3.3
SSBP4-201ENST00000270061 NRXN3Q9Y4C0 1643 aa35.65■■■■□ 3.3
SSBP4-201ENST00000270061 PIK3R4Q99570 1358 aa35.63■■■■□ 3.29
SSBP4-201ENST00000270061 PPLO60437 1756 aa35.58■■■■□ 3.29
SSBP4-201ENST00000270061 RBM33Q96EV2 1170 aaKnown RBP35.58■■■■□ 3.29
SSBP4-201ENST00000270061 RPGRIP1LQ68CZ1 1315 aa35.58■■■■□ 3.29
SSBP4-201ENST00000270061 VGFO15240 615 aaPredicted RBP35.56■■■■□ 3.28
SSBP4-201ENST00000270061 AMOTL2Q9Y2J4 779 aa35.5■■■■□ 3.27
SSBP4-201ENST00000270061 PTPRUQ92729 1446 aa35.5■■■■□ 3.27
SSBP4-201ENST00000270061 SPATA31E1Q6ZUB1 1445 aa35.49■■■■□ 3.27
SSBP4-201ENST00000270061 MSH6P52701 1360 aa35.48■■■■□ 3.27
SSBP4-201ENST00000270061 RGL3Q3MIN7 710 aa35.47■■■■□ 3.27
SSBP4-201ENST00000270061 HSPA1LP34931 641 aa35.46■■■■□ 3.27
SSBP4-201ENST00000270061 METP08581 1390 aa35.46■■■■□ 3.27
SSBP4-201ENST00000270061 XRN1Q8IZH2 1706 aaKnown RBP35.46■■■■□ 3.27
SSBP4-201ENST00000270061 TIMELESSQ9UNS1 1208 aa35.46■■■■□ 3.27
SSBP4-201ENST00000270061 NCOA3Q9Y6Q9 1424 aa35.45■■■■□ 3.27
SSBP4-201ENST00000270061 IFT172Q9UG01 1749 aa35.44■■■■□ 3.26
SSBP4-201ENST00000270061 SETD1AO15047 1707 aaKnown RBP35.43■■■■□ 3.26
SSBP4-201ENST00000270061 C14orf37Q86TY3 774 aa35.41■■■■□ 3.26
SSBP4-201ENST00000270061 SIN3AQ96ST3 1273 aa35.39■■■■□ 3.26
SSBP4-201ENST00000270061 ANKRD30BQ9BXX2 1392 aa35.38■■■■□ 3.25
SSBP4-201ENST00000270061 SIPA1L2Q9P2F8 1722 aaPredicted RBP35.35■■■■□ 3.25
SSBP4-201ENST00000270061 FAM135BQ49AJ0 1406 aa35.34■■■■□ 3.25
SSBP4-201ENST00000270061 ADGRF5Q8IZF2 1346 aa35.34■■■■□ 3.25
SSBP4-201ENST00000270061 ROBO1Q9Y6N7 1651 aa35.33■■■■□ 3.25
SSBP4-201ENST00000270061 C19orf44Q9H6X5 657 aa35.33■■■■□ 3.25
SSBP4-201ENST00000270061 NEUROD1Q13562 356 aa35.3■■■■□ 3.24
SSBP4-201ENST00000270061 SLAIN2Q9P270 581 aa35.3■■■■□ 3.24
SSBP4-201ENST00000270061 CADPS2Q86UW7 1296 aa35.28■■■■□ 3.24
SSBP4-201ENST00000270061 ATF3P18847 181 aa35.27■■■■□ 3.24
SSBP4-201ENST00000270061 PIK3C2GO75747 1445 aa35.24■■■■□ 3.23
SSBP4-201ENST00000270061 PTCH1Q13635 1447 aa35.23■■■■□ 3.23
SSBP4-201ENST00000270061 DISP3Q9P2K9 1392 aa35.23■■■■□ 3.23
SSBP4-201ENST00000270061 DCCP43146 1447 aa35.21■■■■□ 3.23
SSBP4-201ENST00000270061 PRAG1Q86YV5 1406 aa35.2■■■■□ 3.23
SSBP4-201ENST00000270061 NALCNQ8IZF0 1738 aa35.2■■■■□ 3.23
SSBP4-201ENST00000270061 MYOM2P54296 1465 aa35.2■■■■□ 3.23
SSBP4-201ENST00000270061 ROBO2Q9HCK4 1378 aa35.18■■■■□ 3.22
SSBP4-201ENST00000270061 ADGRL3Q9HAR2 1447 aa35.18■■■■□ 3.22
SSBP4-201ENST00000270061 NRXN1Q9ULB1 1477 aa35.16■■■■□ 3.22
SSBP4-201ENST00000270061 ZNF316A6NFI3 1004 aaPredicted RBP35.16■■■■□ 3.22
SSBP4-201ENST00000270061 TONSLQ96HA7 1378 aa35.15■■■■□ 3.22
SSBP4-201ENST00000270061 LAMC1P11047 1609 aa35.13■■■■□ 3.21
SSBP4-201ENST00000270061 PHLPP1O60346 1717 aa35.12■■■■□ 3.21
SSBP4-201ENST00000270061 ASXL1Q8IXJ9 1541 aa35.12■■■■□ 3.21
SSBP4-201ENST00000270061 TMEM132EQ6IEE7 984 aa35.1■■■■□ 3.21
SSBP4-201ENST00000270061 MED1Q15648 1581 aaPredicted RBP35.1■■■■□ 3.21
SSBP4-201ENST00000270061 C14orf93Q9H972 538 aaKnown RBP35.1■■■■□ 3.21
SSBP4-201ENST00000270061 STK26Q9P289 416 aa35.09■■■■□ 3.21
SSBP4-201ENST00000270061 KNDC1Q76NI1 1749 aa35.09■■■■□ 3.21
SSBP4-201ENST00000270061 LRPPRCP42704 1394 aaKnown RBP35.08■■■■□ 3.21
SSBP4-201ENST00000270061 TECPR2O15040 1411 aa35.07■■■■□ 3.2
SSBP4-201ENST00000270061 MST1RQ04912 1400 aa35.07■■■■□ 3.2
SSBP4-201ENST00000270061 DCAF11Q8TEB1 546 aa35.06■■■■□ 3.2
SSBP4-201ENST00000270061 CFAP70Q5T0N1 1121 aa35.05■■■■□ 3.2
SSBP4-201ENST00000270061 ABCC11Q96J66 1382 aa35.05■■■■□ 3.2
SSBP4-201ENST00000270061 YTHDC2Q9H6S0 1430 aaKnown RBP35.04■■■■□ 3.2
SSBP4-201ENST00000270061 KDM2AQ9Y2K7 1162 aa35.04■■■■□ 3.2
SSBP4-201ENST00000270061 STAC3Q96MF2 364 aa35.02■■■■□ 3.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms