RNA–Protein interactions for RNA: ENSMUST00000034713.8

Ldlr-201, Transcript of Low-density lipoprotein receptor, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ldlr, Length 4,627 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ldlr-201ENSMUST00000034713 Abca5Q8K448 1642 aa12.48□□□□□ -0.41
Ldlr-201ENSMUST00000034713 Spryd3E9Q9B3 442 aa12.48□□□□□ -0.41
Ldlr-201ENSMUST00000034713 Armcx1Q9CX83 456 aa12.48□□□□□ -0.41
Ldlr-201ENSMUST00000034713 Inpp5dQ9ES52 1191 aa12.48□□□□□ -0.41
Ldlr-201ENSMUST00000034713 Ddrgk1Q80WW9 315 aa12.47□□□□□ -0.41
Ldlr-201ENSMUST00000034713 Irx6Q9ER75 438 aa12.47□□□□□ -0.41
Ldlr-201ENSMUST00000034713 Trappc8E9PWG2 1437 aa12.45□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Gsto1O09131 240 aa12.45□□□□□ -0.42
Ldlr-201ENSMUST00000034713 PrkcshO08795 521 aa12.45□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Zscan10Q3URR7 782 aa12.45□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Rtf1A2AQ19 715 aaKnown RBP12.45□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Rock1P70335 1354 aa12.44□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Atp2b2Q9R0K7 1198 aa12.44□□□□□ -0.42
Ldlr-201ENSMUST00000034713 DroshaQ5HZJ0 1373 aaKnown RBP12.44□□□□□ -0.42
Ldlr-201ENSMUST00000034713 FanciQ8K368 1330 aa12.44□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Cfap74Q3UY96 1578 aa12.44□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Ylpm1Q9R0I7 1386 aaKnown RBP12.44□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Pde3bQ61409 1100 aa12.44□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Slc52a2Q9D8F3 450 aa12.43□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Pknox2Q8BG99 474 aa12.43□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Rrbp1Q99PL5 1605 aaKnown RBP12.43□□□□□ -0.42
Ldlr-201ENSMUST00000034713 ChgaP26339 463 aaKnown RBP12.43□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Ccar1Q8CH18 1146 aaKnown RBP12.43□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Prkrip1Q9CWV6 186 aaKnown RBP12.43□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Lmtk2Q3TYD6 1471 aa12.43□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Erich6bQ9D4S6 220 aa12.42□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Kif7B7ZNG0 1348 aa12.42□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Tnnt2P50752 301 aa12.42□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Hsp90b1P08113 802 aaKnown RBP12.42□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Ggt6Q6PDE7 497 aa12.42□□□□□ -0.42
Ldlr-201ENSMUST00000034713 GphnQ8BUV3 769 aaKnown RBP12.42□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Washc2Q6PGL7 1334 aa12.41□□□□□ -0.42
Ldlr-201ENSMUST00000034713 CrbnQ8C7D2 445 aa12.4□□□□□ -0.42
Ldlr-201ENSMUST00000034713 1700019A02RikA0A087WPV9 146 aa12.4□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Ralbp1Q62172 648 aa12.4□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Gm973E9Q295 1059 aa12.4□□□□□ -0.42
Ldlr-201ENSMUST00000034713 Sart3Q9JLI8 962 aaKnown RBP12.4□□□□□ -0.42
Ldlr-201ENSMUST00000034713 MsnP26041 577 aaKnown RBP12.39□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Cabp4Q8VHC5 271 aa12.39□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Lmo7E9PYF4 1699 aaKnown RBP12.38□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Mfap1aC0HKD8 439 aaKnown RBP12.38□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Mfap1bC0HKD9 439 aaKnown RBP12.38□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Cgnl1Q6AW69 1298 aa12.38□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Tsen2Q6P7W5 460 aa12.38□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Plin1Q8CGN5 517 aa12.38□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Rsph3aQ3UFY4 516 aa12.38□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Map3k4O08648 1597 aa12.37□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Adgrl3Q80TS3 1537 aa12.37□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Kdm5bQ80Y84 1544 aa12.37□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Adcy10Q8C0T9 1614 aa12.36□□□□□ -0.43
Ldlr-201ENSMUST00000034713 PnisrA2AJT4 805 aaKnown RBP12.36□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Atp6v1dP57746 247 aa12.36□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Rprd2Q6NXI6 1469 aaKnown RBP12.36□□□□□ -0.43
Ldlr-201ENSMUST00000034713 GsdmaQ9EST1 446 aa12.35□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Smarce1O54941 411 aaKnown RBP12.35□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Senp3Q9EP97 568 aaKnown RBP12.35□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Fyb1O35601 819 aa12.34□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Ksr2Q3UVC0 959 aa12.34□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Pip4k2bQ80XI4 416 aa12.34□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Glipr1l2Q9CQ35 332 aa12.34□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Asxl1P59598 1514 aa12.34□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Adgrl2Q8JZZ7 1487 aa12.34□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Kif16bB1AVY7 1312 aa12.34□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Pik3c2gO70167 1506 aa12.34□□□□□ -0.43
Ldlr-201ENSMUST00000034713 VgfQ0VGU4 617 aa12.34□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Atf3Q60765 181 aa12.34□□□□□ -0.43
Ldlr-201ENSMUST00000034713 U2surpQ6NV83 1029 aaKnown RBP12.34□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Cluap1Q8R3P7 413 aa12.34□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Polr3aB2RXC6 1390 aa12.34□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Becn1O88597 448 aa12.34□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Plekhg5Q66T02 1073 aa12.34□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Arhgef40Q3UPH7 1517 aa12.34□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Arhgef11Q68FM7 1552 aa12.33□□□□□ -0.43
Ldlr-201ENSMUST00000034713 Gm21190A0A0G2JGJ6 266 aa12.33□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Stk31Q99MW1 1018 aa12.33□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Abca16E9PWJ7 1678 aa12.33□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Dnajc5P60904 198 aa12.33□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Atl3Q91YH5 541 aa12.33□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Trim58Q5NCC9 485 aa12.33□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Sall3Q62255 1320 aa12.32□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Ssh2Q5SW75 1423 aa12.32□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Calcoco2A2A6M5 331 aa12.32□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Cyb5rlB1AS42 316 aa12.31□□□□□ -0.44
Ldlr-201ENSMUST00000034713 PnnO35691 725 aaKnown RBP12.31□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Znf326O88291 580 aa12.31□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Tmco5bQ80X59 307 aa12.31□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Rab11fip3Q8CHD8 1047 aa12.31□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Atp7aQ64430 1491 aa12.31□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Pes1Q9EQ61 584 aaKnown RBP12.31□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Ush1cQ9ES64 910 aa12.31□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Abcc2Q8VI47 1543 aa12.31□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Ciz1Q8VEH2 845 aa12.3□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Kdm3bQ6ZPY7 1562 aa12.3□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Rabep1O35551 862 aa12.3□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Q3TQI7 289 aaKnown RBP12.3□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Slc4a2P13808 1237 aaKnown RBP12.29□□□□□ -0.44
Ldlr-201ENSMUST00000034713 RdxP26043 583 aaKnown RBP12.29□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Pdcl3Q8BVF2 240 aa12.29□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Ak7Q9D2H2 614 aa12.29□□□□□ -0.44
Ldlr-201ENSMUST00000034713 Naip5Q9R016 1403 aa12.29□□□□□ -0.44
Retrieved 100 of 22,080 RNA–protein pairs in 11.6 ms