RNA–Protein interactions for RNA: ENSMUST00000028728.5

Ubr1-201, Transcript of E3 ubiquitin-protein ligase UBR1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ubr1, Length 7,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr1-201ENSMUST00000028728 PdcQ9QW08 244 aa12.33□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Pnmal2G3X9N3 661 aa12.33□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Cecr2E9Q2Z1 1453 aa12.33□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Cchcr1Q8K2I2 770 aa12.33□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Cux2P70298 1426 aa12.32□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Birc3O08863 600 aa12.32□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Dixdc1Q80Y83 711 aa12.32□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Hoxa7P02830 229 aa12.32□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Smc3Q9CW03 1217 aaKnown RBP12.32□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Ipo7Q9EPL8 1038 aaKnown RBP12.32□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Mrvi1Q9WUX5 899 aaKnown RBP12.32□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Tomm22Q9CPQ3 142 aa12.31□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Znhit6Q3UFB2 460 aaKnown RBP12.31□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Dhx29Q6PGC1 1365 aaKnown RBP12.31□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Nop14Q8R3N1 860 aaKnown RBP12.31□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Ubxn4Q8VCH8 506 aa12.31□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Cttnbp2B9EJA2 1648 aa12.3□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Rbm10Q99KG3 930 aaKnown RBP12.3□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Mns1Q61884 491 aa12.3□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Ccdc171E9Q1U1 1324 aa12.3□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Rnf20Q5DTM8 973 aa12.3□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Pank1Q8K4K6 548 aa12.3□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Bicd2Q921C5 820 aa12.3□□□□□ -0.44
Ubr1-201ENSMUST00000028728 DmtnQ9WV69 405 aa12.3□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Paxip1Q6NZQ4 1056 aa12.3□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Ssh1Q76I79 1042 aa12.3□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Fam184aE9PW83 1143 aa12.3□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Ccdc47Q9D024 483 aaKnown RBP12.3□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Stk31Q99MW1 1018 aa12.29□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Ftsj3Q9DBE9 838 aaKnown RBP12.29□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Lemd3Q9WU40 921 aa12.29□□□□□ -0.44
Ubr1-201ENSMUST00000028728 NcapgE9PWG6 1004 aa12.29□□□□□ -0.44
Ubr1-201ENSMUST00000028728 NgefQ8CHT1 710 aa12.28□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Stk26Q99JT2 416 aa12.28□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Cplx2P84086 134 aa12.28□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Nol10Q5RJG1 687 aaKnown RBP12.28□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Rnf214Q8BFU3 668 aaKnown RBP12.28□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Evc2Q8K1G2 1220 aa12.28□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Fan1Q69ZT1 1020 aa12.27□□□□□ -0.44
Ubr1-201ENSMUST00000028728 AnlnQ8K298 1121 aaKnown RBP12.27□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Q9D2X8 372 aa12.27□□□□□ -0.44
Ubr1-201ENSMUST00000028728 Rab3gap2Q8BMG7 1366 aa12.27□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Ints3Q7TPD0 1041 aaKnown RBP12.27□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Nek4Q9Z1J2 792 aa12.27□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Hook1Q8BIL5 728 aa12.27□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Phactr2B1AVP0 632 aa12.27□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Rab11fip3Q8CHD8 1047 aa12.27□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Naip1Q9QWK5 1403 aa12.26□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Gnai1B2RSH2 354 aa12.26□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Gnai3Q9DC51 354 aa12.26□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Pdcl2Q78Y63 240 aa12.26□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Rsph4aQ8BYM7 716 aa12.26□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Kif3cO35066 796 aa12.26□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Gabpb2P81069 414 aa12.26□□□□□ -0.45
Ubr1-201ENSMUST00000028728 PogkQ80TC5 607 aa12.26□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Gpatch3Q8BIY1 525 aa12.25□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Plin1Q8CGN5 517 aa12.25□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Ddx11Q6AXC6 880 aa12.24□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Usp40Q8BWR4 1235 aa12.24□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Gcom1E9PZ54 550 aa12.24□□□□□ -0.45
Ubr1-201ENSMUST00000028728 MyzapQ3UIJ9 466 aa12.24□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Gcc1Q9D4H2 778 aa12.24□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Top2aQ01320 1528 aaKnown RBP12.24□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Triml2E9PW10 424 aa12.24□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Polr3gQ6NXY9 223 aa12.24□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Sart1Q9Z315 806 aaKnown RBP12.24□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Mcm4P49717 862 aa12.23□□□□□ -0.45
Ubr1-201ENSMUST00000028728 PhaxQ9JJT9 385 aaKnown RBP12.23□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Clstn1Q9EPL2 979 aa12.23□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Chmp4cQ9D7F7 232 aa12.23□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Pdia4P08003 638 aaKnown RBP12.23□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Ift140E9PY46 1464 aa12.23□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Dusp27Q148W8 1138 aa12.22□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Ppp2r1aQ76MZ3 589 aa12.22□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Slc4a10Q5DTL9 1118 aa12.22□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Zkscan2G3X952 960 aa12.22□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Kif3bQ61771 747 aa12.22□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Rec8Q8C5S7 591 aa12.22□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Swt1Q9DBQ9 907 aa12.22□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Nsd2Q8BVE8 1365 aa12.22□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Erc2Q6PH08 957 aa12.22□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Drc7Q6V3W6 876 aa12.22□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Def6Q8C2K1 630 aa12.22□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Tmc1Q8R4P5 757 aa12.21□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Q7TT23 1179 aa12.21□□□□□ -0.45
Ubr1-201ENSMUST00000028728 Rufy1Q8BIJ7 712 aa12.21□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Cyp46a1Q9WVK8 500 aa12.21□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Hs1bp3Q3TC93 395 aa12.21□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Tpm4Q6IRU2 248 aa12.21□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Ric3Q8BPM6 367 aa12.21□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Myom3A2ABU4 1439 aa12.2□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Chaf1aQ9QWF0 911 aa12.2□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Gse1Q3U3C9 1213 aa12.2□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Ppp1r9bQ6R891 817 aaKnown RBP12.2□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Ppm1eQ80TL0 749 aa12.2□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Psma5Q9Z2U1 241 aaKnown RBP12.2□□□□□ -0.46
Ubr1-201ENSMUST00000028728 LrpprcQ6PB66 1392 aaKnown RBP12.2□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Rbm25B2RY56 838 aaKnown RBP12.2□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Olfml1Q8BSH2 233 aa12.2□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Smc5Q8CG46 1101 aaKnown RBP12.2□□□□□ -0.46
Retrieved 100 of 22,080 RNA–protein pairs in 66.7 ms