RNA–Protein interactions for RNA: YPR028W

YOP1, Transcript of Membrane protein that interacts with Yip1p to mediate membrane traffic, yeast

Gene YOP1, Length 543 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YOP1	YPR028W	YER135C	P40082	130 aa		0.89	□□□□□ -2.27
YOP1	YPR028W	MSS2	P40990	351 aa		0.89	□□□□□ -2.27
YOP1	YPR028W	JLP1	Q12358	412 aa		0.89	□□□□□ -2.27
YOP1	YPR028W	TDA8	Q6B2U8	126 aa		0.89	□□□□□ -2.27
YOP1	YPR028W	RPL27B	P0C2H7	136 aa	Known RBP	0.88	□□□□□ -2.27
YOP1	YPR028W	YOL162W	P0CF19	215 aa		0.88	□□□□□ -2.27
YOP1	YPR028W	STE18	P18852	110 aa		0.88	□□□□□ -2.27
YOP1	YPR028W	ERG28	P40030	148 aa		0.88	□□□□□ -2.27
YOP1	YPR028W	YNL217W	P40152	326 aa		0.88	□□□□□ -2.27
YOP1	YPR028W	IRC18	P47056	224 aa		0.88	□□□□□ -2.27
YOP1	YPR028W	ADO1	P47143	340 aa	Known RBP	0.88	□□□□□ -2.27
YOP1	YPR028W	MGA1	P53050	456 aa		0.88	□□□□□ -2.27
YOP1	YPR028W	SPG3	Q04398	127 aa	Predicted RBP	0.88	□□□□□ -2.27
YOP1	YPR028W	SML1	Q04964	104 aa		0.88	□□□□□ -2.27
YOP1	YPR028W	YKL183C-A	Q3E765	70 aa		0.88	□□□□□ -2.27
YOP1	YPR028W	TSC3	Q3E790	80 aa		0.88	□□□□□ -2.27
YOP1	YPR028W	FKS1	P38631	1876 aa	Known RBP	0.87	□□□□□ -2.27
YOP1	YPR028W	GCN3	P14741	305 aa		0.87	□□□□□ -2.27
YOP1	YPR028W	TCA17	P32613	152 aa		0.87	□□□□□ -2.27
YOP1	YPR028W	MGM101	P32787	269 aa	Known RBP	0.87	□□□□□ -2.27
YOP1	YPR028W	FZF1	P32805	299 aa		0.87	□□□□□ -2.27
YOP1	YPR028W	SNC2	P33328	115 aa		0.87	□□□□□ -2.27
YOP1	YPR028W	PRP18	P33411	251 aa	Predicted RBP	0.87	□□□□□ -2.27
YOP1	YPR028W	PRX1	P34227	261 aa	Known RBP	0.87	□□□□□ -2.27
YOP1	YPR028W	YET1	P35723	206 aa		0.87	□□□□□ -2.27
YOP1	YPR028W	CBT1	P36038	271 aa	Predicted RBP	0.87	□□□□□ -2.27
YOP1	YPR028W	YKR045C	P36138	183 aa		0.87	□□□□□ -2.27
YOP1	YPR028W	UMP1	P38293	148 aa		0.87	□□□□□ -2.27
YOP1	YPR028W	YBR219C	P38317	127 aa		0.87	□□□□□ -2.27
YOP1	YPR028W	RMD6	P39975	231 aa		0.87	□□□□□ -2.27
YOP1	YPR028W	YNL194C	P40169	301 aa		0.87	□□□□□ -2.27
YOP1	YPR028W	DOC1	P53068	250 aa		0.87	□□□□□ -2.27
YOP1	YPR028W	BOL2	P53082	120 aa		0.87	□□□□□ -2.27
YOP1	YPR028W	PGA2	P53903	129 aa		0.87	□□□□□ -2.27
YOP1	YPR028W	SWP1	Q02795	286 aa		0.87	□□□□□ -2.27
YOP1	YPR028W	GAS3	Q03655	524 aa		0.87	□□□□□ -2.27
YOP1	YPR028W	RNH1	Q04740	348 aa		0.87	□□□□□ -2.27
YOP1	YPR028W	CDC33	P07260	213 aa	Known RBP	0.86	□□□□□ -2.27
YOP1	YPR028W	SEC4	P07560	215 aa	Known RBP	0.86	□□□□□ -2.27
YOP1	YPR028W	MRPL17	P36528	281 aa		0.86	□□□□□ -2.27
YOP1	YPR028W	SIP3	P38717	1229 aa		0.86	□□□□□ -2.27
YOP1	YPR028W	AST2	P39945	430 aa	Known RBP	0.86	□□□□□ -2.27
YOP1	YPR028W	YRB2	P40517	327 aa		0.86	□□□□□ -2.27
YOP1	YPR028W	GVP36	P40531	326 aa	Known RBP	0.86	□□□□□ -2.27
YOP1	YPR028W	RAD17	P48581	401 aa		0.86	□□□□□ -2.27
YOP1	YPR028W	PDR17	P53844	350 aa		0.86	□□□□□ -2.27
YOP1	YPR028W	BNA7	Q04066	261 aa		0.86	□□□□□ -2.27
YOP1	YPR028W	CSI2	Q08054	341 aa		0.86	□□□□□ -2.27
YOP1	YPR028W	MET5	P47169	1442 aa		0.86	□□□□□ -2.27
YOP1	YPR028W	FLO9	P39712	1322 aa		0.86	□□□□□ -2.27
YOP1	YPR028W	TIM9	O74700	87 aa		0.85	□□□□□ -2.27
YOP1	YPR028W	URA5	P13298	226 aa	Known RBP	0.85	□□□□□ -2.27
YOP1	YPR028W	KSS1	P14681	368 aa		0.85	□□□□□ -2.27
YOP1	YPR028W	BET1	P22804	142 aa		0.85	□□□□□ -2.27
YOP1	YPR028W	YGL010W	P25338	174 aa		0.85	□□□□□ -2.27
YOP1	YPR028W	NTG1	P31378	399 aa		0.85	□□□□□ -2.27
YOP1	YPR028W	SEC17	P32602	292 aa		0.85	□□□□□ -2.27
YOP1	YPR028W	PTM1	P32857	523 aa		0.85	□□□□□ -2.27
YOP1	YPR028W	TMA19	P35691	167 aa	Known RBP	0.85	□□□□□ -2.27
YOP1	YPR028W	UTP30	P36144	274 aa	Known RBP	0.85	□□□□□ -2.27
YOP1	YPR028W	YBR220C	P38318	560 aa		0.85	□□□□□ -2.27
YOP1	YPR028W	TRM5	P38793	499 aa		0.85	□□□□□ -2.27
YOP1	YPR028W	RPL13B	P40212	199 aa	Known RBP	0.85	□□□□□ -2.27
YOP1	YPR028W	CWC23	P52868	283 aa	Predicted RBP	0.85	□□□□□ -2.27
YOP1	YPR028W	YGR050C	P53231	118 aa		0.85	□□□□□ -2.27
YOP1	YPR028W	SAY1	P53324	424 aa		0.85	□□□□□ -2.27
YOP1	YPR028W	YNR077C	P53758	84 aa		0.85	□□□□□ -2.27
YOP1	YPR028W	MZM1	Q03429	123 aa	Predicted RBP	0.85	□□□□□ -2.27
YOP1	YPR028W	YLR162W	Q06235	118 aa		0.85	□□□□□ -2.27
YOP1	YPR028W	GPM2	Q12008	311 aa		0.85	□□□□□ -2.27
YOP1	YPR028W	FSF1	Q12029	327 aa	Known RBP	0.85	□□□□□ -2.27
YOP1	YPR028W	YPL162C	Q12042	273 aa		0.85	□□□□□ -2.27
YOP1	YPR028W	MCP1	Q12106	302 aa		0.85	□□□□□ -2.27
YOP1	YPR028W	MDM32	Q12171	622 aa		0.85	□□□□□ -2.27
YOP1	YPR028W	RPL13A	Q12690	199 aa	Predicted RBP	0.85	□□□□□ -2.27
YOP1	YPR028W	TUS1	Q06412	1307 aa		0.85	□□□□□ -2.27
YOP1	YPR028W	YDR157W	A0A023PZE8	133 aa		0.84	□□□□□ -2.27
YOP1	YPR028W	RPL25	P04456	142 aa	Known RBP	0.84	□□□□□ -2.27
YOP1	YPR028W	RPB4	P20433	221 aa	Predicted RBP	0.84	□□□□□ -2.27
YOP1	YPR028W	MAG1	P22134	296 aa	Known RBP	0.84	□□□□□ -2.27
YOP1	YPR028W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	0.84	□□□□□ -2.27	not detected
YOP1	YPR028W	TFC1	P32367	649 aa		0.84	□□□□□ -2.27
YOP1	YPR028W	SHE2	P36068	246 aa	Known RBP RIP-Chip data	0.84	□□□□□ -2.27	not detected
YOP1	YPR028W	YBR209W	P38311	105 aa		0.84	□□□□□ -2.27
YOP1	YPR028W	YBR285W	P38354	144 aa		0.84	□□□□□ -2.27
YOP1	YPR028W	IKI1	P38874	309 aa		0.84	□□□□□ -2.27
YOP1	YPR028W	GAA1	P39012	614 aa		0.84	□□□□□ -2.27
YOP1	YPR028W	EAF6	P47128	113 aa		0.84	□□□□□ -2.27
YOP1	YPR028W	LSM7	P53905	115 aa	Known RBP	0.84	□□□□□ -2.27
YOP1	YPR028W	COG5	P53951	403 aa		0.84	□□□□□ -2.27
YOP1	YPR028W	TIM11	P81449	96 aa	Predicted RBP	0.84	□□□□□ -2.27
YOP1	YPR028W	YDR249C	Q03787	373 aa		0.84	□□□□□ -2.27
YOP1	YPR028W	ANT1	Q06497	328 aa		0.84	□□□□□ -2.27
YOP1	YPR028W	GIS3	Q12418	502 aa		0.84	□□□□□ -2.27
YOP1	YPR028W	ATG40	Q99325	256 aa		0.84	□□□□□ -2.27
YOP1	YPR028W	PDR18	P53756	1333 aa		0.84	□□□□□ -2.28
YOP1	YPR028W	ARG80	P07249	177 aa		0.83	□□□□□ -2.28
YOP1	YPR028W	GPA2	P10823	449 aa		0.83	□□□□□ -2.28
YOP1	YPR028W	RPB3	P16370	318 aa	Known RBP	0.83	□□□□□ -2.28
YOP1	YPR028W	MER1	P16523	270 aa		0.83	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 39.4 ms